BAC Information

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BAC

Clone NameB6Ng01-003H23
ChromosomeX (Build37)
Map Location 92,007,220 - 92,144,807
singlet/doubletdoublet
Overlap geneLOC631331, EG631319, Zxda
Upstream genePdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb
Downstream geneGm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003H23.bB6Ng01-003H23.g
ACCDH841191DH841192
length752968
definitionDH841191|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H23, 5' end.DH841192|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,144,053 - 92,144,807)(92,007,220 - 92,007,831)
sequence
gaattcacctgcctctgcctcccaagtactaggaataaaggcctctgcca
ccactgcctgacaaccctaaaactcttaaacctcaaaaataaaacactaa
aattataaaaaaaaaaaaaaaaacaactcaagaacactaaaaaaaaccca
aaaaatgttaaaccctaaaagaaaccataaagcctaaaaaatttagcccc
caaacctaacatacactaaaatcctttaaaaaaccggaaaaaaacactaa
atatacactaagccctgaataccacaaaatactactaaaacactcttcta
aaaaccataaaaaaccctttttaaaaacccctaagctgggcggtgatggc
ccacacctttaaaaccagcacttgggaggcagaggcaggcaaatttctga
gttcaaagccagcctggtctagacagtgagttccaggacagccagggcta
cacagagaaaccctgtctcaaaaaaaagaagaaaaaaataaagagcaagc
aagagacacagaaagaaacagcctaaacttttaaaaataaatgcataaga
acccaaaaatgaccctaaaacattatttttttgaattttcgagactgggt
ttctctatgtctatacctggctgtcctggaactcactgtgtagaccaggc
tggcttcgaactcaaaaaatctcttgcctctgcctcccaggtactggtat
taaaggcatgggccatactgcctgacaaccctaaaaatcttaacccccaa
aa
gaattccactaacaacatagaaagttagcagtataagttactcatgttta
gaatattacagggatgatttaacaggtgaaatattaagccactaaatatt
ataaggaaaacaaacattatataattatgtaaatgttatattgatttgaa
tttgaaatagttggttatatccatagactattgtatataaacctcttggg
aaccataaagcaacaacctagagaagatcatgtacacgcgcacacaaata
aattaaaacaatctaatacatgccactatggaaacccctcaaatcataaa
acagaggaaaaaataaaagttatgcaaagcaatcagaaaacaaataataa
aataacagtagtgtatagttacctatctatagttactttaaatacagata
tattaaaaacttcaatcaatagacataaggtggctgcaatggttactttt
aattgtcaagttgacacaatctaaaaccacctgagaaaaggacctctggg
aatatattaagggattataggtaattatgctaatgtgggaagacccactc
attgtaggtggtatcattccctagaaagaagatttgaactatataagggt
ggagaaagcaagctgagtattggcacacatgcatccattgctgtctgttc
ataattttgaatgtgatatgaccaattccttcaatctcttgtcatagctt
ctgctgtgacttccttgctatagggagaaaactaagagagtggttgaata
aatttttaaaaactcaattcaaataactcaactatttgattcacattacc
ttagtaaacatactaaaagtacagggttgaggatggatatttcattcaaa
tataaatcaaaagtgaacaggcatagctatactttattgcagcaaaatat
atgcagatacattataaatcaataaaaaataacatcgcataatgacagat
ggatcaattcatcagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_92144053_92144807
seq2: B6Ng01-003H23.b_44_796 (reverse)

seq1  TTTTTGGGGTTGAAGAGTTTTAGGGTTGTCAGGCAGTAGTGGCCCATGCC  50
       |||||||| | |||| ||||||||||||||||||||| |||||||||||
seq2  -TTTTGGGGGTTAAGATTTTTAGGGTTGTCAGGCAGTA-TGGCCCATGCC  48

seq1  TTTAATCCCAGTACTTGGGAGACAGAGGCAGGAGATTTTCTGAGTTCGAG  100
      |||||| ||||||| |||||| |||||||| |||||||| ||||||||| 
seq2  TTTAATACCAGTACCTGGGAGGCAGAGGCAAGAGATTTTTTGAGTTCGAA  98

seq1  GCCAGCCTGGTATACAGAGTGAGTTCCAGGACAGCCAGGTATAGACATAG  150
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACACAGTGAGTTCCAGGACAGCCAGGTATAGACATAG  148

seq1  AGAAACCCAGTCTCGAAAATTCAAAAAAATAATGTTTTAGGGTCATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCAGTCTCGAAAATTCAAAAAAATAATGTTTTAGGGTCATTTTT  198

seq1  GGGTTCTTATGCATTTATTTTTAAAAGTTTAGGCTGTTTCTTTCTGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTATGCATTTATTTTTAAAAGTTTAGGCTGTTTCTTTCTGTGTC  248

seq1  TCTTGCTTGCTCTTTATTTTTTTCTTCTTTTTTTTGAGACAGGGTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTGCTCTTTATTTTTTTCTTCTTTTTTTTGAGACAGGGTTTCTC  298

seq1  TGTGTAGCCCTGGCTGTCCTGGAACTCACTGTCTAGACCAGGCTGGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGTCCTGGAACTCACTGTCTAGACCAGGCTGGCTTT  348

seq1  GAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGTTTTAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGTTTTAAAGGT  398

seq1  GTGGGCCATCACCGCCCAGCTTAGGGGTTTTTAAAAAGGGTTTTTTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCATCACCGCCCAGCTTAGGGGTTTTTAAAAAGGGTTTTTTATGG  448

seq1  TTTTTAGAAGAGTGTTTTAGTAGTATTTTGTGGTATTCAGGGCTTAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAAGAGTGTTTTAGTAGTATTTTGTGGTATTCAGGGCTTAGTGT  498

seq1  ATATTTAGTGTTTTTTTCCGGTTTTTTAAAGGATTTTAGTGTATGTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGTGTTTTTTTCCGGTTTTTTAAAGGATTTTAGTGTATGTTAGG  548

seq1  TTTGGGGGCTAAATTTTTTAGGCTTTATGGTTTCTTTTAGGGTTTAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGCTAAATTTTTTAGGCTTTATGGTTTCTTTTAGGGTTTAACAT  598

seq1  TTTTTGGGTTTTTTTTAGTGTTCTTGAGTTGTTTTTTTTTTTTTTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGTTTTTTTTAGTGTTCTTGAGTTGTTTTTTTTTTTTTTTTTAT  648

seq1  AATTTTAGTGTTTTATTTTTGAGGTTTAAGAGTTTTAGGGTTGTCAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGTGTTTTATTTTTGAGGTTTAAGAGTTTTAGGGTTGTCAGGCA  698

seq1  GTGGTGGCAGAGGCCTTTATTCCTAGTACTTGGGAGGCAGAGGCAGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCAGAGGCCTTTATTCCTAGTACTTGGGAGGCAGAGGCAGGTGA  748

seq1  ATTCC  755
      |||||
seq2  ATTCC  753

seq1: chrX_92007220_92007831
seq2: B6Ng01-003H23.g_66_677

seq1  GAATTCCACTAACAACATAGAAAGTTAGCAGTATAAGTTACTCATGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAACAACATAGAAAGTTAGCAGTATAAGTTACTCATGTTTA  50

seq1  GAATATTACAGGGATGATTTAACAGGTGAAATATTAAGCCACTAAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTACAGGGATGATTTAACAGGTGAAATATTAAGCCACTAAATATT  100

seq1  ATAAGGAAAACAAACATTATATAATTATGTAAATGTTATATTGATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAAACAAACATTATATAATTATGTAAATGTTATATTGATTTGAA  150

seq1  TTTGAAATAGTTGGTTATATCCATAGACTATTGTATATAAACCTCTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATAGTTGGTTATATCCATAGACTATTGTATATAAACCTCTTGGG  200

seq1  AACCATAAAGCAACAACCTAGAGAAGATCATGTACACGCGCACACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAAGCAACAACCTAGAGAAGATCATGTACACGCGCACACAAATA  250

seq1  AATTAAAACAATCTAATACATGCCACTATGGAAACCCCTCAAATCATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACAATCTAATACATGCCACTATGGAAACCCCTCAAATCATAAA  300

seq1  ACAGAGGAAAAAATAAAAGTTATGCAAAGCAATCAGAAAACAAATAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAAAAAATAAAAGTTATGCAAAGCAATCAGAAAACAAATAATAA  350

seq1  AATAACAGTAGTGTATAGTTACCTATCTATAGTTACTTTAAATACAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGTAGTGTATAGTTACCTATCTATAGTTACTTTAAATACAGATA  400

seq1  TATTAAAAACTTCAATCAATAGACATAAGGTGGCTGCAATGGTTACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAACTTCAATCAATAGACATAAGGTGGCTGCAATGGTTACTTTT  450

seq1  AATTGTCAAGTTGACACAATCTAAAACCACCTGAGAAAAGGACCTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCAAGTTGACACAATCTAAAACCACCTGAGAAAAGGACCTCTGGG  500

seq1  AATATATTAAGGGATTATAGGTAATTATGCTAATGTGGGAAGACCCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAAGGGATTATAGGTAATTATGCTAATGTGGGAAGACCCACTC  550

seq1  ATTGTAGGTGGTATCATTCCCTAGAAAGAAGATTTGAACTATATAAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGGTGGTATCATTCCCTAGAAAGAAGATTTGAACTATATAAGGGT  600

seq1  GGAGAAAGCAAG  612
      ||||||||||||
seq2  GGAGAAAGCAAG  612