Query= MSMg01no546_c12.b1 MSMg01no546_c12.b1 CHROMAT_FILE:
MSMg01no546_c12.b1 PHD_FILE: MSMg01no546_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:21 2005
(663 letters)
>mm_chr2_9893805_9894867
Length = 1063
Score = 1266 bits (655), Expect = 0.0
Identities = 661/663 (99%)
Strand = Plus / Minus
Query: 1 cagcacacctacattgttatgagagttccgagaatcaaagtcagacagagacctttgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cagcacacctacattgttatgagagttccgagaatcaaagtcagacagagacctttgttt 804
Query: 61 ttatgccagaagcctgttactctctgatccagcgtctcaatctcacaaacagtcgagctc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 803 ttatgccagaagcctgttactctctgatccagcgcctcaatctcacaaacagtcgagctc 744
Query: 121 tgtagttgttgaatgcaaggactcgggtgacccatgggtacagaaggctgactgtaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgtagttgttgaatgcaaggactcgggtgacccatgggtacagaaggctgactgtaggct 684
Query: 181 ctcaactgatgtgcacccgattcctgctcagctgggtgggctttaagtggtcacactttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctcaactgatgtgcacccgattcctgctcagctgggtgggctttaagtggtcacactttt 624
Query: 241 ccaactctgtcgctgaatttcagagaacacactgatttccctatccatctaacacagtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccaactctgtcgctgaatttcagagaacacactgatttccctatccatctaacacagtga 564
Query: 301 tctggaacaaaaagtaaaatgtgtgctcactgcttctgtagccgagagtgagcagcgtgg 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 tctggaacaaaaagtaaaatgtgtgctccctgcttctgtagccgagagtgagcagcgtgg 504
Query: 361 tcaagggtctgcagcttctcctttgtttagttagagactgttgtgtagccgagtccagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcaagggtctgcagcttctcctttgtttagttagagactgttgtgtagccgagtccagtt 444
Query: 421 tatctagaacactaagggagaggagaagcatgactgagtagagtaaataccattttatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tatctagaacactaagggagaggagaagcatgactgagtagagtaaataccattttatca 384
Query: 481 gcacagtcatgtattccctatgacacagatgaaagaactcttgaataatttttctagtca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcacagtcatgtattccctatgacacagatgaaagaactcttgaataatttttctagtca 324
Query: 541 gcaacgctatagatgcagctaatactcttatacatttttgcccctattacataaaattgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaacgctatagatgcagctaatactcttatacatttttgcccctattacataaaattgg 264
Query: 601 catcagaagatcaaatgatttctatctgccaaatctgaggtgcatatactgactatacca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catcagaagatcaaatgatttctatctgccaaatctgaggtgcatatactgactatacca 204
Query: 661 aga 663
|||
Sbjct: 203 aga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_c12.g1 MSMg01no546_c12.g1 CHROMAT_FILE:
MSMg01no546_c12.g1 PHD_FILE: MSMg01no546_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:21 2005
(648 letters)
>mm_chr2_9715392_9716444
Length = 1053
Score = 1178 bits (609), Expect = 0.0
Identities = 640/653 (98%), Gaps = 5/653 (0%)
Strand = Plus / Plus
Query: 1 actttggaggtagaaacagaaggattaggagctcaagtccactctcagttacctggaaag 60
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 acttgggaggtagaaacagaaggattaggagttcaagtccactctcagttacctggaaag 260
Query: 61 tctagcctggtctacacctgtctc-----caaagcaaaactcaagacctgattaatccat 115
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 261 tctagcctggtctacacctgtctccaaagcaaagcaaaactcaagaccggattaatccat 320
Query: 116 ttcagctctgtaggagaatgcatacaattgtctctcttaaaaccagatcccctgtggctc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagctctgtaggagaatgcatacaattgtctctcttaaaaccagatcccctgtggctc 380
Query: 176 aaatcccaactttttatccctcacataatagcctaacaacttaaacacccccacggtagg 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 aaatcccaactttttatccctcacataatagcctaacaacttaaacacccccaccgtagg 440
Query: 236 atactcttacttctgaagccatttaaaaggctaaactgtagaaagaaggggctcgggaga 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactcttacttctgaagccatttaaaaggctaaactgtagaaagaaggggctcgggaga 500
Query: 296 ggaaggggagggggtgctgaaagggatgggtggcgcatgtgctcttgtgcgtgtgagtgt 355
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 501 ggaaggggagggggtgctgaaagggatgggtggcgcatgtactcttgtgcatgtgagtgt 560
Query: 356 gttggagtgttcacttaaaagatgggtgctatttcacacttcctcgcatacaaatctaac 415
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcggagtgttcacttaaaagatgggtgctatttcacacttcctcgcatacaaatctaac 620
Query: 416 aaaagagtccagagcttggagctacattgtgcccatctgtcggcaggctattcaattaac 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaagagtccagagcttggagccacattgtgcccatctgtcggcaggctattcaattaac 680
Query: 476 tcattgttaccattgaaacgccagctccgtgaatctaggctagaggaagtcccaggtgat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcattgttaccattgaaacgccagctccgtgaatctaggctagaggaagtcccaggtgat 740
Query: 536 aaagtgacaaccattgaactgttggcaaagcagagcaggtaacttgctcatcttgggccc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagtgacaaccattgaactgttggcaaagcagagcaggtaacttgctcatcttgggccc 800
Query: 596 tctccctccctcctctttctctggcccttttcctttttctctctctagattcc 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctccctccctcctctttctctggcccttttcctttttctctctctagattcc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1053
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1043
Effective search space: 665434
Effective search space used: 665434
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
