BAC Information

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BAC

Clone NameB6Ng01-004O05
ChromosomeX (Build37)
Map Location 89,578,721 - 89,704,403
singlet/doubletdoublet
Overlap geneMageb18
Upstream geneEG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259, EG668061
Downstream geneEG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx, Pola1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O05.bB6Ng01-004O05.g
ACCDH842179DH842180
length1,1151,108
definitionDH842179|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O05, 5' end.DH842180|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,578,721 - 89,579,850)(89,703,271 - 89,704,403)
sequence
gaattccatgtgtgagggtggactgggagtgagtactctcagaaatggaa
acgtgaatgtcaccctttcaatgttattaaaattaagacatgctgacagc
actttgcttaaacgaggtttatcagttgttactgttataaggtacagctt
caatctagatgtgccctaacaggcactaatcttataggtgttgtttagct
gcccacacagcagaggtatatactataaaaagctgaaatggaaataatgt
catatacttggaaattctatgacaagaattctactgccatcaagagtatc
tttgcttcatagcaggataaatgtttctctaattcactttaggaaacact
gaagctttgctgaagaaatagccatactggctccccaaagcaccatgaaa
atactctctctgcaccaaacagcaatttatttcagaataacaatttgaat
tttgacataaaatgagcaattcattgaaacaattggtgttgttaaacatt
aatttgtgatgactattagggagatgcacacataatgattcttagacact
aaaagcaatcccttttttttcttttttcttttctttttttttttttttgg
tttccaaatgtaacatttgtgtggttgttttgctttggtgtctaaagtgc
tacacatttattataaattaatacacctatctgcaaatgttatacagact
tttacctctctgaaattactaaatcccactccatctctaaatgctttaat
ttctttcatttctccaacaattatcttatatctttgcagggatttgctga
cttccaaaatgataaggacacttgaaaacctgaaggagattcaaatttcc
acttcacttggtacttaattataaaccattttttgtataatgattgttgg
acagctgcaggggaaaatcattaaccttccctgaataaatctaacatatc
ccccaataaaacctttgctctctagatcataatgtacagagctagaaaca
attgctctgtgtttctactgtagcagttctgaacaaatattacgaatgtt
aacattgtctttggatacagataagattttggagtatgatctgctccttc
acaatggtgcaactg
gaattcagggccagccaaagaccttgtctcacaaaccaagatcaatggca
gctaaagagtgaccatagaaactgatgtctagcttccaagtatcatggac
acacatacgcacccacataaatggtggtgataaatgatgagtttagtcgg
ctgatagcatttttttctaccccaaactggctttgccattataatttttt
tagaataacttcagaaatctgacataagattccttggtattccccatccc
cttttttgcctatggcaatataaaaataaacagggagcttggaaaatttt
tgagaatgcttgtaggaaagagaaaatatcttgtggcaacccctggaaca
ttaggggttttaaaatacactgaaacccagagttgaagcaggtcatttgc
taaagatcctattgatcaccaagttaggatgataattgaagaggtgggac
tgctttgtaaatgataaacatgtgatagctttgaaagctataagtagcaa
tactaactaagtatttggatgagctcagagaagagaaggcattacttggt
atgtatgtacatgctggggatctgaacttggaagctattgcgtgctgatg
gctgcatgcaaataaacaccaagtaatgaatcatatgcctatgatctcag
cactggcgaagcagacaagaagatctttgttgcttgcttagcaatataat
ctaatcacttgatgacatctaggttcaatgagaaactctgtacacacaca
cacacacacacacacacacttttattgagacacggttttattgtgtagct
ctggctgtcctagaactcactgtgtagaccagactggcctggaacataca
gcaatctacttgtctctgcctcccaagtgctgggataaaaggcatgcacc
accacacttagttctgaatatagtaatatagatagaaattgaagacacgg
acaatgacctttgtactcacacacatgtgtagcatgtaacatactacata
cacatgtggacactttacactgagcatttctctatcttcttcactttagg
aaatttcataatatgtataatcataaaactacaatttatcttctattctg
aaagataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_89578721_89579850
seq2: B6Ng01-004O05.b_47_1161

seq1  GAATTCCATGTGTGAGGGTGGACTGGGAGTGAGTACTCTCAGAAATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGTGAGGGTGGACTGGGAGTGAGTACTCTCAGAAATGGAA  50

seq1  ACGTGAATGTCACCCTTTCAATGTTATTAAAATTAAGACATGCTGACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAATGTCACCCTTTCAATGTTATTAAAATTAAGACATGCTGACAGC  100

seq1  ACTTTGCTTAAACGAGGTTTATCAGTTGTTACTGTTATAAGGTACAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTTAAACGAGGTTTATCAGTTGTTACTGTTATAAGGTACAGCTT  150

seq1  CAATCTAGATGTGCCCTAACAGGCACTAATCTTATAGGTGTTGTTTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGATGTGCCCTAACAGGCACTAATCTTATAGGTGTTGTTTAGCT  200

seq1  GCCCACACAGCAGAGGTATATACTATAAAAAGCTGAAATGGAAATAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACAGCAGAGGTATATACTATAAAAAGCTGAAATGGAAATAATGT  250

seq1  CATATACTTGGAAATTCTATGACAAGAATTCTACTGCCATCAAGAGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTTGGAAATTCTATGACAAGAATTCTACTGCCATCAAGAGTATC  300

seq1  TTTGCTTCATAGCAGGATAAATGTTTCTCTAATTCACTTTAGGAAACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCATAGCAGGATAAATGTTTCTCTAATTCACTTTAGGAAACACT  350

seq1  GAAGCTTTGCTGAAGAAATAGCCATACTGGCTCCCCAAAGCACCATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTGCTGAAGAAATAGCCATACTGGCTCCCCAAAGCACCATGAAA  400

seq1  ATACTCTCTCTGCACCAAACAGCAATTTATTTCAGAATAACAATTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCTCTGCACCAAACAGCAATTTATTTCAGAATAACAATTTGAAT  450

seq1  TTTGACATAAAATGAGCAATTCATTGAAACAATTGGTGTTGTTAAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATAAAATGAGCAATTCATTGAAACAATTGGTGTTGTTAAACATT  500

seq1  AATTTGTGATGACTATTAGGGAGATGCACACATAATGATTCTTAGACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGATGACTATTAGGGAGATGCACACATAATGATTCTTAGACACT  550

seq1  AAAAGCAATCCCTTTTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAATCCCTTTTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTGG  600

seq1  TTTCCAAATGTAACATTTGTGTGGTTGTTTTGCTTTGGTGTCTAAAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAATGTAACATTTGTGTGGTTGTTTTGCTTTGGTGTCTAAAGTGC  650

seq1  TACACATTTATTATAAATTAATACACCTATCTGCAAATGTTATACAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTTATTATAAATTAATACACCTATCTGCAAATGTTATACAGACT  700

seq1  TTTACCTCTCTGAAATTACTAAATCCCACTCCATCTCTAAATGCTTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCTCTGAAATTACTAAATCCCACTCCATCTCTAAATGCTTTAAT  750

seq1  TTCTTTCATTTCTCCAACAATTATCTTATATCTTTGCAGGGATTTGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATTTCTCCAACAATTATCTTATATCTTTGCAGGGATTTGCTGA  800

seq1  CTTCCAAAATGATAAGGACACTTGAAAACCTGAAGGAGATTCAAATTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAATGATAAGGACACTTGAAAACCTGAAGGAGATTCAAATTTCC  850

seq1  ACTTCACTTGGTACTTAATTATAAACCATTTTTGTAATAATGATTGTTGG  900
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  ACTTCACTTGGTACTTAATTATAAACCATTTTTTGTATAATGATTGTTGG  900

seq1  ACAGCTGCAGGGGGAAAATCATTAACCTTCCCTGAATAAATCTAACATAT  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCA-GGGGAAAATCATTAACCTTCCCTGAATAAATCTAACATAT  949

seq1  CCCCCAATAAAACCTTTGCTCTCTAGGATCATAATGTAACAGAGCTAGAT  1000
      ||||||||||||||||||||||||| ||||||||||| ||||||||||| 
seq2  CCCCCAATAAAACCTTTGCTCTCTA-GATCATAATGT-ACAGAGCTAGAA  997

seq1  ACAATTGCTCTGGTGTTTTCTTACTTGTAGCAGGTTCTGAACAATATTTA  1050
      ||||||||||| ||||||   ||| ||||||| |||||||||||   |||
seq2  ACAATTGCTCT-GTGTTT--CTAC-TGTAGCA-GTTCTGAACAAATATTA  1042

seq1  CAGATGTTAACATTTGTCTGTGGATACAGATAAAGATTTTTGAGGTTAAT  1100
      |  ||||||||| |||||| ||||||||||| |||||||| |||    ||
seq2  CGAATGTTAACA-TTGTCTTTGGATACAGAT-AAGATTTTGGAG---TAT  1087

seq1  GATTCTGGCTCTCTCACAATGGTGCAACTG  1130
      || ||| ||||  |||||||||||||||||
seq2  GA-TCT-GCTCCTTCACAATGGTGCAACTG  1115

seq1: chrX_89703271_89704403
seq2: B6Ng01-004O05.g_69_1176 (reverse)

seq1  TTATCTTTTCAGGGAATAGGAAAAGATAAAATTGTAGGTTTTTATGGAAT  50
      ||||| |||||  ||||||   ||||| |||||||||  |||||| || |
seq2  TTATC-TTTCA--GAATAG---AAGAT-AAATTGTAG--TTTTAT-GATT  40

seq1  ATAACATATATATGAAAATTTCCTAAAAGGTGGAAGGAAGATAGAGAAAT  100
      || |||||| |||| ||||||||||||  |||  | ||||||||||||||
seq2  AT-ACATAT-TATG-AAATTTCCTAAA--GTG--AAGAAGATAGAGAAAT  83

seq1  GGCTCAGTTGGTAAAGTGTCCACATGTGTATGTAGGTATGGTTACATGCT  150
       |||||||  |||||||||||||||||||||||| |||| ||||||||| 
seq2  -GCTCAGT--GTAAAGTGTCCACATGTGTATGTA-GTAT-GTTACATGC-  127

seq1  TACACATGTGTGTGGAGTACAAAGGTCATTGTCCCTTGTCTTCAATTTCT  200
      ||||||||||||| |||||||||||||||||| || ||||||||||||||
seq2  TACACATGTGTGT-GAGTACAAAGGTCATTGT-CCGTGTCTTCAATTTCT  175

seq1  ATCTATATTACTATATTCAGAACTAAGTGTGGTGGTGCATGCCTTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATTACTATATTCAGAACTAAGTGTGGTGGTGCATGCCTTTTATC  225

seq1  CCAGCACTTGGGAGGCAGAGACAAGTAGATTGCTGTATGTTCCAGGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAGGCAGAGACAAGTAGATTGCTGTATGTTCCAGGCCAG  275

seq1  TCTGGTCTACACAGTGAGTTCTAGGACAGCCAGAGCTACACAATAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTACACAGTGAGTTCTAGGACAGCCAGAGCTACACAATAAAACC  325

seq1  GTGTCTCAATAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAATAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGAGTT  375

seq1  TCTCATTGAACCTAGATGTCATCAAGTGATTAGATTATATTGCTAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGAACCTAGATGTCATCAAGTGATTAGATTATATTGCTAAGCAA  425

seq1  GCAACAAAGATCTTCTTGTCTGCTTCGCCAGTGCTGAGATCATAGGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAAGATCTTCTTGTCTGCTTCGCCAGTGCTGAGATCATAGGCATA  475

seq1  TGATTCATTACTTGGTGTTTATTTGCATGCAGCCATCAGCACGCAATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATTACTTGGTGTTTATTTGCATGCAGCCATCAGCACGCAATAGC  525

seq1  TTCCAAGTTCAGATCCCCAGCATGTACATACATACCAAGTAATGCCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTTCAGATCCCCAGCATGTACATACATACCAAGTAATGCCTTCT  575

seq1  CTTCTCTGAGCTCATCCAAATACTTAGTTAGTATTGCTACTTATAGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGAGCTCATCCAAATACTTAGTTAGTATTGCTACTTATAGCTTT  625

seq1  CAAAGCTATCACATGTTTATCATTTACAAAGCAGTCCCACCTCTTCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTATCACATGTTTATCATTTACAAAGCAGTCCCACCTCTTCAATT  675

seq1  ATCATCCTAACTTGGTGATCAATAGGATCTTTAGCAAATGACCTGCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTAACTTGGTGATCAATAGGATCTTTAGCAAATGACCTGCTTCA  725

seq1  ACTCTGGGTTTCAGTGTATTTTAAAACCCCTAATGTTCCAGGGGTTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGTTTCAGTGTATTTTAAAACCCCTAATGTTCCAGGGGTTGCCA  775

seq1  CAAGATATTTTCTCTTTCCTACAAGCATTCTCAAAAATTTTCCAAGCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATTTTCTCTTTCCTACAAGCATTCTCAAAAATTTTCCAAGCTCC  825

seq1  CTGTTTATTTTTATATTGCCATAGGCAAAAAAGGGGATGGGGAATACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATTTTTATATTGCCATAGGCAAAAAAGGGGATGGGGAATACCAA  875

seq1  GGAATCTTATGTCAGATTTCTGAAGTTATTCTAAAAAAATTATAATGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTTATGTCAGATTTCTGAAGTTATTCTAAAAAAATTATAATGGCA  925

seq1  AAGCCAGTTTGGGGTAGAAAAAAATGCTATCAGCCGACTAAACTCATCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTTTGGGGTAGAAAAAAATGCTATCAGCCGACTAAACTCATCAT  975

seq1  TTATCACCACCATTTATGTGGGTGCGTATGTGTGTCCATGATACTTGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACCACCATTTATGTGGGTGCGTATGTGTGTCCATGATACTTGGAA  1025

seq1  GCTAGACATCAGTTTCTATGGTCACTCTTTAGCTGCCATTGATCTTGGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACATCAGTTTCTATGGTCACTCTTTAGCTGCCATTGATCTTGGTT  1075

seq1  TGTGAGACAAGGTCTTTGGCTGGCCCTGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  TGTGAGACAAGGTCTTTGGCTGGCCCTGAATTC  1108