BAC Information

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BAC

Clone NameB6Ng01-003C22
ChromosomeX (Build37)12 (Build37)
Map Location 56,130,822 - 56,131,94585,171,080 - 85,171,220
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZic3, LOC631581, LOC631621
Downstream gene4930550L24Rik, Fgf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003C22.bB6Ng01-003C22.g
ACCDH840973DH840974
length1,114157
definitionDH840973|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C22, 5' end.DH840974|Mus musculus domesticus DNA, BAC clone: B6Ng01-003C22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,130,822 - 56,131,945)(85,171,080 - 85,171,220)
sequence
gaattcatataaatgacaagttttgggtgtcgttacacagtttgaattgc
taatagaattttaggtagtaatggagtcttaaacacattatttgggttca
gattttctcccccgttgtagtttttacttttataagattatactgaattt
tgcttcatcatgtgtgctatatttccttttcttactaaattaacatataa
ttttaattatatatttatatatgttctgtatgtgagatctgtcaagagtt
tttcttctgcttcattggacttacttattctatgataatatcatgcattc
aaattaattttgaaaaagaatatttcttttacatattttattaatgaatt
atacacatttctttatcctgttaaatgtaggactaacttaacttaaataa
taaattttattattgatgcaataagcatatgagtgactgtagtgtacaga
gtattttgtgtgcactggggaatggggtctttatcttcagtgtcctggca
taggtcatacttgaatcgtggcagttttgtttccttcaattttgttttca
gggttttttggtggttttaattctttaaagcagttactaggagagcaaaa
actaatattttatttattcttattctaaccttaccatcttctttattata
attgcaataggtggtgctatactaacattcactcccttggcctatcacat
atagcatggatcttttgccaaattagaaagtggactgctatacaggagaa
ttagaaagaaggtaaaacattgagctaatggatatctaaggaaggaatgg
ttgtgctttagggcctgggagaggatgcttgatgaaagtttgagtcattg
attcaataaagcagtttaattgattctcagagtttggtgtaatagattgt
tagcttctaactccaggcggtggctattataagcccagcatttcacactg
atgatgagggaaactccctacagcactggaaaagccatttcagctcagta
gatagatatagtgtcaaccggtgtgaacatgctagtggaaagcatcacag
ttcccatagagtatcctgcctagtatgagcatcagatcttatggcatgta
cagcatgcatgtga
cacagagatagctatgataaagtctgagtttgagaaagggccttcttctc
ttactctccatcccctgttccccctctctccacatggccatggccagcct
ctgattctcttctctctctctttctctgcctttttacaataaatgcctta
aaaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_56130822_56131945
seq2: B6Ng01-003C22.b_45_1158

seq1  GAATTCATATAAATGACAAGTTTTGGGTGTCGTTACACAGTTTGAATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAAATGACAAGTTTTGGGTGTCGTTACACAGTTTGAATTGC  50

seq1  TAATAGAATTTTAGGTAGTAATGGAGTCTTAAACACATTATTTGGGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAATTTTAGGTAGTAATGGAGTCTTAAACACATTATTTGGGTTCA  100

seq1  GATTTTCTCCCCCGTTGTAGTTTTTACTTTTATAAGATTATACTGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTCCCCCGTTGTAGTTTTTACTTTTATAAGATTATACTGAATTT  150

seq1  TGCTTCATCATGTGTGCTATATTTCCTTTTCTTACTAAATTAACATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATCATGTGTGCTATATTTCCTTTTCTTACTAAATTAACATATAA  200

seq1  TTTTAATTATATATTTATATATGTTCTGTATGTGAGATCTGTCAAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTATATATTTATATATGTTCTGTATGTGAGATCTGTCAAGAGTT  250

seq1  TTTCTTCTGCTTCATTGGACTTACTTATTCTATGATAATATCATGCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGCTTCATTGGACTTACTTATTCTATGATAATATCATGCATTC  300

seq1  AAATTAATTTTGAAAAAGAATATTTCTTTTACATATTTTATTAATGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTTTGAAAAAGAATATTTCTTTTACATATTTTATTAATGAATT  350

seq1  ATACACATTTCTTTATCCTGTTAAATGTAGGACTAACTTAACTTAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATTTCTTTATCCTGTTAAATGTAGGACTAACTTAACTTAAATAA  400

seq1  TAAATTTTATTATTGATGCAATAAGCATATGAGTGACTGTAGTGTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTATTATTGATGCAATAAGCATATGAGTGACTGTAGTGTACAGA  450

seq1  GTATTTTGTGTGCACTGGGGAATGGGGTCTTTATCTTCAGTGTCCTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTGTGCACTGGGGAATGGGGTCTTTATCTTCAGTGTCCTGGCA  500

seq1  TAGGTCATACTTGAATCGTGGCAGTTTTGTTTCCTTCAATTTTGTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATACTTGAATCGTGGCAGTTTTGTTTCCTTCAATTTTGTTTTCA  550

seq1  GGGTTTTTTGGTGGTTTTAATTCTTTAAAGCAGTTACTAGGAGAGCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTGGTGGTTTTAATTCTTTAAAGCAGTTACTAGGAGAGCAAAA  600

seq1  ACTAATATTTTATTTATTCTTATTCTAACCTTACCATCTTCTTTATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATTTTATTTATTCTTATTCTAACCTTACCATCTTCTTTATTATA  650

seq1  ATTGCAATAGGTGGTGCTATACTAACATTCACTCCCTTGGCCTATCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATAGGTGGTGCTATACTAACATTCACTCCCTTGGCCTATCACAT  700

seq1  ATAGCATGGATCTTTTGCCAAATTAGAAAGTGGACTGCTATACAGGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATGGATCTTTTGCCAAATTAGAAAGTGGACTGCTATACAGGAGAA  750

seq1  TTAGAAAGAAGGTAAAACATTGAGCTAATGGATATCTAAGGAAGGAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGAAGGTAAAACATTGAGCTAATGGATATCTAAGGAAGGAATGG  800

seq1  TTGTGCTTTAGGGCCTGGGAGAGGATGCTTGATGAAAGTTTGAGTCATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTAGGGCCTGGGAGAGGATGCTTGATGAAAGTTTGAGTCATTG  850

seq1  ATTCAATAAAGCAGTTTAATTGATTCTCAGAGTTTGGTGTAATAGATTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATAAAGCAGTTTAATTGATTCTCAGAGTTTGGTGTAATAGATTGT  900

seq1  TAGCTTCTAACTCCAGGCGGTGGCTATTATAAGCCCAGCATTTCACACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTAACTCCAGGCGGTGGCTATTATAAGCCCAGCATTTCACACTG  950

seq1  ATGATGAGGGAAAACTCCCTACAGCAACTGGAAAAGCCATTTCAGCTCAG  1000
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  ATGATGAGGG-AAACTCCCTACAGC-ACTGGAAAAGCCATTTCAGCTCAG  998

seq1  TAGAATAGATATAGTGTCAACCGGTGTGAACATGCTAGTGGAAAGCAATC  1050
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAG-ATAGATATAGTGTCAACCGGTGTGAACATGCTAGTGGAAAGC-ATC  1046

seq1  ACAGTTCCCATTAGAAGTATCCTGCCTAGTAATGAGCATCAGATCTTAAT  1100
      |||||||||| ||| ||||||||||||||| |||||||||||||||| ||
seq2  ACAGTTCCCA-TAG-AGTATCCTGCCTAGT-ATGAGCATCAGATCTT-AT  1092

seq1  GGCATTGTACAGCATTGCATGTGA  1124
      |||| ||||||||| |||||||||
seq2  GGCA-TGTACAGCA-TGCATGTGA  1114

seq1: chr12_85171080_85171220
seq2: B6Ng01-003C22.g_143_228 (reverse)

seq1  TTGGTTTTAAGGCATTTATTGTAGAAAGGTGGAGGGAGGGAGGGAGGAAG  50
      ||||||||||||||||||||||| |||||                     
seq2  TTGGTTTTAAGGCATTTATTGTAAAAAGG---------------------  29

seq1  GGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAAAGAGAGAGAGAGAAAG  100
                                  |||||||||||||||||     
seq2  ---------------------------CAGAGAAAGAGAGAGAGA-----  47

seq1  AGAGAGAGAGAGAGGCTGGCAATGGCCACATGGAGAGAGGG  141
        |||||   |||||||||| |||||||  |||||||||||
seq2  --AGAGAATCAGAGGCTGGCCATGGCCATGTGGAGAGAGGG  86