MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-001K05
Chromosome	X (Build37)
Map Location	118,798,984 - 118,799,876
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Pcdh11x, LOC245576, LOC385419, EG434907
Downstream gene	EG245575, LOC100039544, Nap1l3
Link	Open Mouse BAC browser

Click to get alignment info.

name	Pcdh11x (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245578 MGI:2442849
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC245576 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:245576
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 Proteins pseudo : _no_value

name	LOC385419 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 Proteins pseudo : _no_value

name	EG434907 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434907 MGI:3647868
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 329 ESTs, 8 Proteins

name	EG245575 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245575 MGI:3647043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 13 Proteins

name	LOC100039544 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039544
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	Nap1l3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54561 MGI:1859565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pcdh11x (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487050 GeneID:245578 MGI:2442849
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protocadherin 11 X-linked transcript_id : NM_001081385.1

name	EG434907 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149272151 GeneID:434907 MGI:3647868
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 329 ESTs, 8 Proteins product : predicted gene, EG434907 transcript_id : XM_486849.5

name	EG245575 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149272153 GeneID:245575 MGI:3647043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 13 Proteins product : predicted gene, EG245575 transcript_id : XM_142100.7

name	Nap1l3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20270268 GeneID:54561 MGI:1859565
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleosome assembly protein 1-like 3 transcript_id : NM_138742.1

name	Pcdh11x (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487051 GeneID:245578 MGI:2442849
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 product : protocadherin 11 X-linked protein_id : NP_001074854.1

name	EG434907 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149272152 GeneID:434907 MGI:3647868
definition	codon_start : 1 product : similar to Ubiquitin-like, containing PHD and RING finger domains, 1 protein_id : XP_486849.5

name	EG245575 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149272154 GeneID:245575 MGI:3647043
definition	codon_start : 1 product : similar to RIKEN cDNA 9230105E10 gene protein_id : XP_142100.7

name	Nap1l3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270269 CCDS:CCDS30372.1 GeneID:54561 MGI:1859565
definition	codon_start : 1 product : nucleosome assembly protein 1-like 3 protein_id : NP_620081.1

name	LOC245576 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:245576
definition	number : 1 pseudo : _no_value

name	LOC245576 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:245576
definition	number : 2 pseudo : _no_value

name	LOC385419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385419
definition	number : 2 pseudo : _no_value

name	LOC385419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385419
definition	number : 1 pseudo : _no_value

name	LOC100039544 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149272157 GeneID:100039544
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3 pseudo : _no_value transcript_id : XR_031017.1

clone name	MSMg01-467O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533E22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-435D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049D13
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-001K05.b	B6Ng01-001K05.g
ACC	DH839901	DH839902
length	990	1,190
definition	DH839901\|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K05, 5' end.	DH839902\|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K05, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattccatgaagtcactgtagctgagtagttctccattgtaaaaatctt cctcattttgtgtatccattcttctgttgagggacatctgggttctttcc agcttctgactcttataaatatggctgagatgaacatagtgaagcatgtt tccctcaacagaagagaaggaataccaaaatgtggatattttggtccttc ttagaaggggaaacaaaatacccatttgaggagatacagagacaaagtgt ggaacagagatgaaaggaaaggctgtccagagactgccccacctgggaat gcttcacatatacagttacaaaacccagacactattgtggatgtcaacaa gtacttgctgaaaggaactacttttaacatcaccaataagcaactaatga ggtcatgtatcttaaaatagaatctattaccaccactttcctaattagta caatttctaactgcattctaaataactaccctgaaacagtgtttaccttt atctgacctaaaagctttttttttttcagtagacagtggccattacaaag ggcttaatccagtcaaaattcagagaacagctgactatgctttgcctagt cacaattaatacactataacaaaaatcctgtacccaaggctcaagaaata tttcacatctaagaaaacaagtgaataagattttaagggccataggacta agaaatctgccatgatatagtaacttctagctataacagggaaaatttac caatgaaatttcaacagaaatgtttatgcaagtaaccaaatctaacaata gttgacattctgatatatatgagagagttattacagtgcccaaaccttac ataaaaatcttcaagtgattaactacttctgtgagagagaaaattaatct ttctcaaggataaagctcttagtggttattcaatacagagggctaagcat tggaagcctatatataaatggacactgaataaactgagca	gaattcctaatctttctaagacttttagcataaagggatgttggatgttg ttaaatgatttctcagcatttaacgagattattatgtggtttttgtcttt gagtttgtttatatagtggattacatttatggatttccatatttttaacc cccccccccgctgtgtccttggtatgaagcctacttgatcatgatgtatc atcattttgatatgttcttggattcagtttgcaagaattttatagagtat tttgcatcaatattcataagataaattggtctgaagttagcattctttgt tgggcctttgtgtggtttaggtatcagagtaattgtgacttcattgaacg aattgggtagaataccttctatttctattttgtcgaataatttgaggaga attggaattaggacttaattgaaagtatgatagaactctgcactaaaccc atctggtcctgggctttttttttggttgggagactattaatgactgtttc tatttctttaggggatatgcggctgtttagatcattaatatgatcctgat ttaaatttggtacctggtatctgtctagaaaaattgttcatttcttccag attttccagttttgtttagtagaggcttttgaagtagaatctgacgattt tttggatttcctcagattctgttgttatgtctcccttttcatttctgatt ttcttaattagcatactgtccttgtgccctctagttagtgtggttaaggt tcttctatcttgttgattttctgaaagaaccagatcctgctttggtttat gctttgtatagttctttttgtttccacttggatgatttaagcacttagtt gcattatttgctgctgtcctcacctctttggtgaattagcttccttttgt cgatgactttaagtgtgctgttaagctgctagttaatgctccctcagttt cttttggaggcactcagagtgatgagtttcctctagactgctttcatgag tacataggttagggtatgttgtgtctcatttcataactctaaaagttttt aatgtggagcaataaaactactgtcagagtcccagtgtcatggcgaatca atgctattctcgtagaggtcagttcgtcaaatctgacataagtccgatga accaattctttggttcttaaggctagggttaacgcaggcg
quality values	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chrX_118798984_118799876
seq2: B6Ng01-001K05.b_44_936

seq1  GAATTCCATGAAGTCACTGTAGCTGAGTAGTTCTCCATTGTAAAAATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAGTCACTGTAGCTGAGTAGTTCTCCATTGTAAAAATCTT  50

seq1  CCTCATTTTGTGTATCCATTCTTCTGTTGAGGGACATCTGGGTTCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTTGTGTATCCATTCTTCTGTTGAGGGACATCTGGGTTCTTTCC  100

seq1  AGCTTCTGACTCTTATAAATATGGCTGAGATGAACATAGTGAAGCATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGACTCTTATAAATATGGCTGAGATGAACATAGTGAAGCATGTT  150

seq1  TCCCTCAACAGAAGAGAAGGAATACCAAAATGTGGATATTTTGGTCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAACAGAAGAGAAGGAATACCAAAATGTGGATATTTTGGTCCTTC  200

seq1  TTAGAAGGGGAAACAAAATACCCATTTGAGGAGATACAGAGACAAAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGGGAAACAAAATACCCATTTGAGGAGATACAGAGACAAAGTGT  250

seq1  GGAACAGAGATGAAAGGAAAGGCTGTCCAGAGACTGCCCCACCTGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAGATGAAAGGAAAGGCTGTCCAGAGACTGCCCCACCTGGGAAT  300

seq1  GCTTCACATATACAGTTACAAAACCCAGACACTATTGTGGATGTCAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACATATACAGTTACAAAACCCAGACACTATTGTGGATGTCAACAA  350

seq1  GTACTTGCTGAAAGGAACTACTTTTAACATCACCAATAAGCAACTAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGCTGAAAGGAACTACTTTTAACATCACCAATAAGCAACTAATGA  400

seq1  GGTCATGTATCTTAAAATAGAATCTATTACCACCACTTTCCTAATTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGTATCTTAAAATAGAATCTATTACCACCACTTTCCTAATTAGTA  450

seq1  CAATTTCTAACTGCATTCTAAATAACTACCCTGAAACAGTGTTTACCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTAACTGCATTCTAAATAACTACCCTGAAACAGTGTTTACCTTT  500

seq1  ATCTGACCTAAAAGCTTTTTTTTTTTCAGTAGACAGTGGCCATTACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCTAAAAGCTTTTTTTTTTTCAGTAGACAGTGGCCATTACAAAG  550

seq1  GGCTTAATCCAGTCAAAATTCAGAGAACAGCTGACTATGCTTTGCCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAATCCAGTCAAAATTCAGAGAACAGCTGACTATGCTTTGCCTAGT  600

seq1  CACAATTAATACACTATAACAAAAATCCTGTACCCAAGGCTCAAGAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTAATACACTATAACAAAAATCCTGTACCCAAGGCTCAAGAAATA  650

seq1  TTTCACATCTAAGAAAACAAGTGAATAAGATTTTAAGGGCCATAGGACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCTAAGAAAACAAGTGAATAAGATTTTAAGGGCCATAGGACTA  700

seq1  AGAAATCTGCCATGATATAGTAACTTCTAGCTATAACAGGGAAAATTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGCCATGATATAGTAACTTCTAGCTATAACAGGGAAAATTTAC  750

seq1  CAATGAAATTTCAACAGAAATGTTTATGCAAGTAACCAAATCTAACAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAATTTCAACAGAAATGTTTATGCAAGTAACCAAATCTAACAATA  800

seq1  GTTGACATTCTGATATATATGAGAGAGTTATTACAGTGCCCAAACCTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATTCTGATATATATGAGAGAGTTATTACAGTGCCCAAACCTTAC  850

seq1  ATAAAAATCTTCAAGTGATTAACTACTTCTGTGAGAGAGAAAA  893
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATCTTCAAGTGATTAACTACTTCTGTGAGAGAGAAAA  893

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Alignment Information