Query= MSMg01no548_f17.b1 MSMg01no548_f17.b1 CHROMAT_FILE:
MSMg01no548_f17.b1 PHD_FILE: MSMg01no548_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:15 2005
(572 letters)
>mm_chr2_79713997_79714958
Length = 962
Score = 940 bits (486), Expect = 0.0
Identities = 545/570 (95%), Gaps = 15/570 (2%)
Strand = Plus / Plus
Query: 5 gaattccattctttatgataaaattctaattgtcagtatagcaccagctctgagtgctat 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 205 gaattccattctttatgataaaattctaattgtcagtatagcaccaactctgagttctat 264
Query: 65 agattaacaaaccaccaactctagaatatgccataggaactgaatttataaccagctgat 124
|||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 265 ----taacaaaccaccaactctagaatatgccataggaactgaa---at---cagctgat 314
Query: 125 cagaaatcaacatttgtatgttccacttgggtctgcagtctgaca-tggagcccatcatt 183
||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct: 315 cagaaatcaacatttgtatgttccacttgggtctgaagtctga-agtggagcccatcatt 373
Query: 184 tggaagactgagcctttacttgtggaatttgaagccaactttgaataattaccatcacgt 243
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 374 tggaagagtgaggttttacttgtggaatttgaagccaactttgaataattaccatcatgt 433
Query: 244 ttatattatagtatcccaacttggaatgcaaagatgttagacagaacagggaatagcttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 434 ttatattatagtatcccaacttggaatgcaaagatgttagacagaacagggaataacttg 493
Query: 304 taaagaaacacctacaccagagaacagaggtctcctctcctgcaggtttgtatttgtcat 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 taaagaaacgcctacaccagagaacagaggtctcctctcctgcaggtttgtatttgtcat 553
Query: 364 ttcggttaggcaggtgtctgttatgctgcattttcctcagccacctttgcagctatgtat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttcggttaggcaggtgtctgttatgctgcattttcctcagccacctttgcagctatgtat 613
Query: 424 gggggtaaattttgagcaggaagatacacatagaagtttgtgtgcccccccca-tcctct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 614 gggggtaaattttgagcaggaagatacacatagaagtttgtgtgccccccccaatcctct 673
Query: 483 tgcttttctcatgtgcaagctatttatgctctcaaacttacctcttagtaacagtgtaat 542
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 674 tgcttttctcatgtgcaagctatttatgctctcaaacttaccttttagtaacagtgtaat 733
Query: 543 tctttttttttctttctttctttctttttt 572
||||||||||| |||||||||||||||||
Sbjct: 734 tcttttttttt--ttctttctttctttttt 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 962
Length adjustment: 10
Effective length of query: 562
Effective length of database: 952
Effective search space: 535024
Effective search space used: 535024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_f17.g1 MSMg01no548_f17.g1 CHROMAT_FILE:
MSMg01no548_f17.g1 PHD_FILE: MSMg01no548_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:15 2005
(633 letters)
>mm_chr2_79860642_79861674
Length = 1033
Score = 1104 bits (571), Expect = 0.0
Identities = 619/635 (97%), Gaps = 4/635 (0%)
Strand = Plus / Minus
Query: 1 agagcaaaatttcttaagttaaacaccaaaaacttgtagtaaatgtgtctgttatagcag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agagcaaactttcttaagttaaacaccaaaaacttgtagtaaatgtgtctgttatagcag 595
Query: 61 gtgaggttccaatgttttgtagtatattaacattagcagatgtgttcattgtagcaggtg 120
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gtgaagtcccaatgttttgtagtatattaacattagcagatgtgttcattgtagcaggtg 535
Query: 121 aggtcctatgtattgcaggatattaagattaacagatgcatctgttgtagccagggaggt 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 534 aggtcctatgtattgcaggatattaagattaacagatgcgtctgttgtagccagggaggt 475
Query: 181 cctttgtatagtattataataaattagcagatgtgtttgttgtagcaggtgaggtcccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cctttgtatagtattataataaattagcagatgtgtttgttgtagcaggtgaggtcccat 415
Query: 241 gtattataggatattaacattagcagatgtgtctgttgtagccatggaggtcccatgtat 300
|||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 414 gtatta-aagatattaacattagcagatctgtctgttgtagccatggaggtcccatgtat 356
Query: 301 tgtaggatattaatattagcagatgtgtctgctgtagccagtaaggctctgttgaagcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgtaggatattaatattagcagatgtgtctgctgtagccagtaaggctctgttgaagcaa 296
Query: 361 acaaatctcctcatagtacttgagactcttttt-taaaaataatttgtttacattaatac 419
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 295 acaaatctcctcacagtacttgagactctttttaaaaaaataatttgtttacattaatac 236
Query: 420 atactttggtgttttgcctacatgaatgtctgtatgagagtgttgaatcccttgtaacag 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 atactttgatgttttgcctacatgaatgtctgtatgagagtgttgaatcccttgtaacag 176
Query: 480 aagttacagacagttttaagttgttattgtgggtgctggggattgaacccaagttctact 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 175 aagttacagacagttttaagttgttattgtgggtgctggggattgaacccaagtcctact 116
Query: 540 ggaagagcagccaatgatcttaactgccgagccacctgtccagcccaagtaatcagtatt 599
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 115 ggaagagcagccaatgatcttaactgccaagccacctgtccaacccaagtaatcagtatt 56
Query: 600 ctaaat-aattacatataagtttaaacataggtat 633
|| ||| ||||||||||||||||||||||||||||
Sbjct: 55 ct-aataaattacatataagtttaaacataggtat 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
