Query= MSMg01no548_a16.b1 MSMg01no548_a16.b1 CHROMAT_FILE:
MSMg01no548_a16.b1 PHD_FILE: MSMg01no548_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:51 2005
(362 letters)
>mm_chr2_151967347_151968107
Length = 761
Score = 679 bits (351), Expect = 0.0
Identities = 357/359 (99%), Gaps = 1/359 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctgtccagccccctcccaattccagatccaaactggagatgcctgagaggcgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaattcctgtccagccccctcccaattccagatccaaactggagatgcctgagaggcgg 442
Query: 64 gcgggaggggagagcccgcccccagaaggttcattcattccgttgctccttgggcaggtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgggaggggagagcccgcccccagaaggttcattcattccgttgctccttgggcaggtt 382
Query: 124 tggacacaagggaccttgaaagtaaaataaaaccatgaatgagaccgagtggctggctgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggacacaagggaccttgaaagtaaaataaaaccatgaatgagaccgagtggctggctgc 322
Query: 184 agcagaggaaagagagctgtaaacaaagaattttaggacaatgtggtcagagccagccag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagaggaaagagagctgtaaacaaagaattttaggacaatgtggtcagagccagccag 262
Query: 244 ggtctggcaccaaagagatctggctccagttcaaggccagcagtggcttcttggggtctc 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctggcaccaaagagatctggct-cagttcaaggccagcagtggcttcttggggtctc 203
Query: 304 tctctctcatttttgctgctctggaaaatggggttaataatatctaccattctttgagc 362
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 202 tctctctcatttttgctgctctggaaaatggggttaatgatatctaccattctttgagc 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 761
Length adjustment: 9
Effective length of query: 353
Effective length of database: 752
Effective search space: 265456
Effective search space used: 265456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_a16.g1 MSMg01no548_a16.g1 CHROMAT_FILE:
MSMg01no548_a16.g1 PHD_FILE: MSMg01no548_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:51 2005
(492 letters)
>mm_chr2_151814314_151815205
Length = 892
Score = 913 bits (472), Expect = 0.0
Identities = 487/492 (98%)
Strand = Plus / Plus
Query: 1 ttggggaatttgtctggagagaagggcctctgtgcctttgaggatgtagcgtgctagctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ttggggaatttgtctggagagaagggcctctgtgcctttgaggatgtagcgtgctagcct 260
Query: 61 gtgtattcccaggggagcagcctggtggtatagataggaccagtaatagaaagctcacca 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtattcccaggggagcaacctggtggtatagataggaccagtaatagaaagctcacca 320
Query: 121 gccagttggagtaggacctgtgctttggtccaatcagctggctctttcactattgcatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccagttggagtaggacctgtgctttggtccaatcagctggctctttcactattgcatat 380
Query: 181 cctttcattgagaaggggtgtatctaagttggacagtgatggcacacaattttaatccca 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttcattgagaaggggtgcatctaagttggacagtgatggcacacaattttaatccca 440
Query: 241 gcacaggggagactgaggcaggctgctgtctatgaattcaaggtcaacctggtctataga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacaggggagactgaggcaggctgctgtctatgaattcaaggtcaacctggtctataga 500
Query: 301 gcaagtttctgaacggtcgaggctacacagagaaacccattcttaaaaagaaaagcagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaagtttctgaacggtcgaggctacacagagaaacccattcttaaaaagaaaagcagag 560
Query: 361 ggtggggtgtttctgtctgtagaatggccctgacactccactagagggccaagaggagtt 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtggggtgtttctggctgtagaatggccctgacactccactagagggccaagaggagtt 620
Query: 421 taaaggctgatgagttcaagtctaggaaccaaatagcagaatttgagttagtactgctct 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaggctgatgagttcaaggctaggaaccaaatagcagaatttgagttagtactgctct 680
Query: 481 gagcacctacca 492
||||||||||||
Sbjct: 681 gagcacctacca 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
