Query= MSMg01no547_j03.b1 MSMg01no547_j03.b1 CHROMAT_FILE:
MSMg01no547_j03.b1 PHD_FILE: MSMg01no547_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:14 2005
(289 letters)
>mm_chr2_32820776_32821465
Length = 690
Score = 460 bits (238), Expect = e-134
Identities = 271/286 (94%), Gaps = 10/286 (3%)
Strand = Plus / Minus
Query: 6 gaattctctggaaatgtacttacaggtcaggtgaatgtaagccaccctatgtgggtactg 65
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaattctctggaaatgaagttacaggtcaggtgaatgtaagccaccctatgtgggtactg 477
Query: 66 ggaattaaacctgggccttctacacgagaaacaaaacagccaaatattgtttgaagccaa 125
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggaattaaacctgggccctctacacgagaaacaaaacagccaaatattgtttgaagccaa 417
Query: 126 aaagagaagtggactcaatgaggtaagtctgaggttagtgccttgttccactgtgcagct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaagagaagtggactcaatgaggtaagtctgaggttagtgccttgttccactgtgcagct 357
Query: 186 gttatttctacttgagttaaccttatgctgttttagttaagtgacctttttt-tgggggg 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 356 gttatttctacttgagttaaccttatgctgttttagttaagtgaccttttttctgggggg 297
Query: 245 ggg-------ttgttgttgtgggttttttttgttttgttttgtttt 283
||| ||||||||||||| |||| || ||||||||| ||||
Sbjct: 296 ggggggggggttgttgttgtggggttttgtt-ttttgtttt-tttt 253
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no547_j03.g1 MSMg01no547_j03.g1 CHROMAT_FILE:
MSMg01no547_j03.g1 PHD_FILE: MSMg01no547_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:14 2005
(619 letters)
>mm_chr2_32656496_32657516
Length = 1021
Score = 1052 bits (544), Expect = 0.0
Identities = 604/628 (96%), Gaps = 11/628 (1%)
Strand = Plus / Plus
Query: 1 caggacagccaggactacacagggaaaccctgtcttgaaaaaaaaaacc-----aaaaag 55
||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 196 caggacagccagggctacacagggaaaccctgtcttcaaaaaaaaaaccaaaaaaaaaag 255
Query: 56 -aagaaaaaag-aaagagaccccaattggctttgtgagctctgcccggtgg--atggcct 111
|||||| ||| ||| ||||||||||||||||||||| ||||||||||||| | ||||
Sbjct: 256 aaagaaagaagaaaaaagaccccaattggctttgtgaactctgcccggtgggca--gcct 313
Query: 112 gtctccaaggggaagtaataacacagggatttctctatctggggttcaaggcactgaatc 171
|| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 314 gtttccaaggggaagtaataacatggggatttttctatctggggttcaaggcactgaatc 373
Query: 172 agatagtctgcctgctctctcacagcacactatgtagctctgacctgaccttctgaacag 231
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 374 agatagtctgcctgctctctcacagcacactatgtagccctgacctgaccttctgaacag 433
Query: 232 gctgctgtattttgctctcggtcaccccactgccaaagacgcagagcaaaagagcgcctt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gctgctgtattttgctctcggtcaccccactgccaaagacgcagagcaaaagagcgcctt 493
Query: 292 tgacaatgttgccatccttacctgagatgctgagtctgtgtcacacaggatatacagcag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgacaatgttgccatccttacctgagatgctgagtctgtgtcacacaggatatacagcag 553
Query: 352 gggaagttggggtgacccgttttggataagttcagagatagctcagctttaatgaccatg 411
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 554 gggaagttggggtgacccgttttggataagttcagagacagctcagctttagtgaccatg 613
Query: 412 tgactcctggatatgtcaaattcctgactttgaactgtttcactgtccttcctccctatt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgactcctggatatgtcaaattcctgactttgaactgtttcactgtccttcctccctatt 673
Query: 472 ccgactcattctccttctctctccctctctcaccttccctcccactccctctctctcctt 531
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 674 ccgactcattctccttctctctccctctctcgccttccctcccactccctctctctcctt 733
Query: 532 tcttgatgttgtataccgctgtatcataatgggctgtcaatcatgaacgtgatgaagata 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcttgatgttgtataccgctgtatcataatgggctgtcaatcatgaacgtgatgaagata 793
Query: 592 cagtatgccagcctccctcccacagtct 619
||||||||||||||||||||||||||||
Sbjct: 794 cagtatgccagcctccctcccacagtct 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1021
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1011
Effective search space: 615699
Effective search space used: 615699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
