BAC Information

Click to search

BAC

Clone NameMSMg01-547G12
Chromosome2 (Build37)
Map Location 52,947,464 - 52,947,572
singlet/doubletsinglet
Overlap geneFmnl2
Upstream geneRif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2
Downstream genePrpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933, Rprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547G12.T7 (MSMg01no547_g12.b1)MSMg01-547G12.TJ (MSMg01no547_g12.g1)
ACCAG612003AG612004
length744759
length of high quality
(start - end)		619 (32 - 650)134 (62 - 195)
definitionCHROMAT_FILE: MSMg01no547_g12.b1 PHD_FILE: MSMg01no547_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:02 2005CHROMAT_FILE: MSMg01no547_g12.g1 PHD_FILE: MSMg01no547_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATAGGTTACGGATCCGCGGAATTCTTTATATA
TATTGGATATTAGTCGCCTATCTGATTTAGGATAGGTAAAGATCCTTTCC
CAATCTGTTGGTGGCCTTTTTGTCTTATGGACGGAGTCTTTTTCCTTGCA
AAAGCTTTGCAGTTTCATGAGATCCCATTTGTCAATTCTCGATCTTACAG
CACAAGCCATTGCTGTTCTATTCAGGAATTTTTTCCCCTGTGCCCATATC
CTCGAGGTTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT
TTATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGAT
AGGAATGGATCAATTCGCATTTTTCTACATGATAATCGCCAGTTGTGCCA
GCACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTC
CCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCT
TCAATTCTATTCCATTGGTCTACTTGTCTGTTTCTATACCAGTACCATGC
AGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTAA
TTCCAGCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATTCTAGGT
TTTTTGTTATTTCAGATGAATTTGAAGATTGCCCATTCTAATTCATTGAA
GAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAAAATGAACAATAACAGATTAATTTTGTGGCAGATAAAG
ATGCTTCAAAGCACTGTGGTAGCTTGGTATACACAACAGAAATAGGTATT
AAAAAGAGCTTTGAATGGTTCTTCCCCTTCCCCTTCCCCTTACCCTTACC
CTTACCCTTCCCCTTCCCCTTCCCTTCCCTCCCCTCCCCTACTTTTCTTT
CTAAGAATTCTTTATTCTGCCAGCAATAATAAAGAATTACCTTTAAAACT
GATGGATGAAATACCTCCTCTTTCTAGCTGCTTGGTGGCTATACACTATG
GCTTGTTGTTTGACCTCTATCGGATACCATGAATTAGCTCATGGCTCTGT
TTCAGTCCCTGTTGTTCGGATTGTTCGATTGCCACCCCTCAGTAATGAAC
CCGGTGATACCCTTCTGAGGTGGTTTCTTCATAAATGATTTGTGCTCCCG
TGTCGCCTTCTTTTGTGTTGAGGTAGATTAAACCTGGTTGTCATACTCTA
CTTTTCCGACTTTTTTACTTGATTCCGACCTTAAATTTTGTGTTTTTTTC
TGCCCTATTGTAATTTGATACCTTGTTTGTCTATTGGAGGTTCAACTTTG
CTTCTATTTGAAAGGGTTTTTTTACTTATCTTCACTTCGCTTTGCTTCTA
GCACCACTTTCCTTCTTTGTTCCATCTGGCATTCATTATTAACTACGTCT
TTTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_g12.g1 MSMg01no547_g12.g1 CHROMAT_FILE:
MSMg01no547_g12.g1 PHD_FILE: MSMg01no547_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:02 2005
         (134 letters)



>mm_chr2_52947246_52947777
          Length = 532

 Score =  176 bits (91), Expect = 4e-49
 Identities = 106/111 (95%), Gaps = 2/111 (1%)
 Strand = Plus / Plus

                                                                       
Query: 19  ttaattttgtggcagataaagatgcttcaaagcactgtggtagcttggtatacacaacag 78
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 219 ttaattttgtggcagataaagatgcctcaaagcactgtggtagcctggtatacacaacag 278

                                                              
Query: 79  aaataggtattaaaaagagctttgaatggttcttccccttccccttcccct 129
           |||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct: 279 aaataggtattaaaaagagctttgaatggttctttccct-cccct-cccct 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 532
Length adjustment: 8
Effective length of query: 126
Effective length of database: 524
Effective search space:    66024
Effective search space used:    66024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |