BAC Information

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BAC

Clone NameB6Ng01-004P20
ChromosomeX (Build37)10 (Build37)
Map Location 31,668,751 - 31,669,352104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneLOC100039419
Upstream gene1700017G21Rik, LOC665014, EG546205, LOC100040533, LOC100039328, LOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662
Downstream geneLOC100039429, LOC100040698, LOC630028, LOC100040722, LOC100040732, LOC100040743, LOC385298, LOC100039460, LOC100040781, LOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004P20.bB6Ng01-004P20.g
ACCDH842250DH842251
length931800
definitionDH842250|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P20, 5' end.DH842251|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,668,751 - 31,669,352)(104,053,903 - 104,054,363)
sequence
gaattccttataacctcttggaacaagaaatagataaacgtgttcatcac
acttttagaaattggcttttaaaaacaaaacaggggcagttatatccccc
gaggtcaccaaaggcacatcttgcttttactttatttgttctaaattttt
tgcaaactgatgttaaaagtcagtctgcagtggatcgccactggcatcag
ttacttctagtttatatgccatggtaaagtggcaggacccatttactaat
gaatggaagggtccagaccgggtcctaatctgggaaaagggcttggtctg
tgttttttcacaaaaagaagatggacctcgatggctgcctgagagattag
ttcgacaactagacacagatccttaatcttctagtaagtagaactttaac
cttgattatggctaaaagtcctctttagccaaaaagttaaattagagcac
agcctccactcccagggaagctgtaagcctttttgcaattctcaaagtca
cctccaccacacagggagctctaagtctagcctgatctttgctaatttgc
aattgaatggagtacctggacttccccaaaagaagcttttgtactgtgcc
tttcactgtctcaactttgttttttttaagcagttcagttaacgcccttc
accctgattgaggctgacacgtatccccgcccacaacagtgagcaagtgg
cagttattaatttttatcaagaggaattctaagtatatattgtgactttg
gtctgatttgggaataaggtgcgctatgagggctggttagtcaatgacag
gcaacagatcccagaacataccaatctaagacaggggtacatgccaaaag
gccatggctgttaataatacaccataaagacatgcttgtatgaattatga
cataaactagctatatgtaacttcctatgaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatt
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcggtctggcggttcctca
gaaaattggaaatagtactaaaggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaagagaatgaatttatgaaattcctagccca
atggatggacctggagggcatcatcctgagtgagggaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatatcatcccaaaacc
taggatacccaagatataagatacaagttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacaccctttggaaggagttacagagacaaagtttggagctgagatg
aaaggatggtccatatccagggatccaccccataatcagcatccaaacgc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_31668751_31669352
seq2: B6Ng01-004P20.b_341_943

seq1  GTCTGTGTTTTTTCACAAAAAGGAGATGGAGCGCGATGGCTGCCTGAGAG  50
      |||||||||||||||||||||| ||||||| | |||||||||||||||||
seq2  GTCTGTGTTTTTTCACAAAAAGAAGATGGACCTCGATGGCTGCCTGAGAG  50

seq1  ATTAGTTCGACAACTAGACACAGATCCTGAATCTTCTAGTAAGTATGACT  100
      |||||||||||||||||||||||||||| ||||||||||||||||  |||
seq2  ATTAGTTCGACAACTAGACACAGATCCTTAATCTTCTAGTAAGTAGAACT  100

seq1  CTAACCTTGATCATGGCTAAAAATCCTTTTTAGCCAAAAAGTTAAATTAG  150
       |||||||||| |||||||||| |||| ||||||||||||||||||||||
seq2  TTAACCTTGATTATGGCTAAAAGTCCTCTTTAGCCAAAAAGTTAAATTAG  150

seq1  AGCACAGCCGCCACTCCCAGGGATGCTGTAAGCCTTTCTGCAATTCTCAA  200
      ||||||||| ||||||||||||| ||||||||||||| ||||||||||||
seq2  AGCACAGCCTCCACTCCCAGGGAAGCTGTAAGCCTTTTTGCAATTCTCAA  200

seq1  AACCACCTCCCCCACACCGGGAGCTCTAAGTCTGGCCTGATCATTGCTGA  250
      |  ||||||| |||||| ||||||||||||||| |||||||| ||||| |
seq2  AGTCACCTCCACCACACAGGGAGCTCTAAGTCTAGCCTGATCTTTGCTAA  250

seq1  TTTACAATTGAATGGAGTACCTGGACTTCCCCAAAAGAAGCTTTTGTACT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATTGAATGGAGTACCTGGACTTCCCCAAAAGAAGCTTTTGTACT  300

seq1  GTGCCTTTCACTGTCTGGACTTTG--TTTTTCAAGCAGGTCAGTCAACAC  348
      ||||||||||||||||  ||||||  ||||| |||||| ||||| ||| |
seq2  GTGCCTTTCACTGTCTCAACTTTGTTTTTTTTAAGCAGTTCAGTTAACGC  350

seq1  CCTTCAGCCTGACTGCAGTGGGCATGCATTCCCACCCCCAACAGCACGCA  398
      |||||| ||||| ||  |  | || | || ||| ||| ||||||   |||
seq2  CCTTCACCCTGATTGAGGCTGACACGTATCCCCGCCCACAACAGTGAGCA  400

seq1  GGTGGCAGTTATTAATTTTCATCAAGAAGAATTCTAAGTACATATTGTGG  448
       |||||||||||||||||| ||||||| |||||||||||| |||||||| 
seq2  AGTGGCAGTTATTAATTTTTATCAAGAGGAATTCTAAGTATATATTGTGA  450

seq1  CTTTGGTCTGATTTGGGAATAAGGTGTGCTATGAGGGCAGGTTAGTCAAT  498
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  CTTTGGTCTGATTTGGGAATAAGGTGCGCTATGAGGGCTGGTTAGTCAAT  500

seq1  GACAGGCAACCAGATCCCGGATCATACCAATCTAAGACAGGGGTACATGC  548
      ||||||||| |||||||| || ||||||||||||||||||||||||||||
seq2  GACAGGCAA-CAGATCCCAGAACATACCAATCTAAGACAGGGGTACATGC  549

seq1  CAAAAGTCCGTGGCTGTTGATAATACACCACAGAGCCATGCTTGTGTAAA  598
      |||||| || |||||||| ||||||||||| | || ||||||||| | ||
seq2  CAAAAGGCCATGGCTGTTAATAATACACCATAAAGACATGCTTGTATGAA  599

seq1  TTAT  602
      ||||
seq2  TTAT  603

seq1: chr10_104053903_104054363
seq2: B6Ng01-004P20.g_69_539 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCT  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
       ||||||||| ||||||||||||| |||||||||||| ||||||||||||
seq2  TTAGTACTATTTCCAATTTTCTGAGGAACCGCCAGACCGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGACA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAAAATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471