Query= MSMg01no546_m05.b1 MSMg01no546_m05.b1 CHROMAT_FILE:
MSMg01no546_m05.b1 PHD_FILE: MSMg01no546_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:10 2005
(476 letters)
>mm_chr2_11303825_11304701
Length = 877
Score = 563 bits (291), Expect = e-164
Identities = 381/447 (85%), Gaps = 60/447 (13%)
Strand = Plus / Minus
Query: 5 gaattcagcttac-tttctttttgttgagaatctttgtctgcatggtcattagaggaatt 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaattcagcttacaattatttttgttgagaatctttgtctgcatggtcattagaggaatt 391
Query: 64 gatctataatttgggagagattaatggtgggaatatgtgaggaaatggggcagagggact 123
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 390 ggtctataatttgggagagattaatggtgggaatatgtgaggaaatagggcagagggact 331
Query: 124 gggaggtggccttgctaaaaacacattttaggcatgtacaaaattttcaagcaataaaaa 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 330 gggaggtggccttgctaaaaacacattttaggcatatacaaaattttcaagcaataaaaa 271
Query: 184 aagaaagatgaactatgagcataagattctagtggtaaaaaggtgtcagctacccccc-- 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aagaaagatgaactatgagcataagattctagtggtaaaaaggtgtcagctaccccccca 211
Query: 242 cacacacaaaggatatgtacacacacacacgctcacacacacacac-------------- 287
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cacacacaaaggatatgtacacacacacacgctcacacacacacacacaatatatatata 151
Query: 288 --------------------------------------tatatatatat--atatatata 307
||||||||||| |||||||||
Sbjct: 150 tacacacatacatatatatgtatgtatgtgtgtatatatatatatatatacatatatata 91
Query: 308 tattacatgcacacatacat--acacacatatcagattagatgcactc-ttttctcctcc 364
||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 90 tattacatgcacacacacatacacacacatatcagattagatgcactctttttctcctcc 31
Query: 365 ctctctccctctgtcacctcttcctcc 391
|||||||||||||||||||||||||||
Sbjct: 30 ctctctccctctgtcacctcttcctcc 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space: 404022
Effective search space used: 404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_m05.g1 MSMg01no546_m05.g1 CHROMAT_FILE:
MSMg01no546_m05.g1 PHD_FILE: MSMg01no546_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:10 2005
(272 letters)
>mm_chr2_11114340_11115011
Length = 672
Score = 493 bits (255), Expect = e-144
Identities = 264/267 (98%)
Strand = Plus / Plus
Query: 1 actcataaataaagctcagacagaaaagctttcgctttctgttctcctttgaccttcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcataaataaagctcagacagaaaagctttcgctttctgttctcctttgaccttcagc 260
Query: 61 ctgtgtcacctccagaggcagttttgccctgctgtgcggttatggtcatttatgcttgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgtcacctccagaggcagttttgccctgctgtgcggttatggtcatttatgcttgta 320
Query: 121 atctactctgcaaatacttcctgggaaaggaaccacagtcgttggtttctacacggagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctactctgcaaatacttcctgggaaaggaaccacagtcgttggtttctacacggagtt 380
Query: 181 tttcttgccctcttttcttacaccccaaagatacaatccacctcttgcgaaattcctcag 240
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 381 tttcttgccctcttttcttacaccctaaagatacaatccacctcttgagaaattcctcag 440
Query: 241 gtcttggcacgcaaagatgaaggtagc 267
||||| |||||||||||||||||||||
Sbjct: 441 gtctttgcacgcaaagatgaaggtagc 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
