Query= MSMg01no547_h21.b1 MSMg01no547_h21.b1 CHROMAT_FILE:
MSMg01no547_h21.b1 PHD_FILE: MSMg01no547_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:08 2005
(640 letters)
>mm_chr2_46203894_46204933
Length = 1040
Score = 949 bits (491), Expect = 0.0
Identities = 577/637 (90%), Gaps = 51/637 (8%)
Strand = Plus / Plus
Query: 4 ggaattcagttctttgttgttgaatcagaagactcgtgcatgcctggggctcaaacagca 63
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 255 ggaattcagttctttgttgttgaatcagaaaactcgtgcatgcctgggtctcaaacagca 314
Query: 64 ttgctgttccacagcattgctgttccagtcaccatgcttccatttacttccattcaccca 123
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 315 ttgctgttcca----------------gtcaccatgcttccatttacttccattcaccca 358
Query: 124 tatttatttatttatttatttatttatttatttatttatttatttatttatttatttgtt 183
||||||||||||||||||||||||||| || |||| ||
Sbjct: 359 tatttatttatttatttatttatttat--atccattt---------------------tt 395
Query: 184 tttatccatactttttcttgaagtagcctaaagataatactctcattattggaaattgac 243
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttt------------tcttgaagtagcctaaagataatactctcattattggaaattgac 443
Query: 244 agaggctcagaactggcctgcaaccacataatttccaaatgcttgaagctgtgtttctag 303
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 agaagctcagaactggcctgcaaccacataatttccaaatgcttgaagctctgtttctag 503
Query: 304 tttaagtgtgtctgattgtaatatatccatgctgttttattgtactaaccttaagtgaaa 363
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 504 tttaagtgtgtctgattgtaatatatccatgctgttttattgtagtaaccttatgtgaaa 563
Query: 364 tttacttcatcatgataaagtaagaaacaacatgaagaggtatgtgtaataattttaact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttacttcatcatgataaagtaagaaacaacatgaagaggtatgtgtaataattttaact 623
Query: 424 gtcccacaatcagagatatacagaataggctatctgcacaggaacatgattctatcctga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtcccacaatcagagatatacagaataggctatctgcacaggaacatgattctatcctga 683
Query: 484 actttcatgttcaaaaaaatgaaatcttcataggaaatcagtaaaagcacatttattttt 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 actttcatgttcaaaaaaatgaagtcttcataggaaatcagtaaaagcacatttattttt 743
Query: 544 aactggtagtgcttttgattgcatactattagaagcacattttcaacattgaatatattt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aactggtagtgcttttgattgcatactattagaagcacattttcaacattgaatatattt 803
Query: 604 tatatttttactaaaatttttttactatattttgaaa 640
|||||||||||||||||||||||||||||||||||||
Sbjct: 804 tatatttttactaaaatttttttactatattttgaaa 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_h21.g1 MSMg01no547_h21.g1 CHROMAT_FILE:
MSMg01no547_h21.g1 PHD_FILE: MSMg01no547_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:08 2005
(654 letters)
>mm_chr2_46353455_46354508
Length = 1054
Score = 1185 bits (613), Expect = 0.0
Identities = 644/655 (98%), Gaps = 4/655 (0%)
Strand = Plus / Minus
Query: 1 aggaagcctctgtcttagtctttggctgaacatttctctggacttaccaagattatcaat 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aggaagcctctgtctttgtctttggctgaacatttctctggacttaccaagattatcaat 666
Query: 61 gtaaaattatttgtttatgtgggagaatgaaggaatacttgaatgaatttagtcttcatg 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 665 gtaaaattatttgtttatgtgggagaatgaaggaatacctgaatgaatttagtcttcatg 606
Query: 121 taatatatatagttgatttgagcacattcatttcaaagaacccgaaggatcaaacacatg 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 taatatatataggtgatttgagcacattcatttcaaagaacccgaaggatcaaacacatg 546
Query: 181 ggaaaatgttcaagtactactccctgcgtagggttcagggatgaggctctaagtgatgac 240
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 545 ggaaaatgttcaagtacaactccctgggtagggttcagggatgaggctctaagtgatgac 486
Query: 241 aaaatctacctctggtctttacgcagatggttgggttcagaaacactacacttctccaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaatctacctctggtctttacgcagatggttgggttcagaaacactacacttctccaga 426
Query: 301 tatttacatcttgaagatttttttccttacggagacatctaccaaaatcagctaaaactg 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 425 tatttacatcttgaagatttttttccttacagagacatctaccaaaatcagctaaaactg 366
Query: 361 cctccgaaatccagccctccctcctcgattcagctgtatactaaaccatcaccttgctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cctccgaaatccagccctccctcctcgattcagctgtatactaaaccatcaccttgctct 306
Query: 421 tcaactgtatataataagcacatgagcttctggagtgcaccggtttgtccatcacagtgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcaactgtatataataagcacatgagcttctggagtgcaccggtttgtccatcacagtgc 246
Query: 481 acagtctatttgctcccaagttttctgtacgtcattgtgtcggtgtggattttgtagaga 540
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 245 acagtctatttgctcccaagttttctgtacgtcattgtgtcg--gtggattttgtagaga 188
Query: 541 catgttaaacaagcaacgtgattgttttgccaagagatcacattcaaacaccttctacaa 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 187 catgttaaacaagcaacgtgattgttttgccaagagatcacattcaaacaccttctac-a 129
Query: 601 t-taaatggaatacagacagacttttagtatatatttctaatctctaaaaatgta 654
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 128 tctaaatggaatacagacagacttttaggatatatttctaatctctaaaaatgta 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
