BAC Information

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BAC

Clone NameB6Ng01-001H02
ChromosomeX (Build37)
Map Location 130,276,518 - 130,372,487
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665846, LOC665850, LOC665854, LOC100040794, Pcdh19, LOC100040831
Downstream geneTnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001H02.bB6Ng01-001H02.g
ACCDH839760DH839761
length3111,068
definitionDH839760|Mus musculus domesticus DNA, BAC clone: B6Ng01-001H02, 5' end.DH839761|Mus musculus domesticus DNA, BAC clone: B6Ng01-001H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,276,518 - 130,276,828)(130,371,413 - 130,372,487)
sequence
cactcaaatcttggctccatatatcccaatccatccttcatcagaaactg
agtttgacagcatcttgcctagagcccttggtattagtggcaccttgtca
ctcagccaggattaaaaatctacatctttctctaggagctggggggatct
gcaaccctataggtggaacaacaatatgaactaaacagtactccctggag
ctcatgtctctacatcagtggaaagaggggcccattggtcatgcaaactt
tatatgcctcagtacaggggaacgccagggccaagaagtgggagtgggtg
ggtgggggagt
gaattcttttcaggtataagacaacaatttcaaaattcatactgaagtgc
acacacacacacacacacacacacacacacacacacacacacacacacac
acagagagagagagagagagagagagagagaggagtacccaataagaatc
cctcccaaacccaactagccaaagaaatcccaagaaagcaagaaaatatt
gtaggtatcacaatacccaactccatactaaagtgaagaatcccaagtaa
taaaagccatgcagaattgacacaagaacagatatttagagcagtgaaaa
ggaataaaatgtttgtaaacacaaacacaactatgcatctacatccatct
gattcttgatgaaggaaacaaaagacaaaattggtgtaggggaaactgaa
tatagaaatgtagaaaactgaaaacaaatcaactcctcaacagactgacc
gaggattaggctggtagggactagatcaaattatgattataataaccaat
tagatacagcaccaattagatcagtcagggacaatgttggctgcctcttg
agctgtctggtgattacagcatccattatattgcccagtgtggttcttga
ccaaggcacagttaacaacatggagtgtactcatctgtctgtctgtttcc
acagaattctcctctgtaggctcattttcttttgtctgtcaaaggcctcc
agcacagatgaagaccagcataagtctgcgttttagcttcagtttctctg
acttttattttttagttgagtggggtgggtctgtactttcagacatgttg
ctggtgaaaaggaggctctcaccagacatttaatccagatagataactca
tgaatgaaattactatcaatataaaaacaatacttagaggacatacctgt
agttataccagagcccaggaaagttggagggttatcatggagtgggagag
agtagttctgatgagagatagacaaaaagagcatactggaggttccttaa
ggagagggaaatggagtcgtaactggtgacaatattgaggtatacaaggg
gaagagaaaagggagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_130276518_130276828
seq2: B6Ng01-001H02.b_53_363

seq1  CACTCAAATCTTGGCTCCATATATCCCAATCCATCCTTCATCAGAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAATCTTGGCTCCATATATCCCAATCCATCCTTCATCAGAAACTG  50

seq1  AGTTTGACAGCATCTTGCCTAGAGCCCTTGGTATTAGTGGCACCTTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGACAGCATCTTGCCTAGAGCCCTTGGTATTAGTGGCACCTTGTCA  100

seq1  CTCAGCCAGGATTAAAAATCTACATCTTTCTCTAGGAGCTGGGGGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCAGGATTAAAAATCTACATCTTTCTCTAGGAGCTGGGGGGATCT  150

seq1  GCAACCCTATAGGTGGAACAACAATATGAACTAAACAGTACTCCCTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCTATAGGTGGAACAACAATATGAACTAAACAGTACTCCCTGGAG  200

seq1  CTCATGTCTCTACATCAGTGGAAAGAGGGGCCCATTGGTCATGCAAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCTCTACATCAGTGGAAAGAGGGGCCCATTGGTCATGCAAACTT  250

seq1  TATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTG  300

seq1  GGTGGGGGAGT  311
      |||||||||||
seq2  GGTGGGGGAGT  311

seq1: chrX_130371413_130372487
seq2: B6Ng01-001H02.g_71_1138 (reverse)

seq1  TATCTCCCTTTTCTCTCTCCCTCTTTGTATTACCCTCATTATTTCTCACC  50
      ||||||||||||||||  |||   ||||||   ||||| || || |||||
seq2  TATCTCCCTTTTCTCTTCCCC---TTGTAT--ACCTCAATA-TTGTCACC  44

seq1  AGTTACGACCTCCCATTTCCCCTCTCCCTTTATAGAACCTCCGTTCTGCT  100
      |||||||||   |||||| ||||||||  |||  ||||||||  | ||||
seq2  AGTTACGAC--TCCATTT-CCCTCTCC--TTAAGGAACCTCCAGTATGCT  89

seq1  CTTTCTGTCTCTCTCTCATCAGAACTTCTCCTCTCCCACTTCCATGAT-A  149
      |||| ||||| ||||||||||||||| || ||||||||| |||||||| |
seq2  CTTTTTGTCTATCTCTCATCAGAACTACT-CTCTCCCAC-TCCATGATAA  137

seq1  CCCTCCAACTTTCCTGGGCTCTGGTATTACTCCAGGTTATGTCCTCTAAG  199
      ||||||||||||||||||||||||||| ||| |||| |||||||||||||
seq2  CCCTCCAACTTTCCTGGGCTCTGGTATAACTACAGG-TATGTCCTCTAAG  186

seq1  TATTGTTTTTATATTGATAGTAATTTCATTCATGAGTTATCTATCTGGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTTATATTGATAGTAATTTCATTCATGAGTTATCTATCTGGAT  236

seq1  TAAATGTCTGGTGAGAGCCTCC-TTTCACCAGCAACATGTCTGAAAGTAC  298
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAAATGTCTGGTGAGAGCCTCCTTTTCACCAGCAACATGTCTGAAAGTAC  286

seq1  AGACCCACCCCACTCAACT-AAAAATAAAAGTCAGAGAAACTGAAGCT-A  346
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  AGACCCACCCCACTCAACTAAAAAATAAAAGTCAGAGAAACTGAAGCTAA  336

seq1  AACGCAGACTTATGCTGGTCTTCATCTGTGCTGGAGGCCTTTGACAGAC-  395
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACGCAGACTTATGCTGGTCTTCATCTGTGCTGGAGGCCTTTGACAGACA  386

seq1  AAAGAAAATGAGCCTACAGAGGAGAATTCTGTGGAAACAGACAGACAGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATGAGCCTACAGAGGAGAATTCTGTGGAAACAGACAGACAGAT  436

seq1  GAGTACACTCCATGTTGTTAACTGTGCCTTGGTCAAGAACCACACTGGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACTCCATGTTGTTAACTGTGCCTTGGTCAAGAACCACACTGGGC  486

seq1  AATATAATGGATGCTGTAATCACCAGACAGCTCAAGAGGCAGCCAACATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATGGATGCTGTAATCACCAGACAGCTCAAGAGGCAGCCAACATT  536

seq1  GTCCCTGACTGATCTAATTGGTGCTGTATCTAATTGGTTATTATAATCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGACTGATCTAATTGGTGCTGTATCTAATTGGTTATTATAATCAT  586

seq1  AATTTGATCTAGTCCCTACCAGCCTAATCCTCGGTCAGTCTGTTGAGGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATCTAGTCCCTACCAGCCTAATCCTCGGTCAGTCTGTTGAGGAG  636

seq1  TTGATTTGTTTTCAGTTTTCTACATTTCTATATTCAGTTTCCCCTACACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGTTTTCAGTTTTCTACATTTCTATATTCAGTTTCCCCTACACC  686

seq1  AATTTTGTCTTTTGTTTCCTTCATCAAGAATCAGATGGATGTAGATGCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCTTTTGTTTCCTTCATCAAGAATCAGATGGATGTAGATGCAT  736

seq1  AGTTGTGTTTGTGTTTACAAACATTTTATTCCTTTTCACTGCTCTAAATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTTTGTGTTTACAAACATTTTATTCCTTTTCACTGCTCTAAATA  786

seq1  TCTGTTCTTGTGTCAATTCTGCATGGCTTTTATTACTTGGGATTCTTCAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTGTGTCAATTCTGCATGGCTTTTATTACTTGGGATTCTTCAC  836

seq1  TTTAGTATGGAGTTGGGTATTGTGATACCTACAATATTTTCTTGCTTTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATGGAGTTGGGTATTGTGATACCTACAATATTTTCTTGCTTTCT  886

seq1  TGGGATTTCTTTGGCTAGTTGGGTTTGGGAGGGATTCTTATTGGGTACTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTCTTTGGCTAGTTGGGTTTGGGAGGGATTCTTATTGGGTACTC  936

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTC--TGTGTGTGTGTGTGTGTGT  993
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGT  986

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACTTCAGTATGAATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACTTCAGTATGAATTT  1036

seq1  TGAAATTGTTGTCTTATACCTGAAAAGAATTC  1075
      ||||||||||||||||||||||||||||||||
seq2  TGAAATTGTTGTCTTATACCTGAAAAGAATTC  1068