BAC Information

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BAC

Clone NameMSMg01-546D01
Chromosome2 (Build37)
Map Location 172,453,339 - 172,453,899
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c
Downstream geneLOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546D01.T7 (MSMg01no546_d01.b1)MSMg01-546D01.TJ (MSMg01no546_d01.g1)
ACCAG611073AG611074
length1,509732
length of high quality
(start - end)		---561 (70 - 630)
definitionCHROMAT_FILE: MSMg01no546_d01.b1 PHD_FILE: MSMg01no546_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:24 2005CHROMAT_FILE: MSMg01no546_d01.g1 PHD_FILE: MSMg01no546_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCACGCGCAACAAGATGAGCGCTACTCGCGCTGCTGCATATTCTCGCNGC
CGGATGACACCCACCTATTCGTAAACGAGTACTATACTGATTCATCCGCC
GCACCGTGTAGATATTATTCGAATAGTGATATCCTTCCGTATTATCCGAC
AAGACCATCGATCCACGCCTTATATCCACATATTACGCAAGAGAGCGAAC
CTTGGTGTAATTGCGCCCGTGTGTGATGATGAGAGACGATAGTACGGAGG
AGCTGACCGGCGTGAGAGCGTATGTGTACTATACGGTGTTAGATCGAAAG
ACGCCGCGGTAACGATGCTATATATCCACGTGAGACCTCACGTTGTTCTC
GCCTTCGTCTGCATGTCTGACGCTGCCTGCCCGATGACTAGAANAGTGTC
CGTGCACTTAGGAGCGCGTGATATGTCCTCTTATCACGATCTATGATATT
CTCCGCTCATGAGCGCTTGATAGNCCACGCGCGTGTAGTTGACCTCTCTA
NTCGACGAGGCACACGCGCCTACTTGCGTCCTTATAGAATTATATATATT
GCGCGTATGTTGCACAGCATGGTCGGCGATGGTGAGTCCACCTACATCAG
CGGCGTCACGATATCTTCGGAGGACTAGGGACGACGAGTACGCCTACAGA
TAGTGCTGCGTAGCTCGAGTCGTACCTGGTAGTATGAGATAGTGTGCGCG
GCGGTCTGGCGCGCCGTTTACGTCTATTACGAGCGAGTCTGCGGCGCCCC
AGCTCCCACACGAGTTGTATATATTCTCGATCTGCACTTNGCGAGCGCAG
CGGCGTTCTGTATATATCTCTAATTCCGATCTTCGACGCTGTACCCACGT
ACAATGCGACGCCGGTGACGTAGCGTACGCGTTCGAGCACGTGTCAGTCG
CTGATANATAGTTGTGATAGATGAGTGCAAGANCGTACAGCAGGTCGACC
ACGGGATGTGTATGACGCGGAATGGTGCGGCTCAATATATATCCCGTACC
CGATGATTGACTCACGGAGCGACGCGCTCGCATGCGACTACTCCACTACT
CGTAACACGTATTCTTTAACTNTCTCGGCGCACAGTATACATTATCTATG
CGTTCGCTGTGAACGGATTGATGGTGGCGACATGTTANACGTAGTCAAGT
GCTCGATTATATACGGATGCGCGAANGTNTATACATCACAGCTCGCGCGT
ATATGCACCTCTAAATACACTGCTCGACACCGCNCGACGCGGATGATATA
TCAGAAAAGGACATATGACCTACACACGAGCGTCTGTCCAGATTAATATA
GCCGGACCCGAGGGCAGCGGGTGTGAGNTAGCGACGATATGTCGCANGAC
GAGCNAGTACGTCGTACTATCGATGNTGCTGTGAGGATGAGAGTNATTCA
TAGCTACTACGAACAAGAACGTGATCGCGACAGATGCGATCGCGTACANC
GCGCGCACTGATGANNTGCATGTCTGTATATGATTACGANATCACCANAG
ACTATCAGN

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTTTCTGAGAAAATAAAGGGATGGAGGAG
GAGGAAAAGGAGGAGGAGAAGAAGGGTGAAATCTCATAAAAATAAAAGCC
CGGATCTCAACCTCAGCAGCAAACTGTACTTCAAATAGTTTTAAACGAAC
TCCTCGGCTGAGAGGCCACCAGCGTGGTAGGCTTGTTTCCCATGCAAACA
GAGCCAAAGGAGAAAGAACTAGGGGTTCTCCAGGAAGAGACCCCCAGGCT
TCTAAGGCAGACCCAGTAGATGTCAGCAGACCTAGAGAGCTGAGCGCTGT
GCACAGAGCCTGCCCTGCCCTGCCCTGCTCTGCCCTTTCCCCAGGGCTCC
TGTTTTCAGAGAAAGAAGCAGAGGCCTGAAAGGTTTTCGTAGATCCTGCT
CTTGCAACAGCACGACTAGCCCACACTGTGCCCCCTTCTTCCAAAGCTGC
CACGCCAGAGCCCTTTGTCACCCCTTTATGTCCCGAACTTAAGAACAGTT
GGGGTGGGGAGGGGTGTGGGCGAGGAGGTGGCTTCAGAGTGGCCATGCGG
AAATCTAGGAATCTTGTCCTAGGTCTTGGGTTGAATGTCAGGACTTTTTC
AACTTATATAGGGAGGTGTGTGTGTGCGTGTGTGTGTGTGTGCGTGTGTG
TCTCACTCAAGAAATATTTTTTCTTCCTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_d01.g1 MSMg01no546_d01.g1 CHROMAT_FILE:
MSMg01no546_d01.g1 PHD_FILE: MSMg01no546_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:24 2005
         (561 letters)



>mm_chr2_172453139_172454099
          Length = 961

 Score = 1069 bits (553), Expect = 0.0
 Identities = 559/561 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttctgagaaaataaagggatggaggaggaggaaaaggaggaggagaagaagggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttctgagaaaataaagggatggaggaggaggaaaaggaggaggagaagaagggtga 260

                                                                       
Query: 61  aatctcataaaaataaaagcccggatctcaacctcagcagcaaactgtacttcaaatagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctcataaaaataaaagcccggatctcaacctcagcagcaaactgtacttcaaatagt 320

                                                                       
Query: 121 tttaaacgaactcctcggctgagaggccaccagcgtggtaggcttgtttcccatgcaaac 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tttaaacgaactcctcggctgagaggccaccagcgtggcaggcttgtttcccatgcaaac 380

                                                                       
Query: 181 agagccaaaggagaaagaactaggggttctccaggaagagacccccaggcttctaaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagccaaaggagaaagaactaggggttctccaggaagagacccccaggcttctaaggca 440

                                                                       
Query: 241 gacccagtagatgtcagcagacctagagagctgagcgctgtgcacagagcctgccctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacccagtagatgtcagcagacctagagagctgagcgctgtgcacagagcctgccctgcc 500

                                                                       
Query: 301 ctgccctgctctgccctttccccagggctcctgttttcagagaaagaagcagaggcctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgccctgctctgccctttccccagggctcctgttttcagagaaagaagcagaggcctga 560

                                                                       
Query: 361 aaggttttcgtagatcctgctcttgcaacagcacgactagcccacactgtgcccccttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggttttcgtagatcctgctcttgcaacagcacgactagcccacactgtgcccccttct 620

                                                                       
Query: 421 tccaaagctgccacgccagagccctttgtcacccctttatgtcccgaacttaagaacagt 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 tccaaagctgccacgccagagccctttgtcacccctttatgtcccggacttaagaacagt 680

                                                                       
Query: 481 tggggtggggaggggtgtgggcgaggaggtggcttcagagtggccatgcggaaatctagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggggtggggaggggtgtgggcgaggaggtggcttcagagtggccatgcggaaatctagg 740

                                
Query: 541 aatcttgtcctaggtcttggg 561
           |||||||||||||||||||||
Sbjct: 741 aatcttgtcctaggtcttggg 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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