XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TCAGATGTACCTGTCTAGCCTAAGAAAGAGAGACACAAATTAGTTCAAGT
CTTAATGTGGACTATCAGGAGGCAGAAGTCTGAGGAGAAACAAGAGCTAG
TTCAATGAATAGCTGATGGATCATGGCACATGGCAGAGTGACCTTTCCAT
ACATGTTCAGCTCACAGCTCTGTCAATTTAAAAAGGAAACAGAAAAACTG
GCAAGATGGGAACCCGAACCAGCCAGTTTGCCTGAATTCTCAAAAGACAT
TGAAAACAGACTCTCATGTACCTTGAGGTTGGGAGAACTTCCTGGTTCTT
TCACTAGTCAGAAGGACCCAGAGCTGAAAGAGCTGAATTTCCCTCTGCTT
TCAATGGCTGTAGGTCAGATGCATAAAAAGGGTCCCTGTGTGCTAAGGGA
TCTGTGGCTCAAAGAGTGTGGAACACTGACATAACACCCTCTGCCCAGTG
CTTTCCTTGCTTTGGTCTTTCCTCATCTTGGCTATTGTTCCTTACCTTGA
TGCACTCTATGGCTAGGGGGCAGAGACTCAGAGATGGTCAGGCTCTCCTG
AGAGTACAGGAGGTGGTACTTTTGCACCAACTACGTTTAAACCATGTGAT
CTGCACACTCTCAGAAGCCTTCACACCCGTGGTTCTTCTCCTATCTTGTC
AGCTTGGGTGCTGTTTCTTTATCCCTCACCCCTTTCTGGCAG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTTTACCCCATTTTTTTTTCTT
TTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACC
AAAAGTCCCCCATAGCCACCCACCCCTACTCCCCTACCCACCCACTCCCC
CTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGT
CCAATGGGCCTCTCTTTCCAGGGATGGCAGACTAGGCCATCTTTTGATAC
ATATGCAGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTT
GTTCCACCTACAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCT
AGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCA
TCCACTTCTGTGTTTGCTACGCCCCGGCATAGTCACATTTTTAATGGGGT
TATTTGAATTCCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGAT
ATTAGTCCCCTATCAGATTAAGGATTGGTAAAAATTCTTTCCCAATCTCT
TGGTGGCCTCTTTGTCTTATTGACATTGTCTTTTGCCCTGCAGAAGCTTT
GCAATTTTATGAGATCCCATTTGTCGACTCTTGATCTTACAGCACAGGCA
ATTGCTGTTCTGTTTAGGAAATTTTCCCCTGTACCCATAATCTTTGAGGG
T

Query= MSMg01no546_p23.b1 MSMg01no546_p23.b1 CHROMAT_FILE:
MSMg01no546_p23.b1 PHD_FILE: MSMg01no546_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:29 2005
         (536 letters)



>mm_chr2_106311751_106312686
          Length = 936

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagatgtacctgtctagcctaagaaagagagacacaaattagttcaagtctt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 736 gaattcatcagatgtacctgtctagcctaagaaagagagacacaaattagttcaaggctt 677

                                                                       
Query: 65  aatgtggactatcaggaggcagaagtctgaggagaaacaagagctagttcaatgaatagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aatgtggactatcaggaggcagaagtctgaggagaaacaagagctagttcaatgaatagc 617

                                                                       
Query: 125 tgatggatcatggcacatggcagagtgacctttccatacatgttcagctcacagctctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgatggatcatggcacatggcagagtgacctttccatacatgttcagctcacagctctgt 557

                                                                       
Query: 185 caatttaaaaaggaaacagaaaaactggcaagatgggaacccgaaccagccagtttgcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caatttaaaaaggaaacagaaaaactggcaagatgggaacccgaaccagccagtttgcct 497

                                                                       
Query: 245 gaattctcaaaagacattgaaaacagactctcatgtaccttgaggttgggagaacttcct 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 496 gaattctcaaaagacattgaaaacagactgtcatgtaccttgaggttgggagaacttcct 437

                                                                       
Query: 305 ggttctttcactagtcagaaggacccagagctgaaagagctgaatttccctctgctttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 436 ggttctttcactagtcagaaggacccagagctgaaagagctgaatttccctttgctttca 377

                                                                       
Query: 365 atggctgtaggtcagatgcataaaaagggtccctgtgtgctaagggatctgtggctcaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atggctgtaggtcagatgcataaaaagggtccctgtgtgctaagggatctgtggctcaaa 317

                                                                       
Query: 425 gagtgtggaacactgacataacaccctctgcccagtgctttccttgctttggtctttcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagtgtggaacactgacataacaccctctgcccagtgctttccttgctttggtctttcct 257

                                                               
Query: 485 catcttggctattgttccttaccttgatgcactctatggctagggggcagag 536
           |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 256 catcttggctattgttccttgccttgatgcactctatggctagggggcagag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)