BAC Information

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BAC

Clone NameB6Ng01-005B19
Chromosome6 (Build37)X (Build37)
Map Location 54,213,427 - 54,214,188159,217,424 - 159,218,127
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305
Downstream geneChn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005B19.bB6Ng01-005B19.g
ACCDH842340DH842341
length763828
definitionDH842340|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B19, 5' end.DH842341|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,213,427 - 54,214,188)(159,217,424 - 159,218,127)
sequence
gaattctcccctctctgcctgttcttcagggattactgagattacagatg
tgtgctgcacacatgattgtatgtaaaggaatttggactcacactcctgt
cctccttgcactgcaggctcgttacccggcagctactgagcatctcctac
cccttaagaccttgctctatgtttctccgcagtgactttctagctcatca
acctctgtgtttactgtctgcttactgacatccctctccctgtttactcg
cctaaccctgtgcttgataaacaacggctactttagaaagattggctgaa
gaaaacaagggacaagatatatttctgctttttatccaagaataattttc
ttgccttaaaaacgggccaaggtcaaattacttgtggtcctttcacaatg
aactgtcttgacctgtaagacttggccttgcatgttggtgtgacccgtgc
tcctcacagaactgtagccacaactgtggccatggaacatcaccacactc
tgactcccctgaggccactcccttggccttatgcatgttttaccaaatgg
tagagtctgaaaatcccagcctccacccactacagaggctagaaggaagc
tgaaattctatgtggaatgcacaagtctctatatgcaattcactatactg
actcctctatactgggccagccgcaaccgcacatctgggagagacatcaa
atgggtggttttgttggggtgaatgttcactgtactacgtaacttccgga
ttggagatgtttt
gaattctctacttaatgttccccatgtcttttgtcctctgtcggctgtat
gaatctgaatctacctgaaccaatatctttgtctaaaatgtgtcttgtgt
gtgtgtgtgcacttgaggggagggagggagggcatccttctttgaggtcc
catctgttttcattcacaggaggagagattttgcatatgcatatttcata
cagaatctctgtcctctaaagatctagctgaaaatgcatgtaagccgaaa
gcagcaggccaggactgttaatcgcattgctttataaagcccttgaaaat
atgcaatattccacacaggacaagtaccacaaaaatgtggcaggctacac
acatggcttaatcaaatgttaagagctgtgtatccagcagacttgtgaaa
tgtaatcattagtagtaattttcaatatttctgacacgttcatggggaaa
aagtccagtattttgataagaggctactgaaagggttttttttgttgttt
ctgacttcactttttttcactttcttttactttttgaccccttgattagt
ttagaaaaataaccatctacagggactgtttttctggcttttggccattt
tttcaattatttgaacctagatttgaccataaaaataaaatgtgctaagg
agtataaatgacattttttagccaattgaacaagtcagtctctgaatatg
gtgctttatagaactttaataaatttacttaccaagacccaggtaattgc
atggctgaagcaataaataaccaagtgccaaaacataatactggtttttt
attgttttaaggtgaaagcactcaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54213427_54214188
seq2: B6Ng01-005B19.b_44_806

seq1  GAATTCTCCCCTCTCTGCCTCTTCTTCCACAGGAGTACTGAGATTACAGA  50
      |||||||||||||||||||| ||||||    ||| |||||||||||||||
seq2  GAATTCTCCCCTCTCTGCCTGTTCTTC--AGGGATTACTGAGATTACAGA  48

seq1  TGTGTGCTGCACACCTGATTGTATGT-AGCTTCTTTGGACTCACACTCCT  99
      |||||||||||||| ||||||||||| |     |||||||||||||||||
seq2  TGTGTGCTGCACACATGATTGTATGTAAAGGAATTTGGACTCACACTCCT  98

seq1  GTCCTCCTTGCACTGCAGGCTCGTTACCCGGCAGCTACTGAGCATCTCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTTGCACTGCAGGCTCGTTACCCGGCAGCTACTGAGCATCTCCT  148

seq1  AGCCCTTAAGACCTTGCTCTATGTTTCTCCGCAGTGACTTTCTAGCTCAT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTAAGACCTTGCTCTATGTTTCTCCGCAGTGACTTTCTAGCTCAT  198

seq1  CAACCTCTGTGTTTACTGTCTGCTTACTGACATCCCTCTCCCTGTTTACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTGTGTTTACTGTCTGCTTACTGACATCCCTCTCCCTGTTTACT  248

seq1  CGCCTAACCCTGTGCTTGATAAACAACGGCTACTTTAGAAAGATTGGCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTAACCCTGTGCTTGATAAACAACGGCTACTTTAGAAAGATTGGCTG  298

seq1  AAGAAGAGAAGGGACAAGATATATTTCTGCAGTTTATCCAAGAATAATTT  349
      ||||| | ||||||||||||||||||||||  ||||||||||||||||||
seq2  AAGAAAACAAGGGACAAGATATATTTCTGCTTTTTATCCAAGAATAATTT  348

seq1  TCTTGCCTTAAAAACGGGCCAAGGTCAAATTACTTGTGGTCCTTTCAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTTGCCTTAAAAACGGGCCAAGGTCAAATTACTTGTGGTCCTTTCACAA  398

seq1  TGAACTGTCTTGTCCTGGAAGAGTTGGCCTTGCATGTTGGTGTGACCCGT  449
      |||||||||||| |||| |||| |||||||||||||||||||||||||||
seq2  TGAACTGTCTTGACCTGTAAGACTTGGCCTTGCATGTTGGTGTGACCCGT  448

seq1  GCTCCTCACAGAGCTGTAGCCACAACTGTGGCCATGGAACATCACCACAC  499
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCACAGAACTGTAGCCACAACTGTGGCCATGGAACATCACCACAC  498

seq1  TCTGACTCCCCTGAGGCCACAGACTTGGCCTTATGCAGGTTTTACCAAAT  549
      ||||||||||||||||||||   |||||||||||||| ||||||||||||
seq2  TCTGACTCCCCTGAGGCCACTCCCTTGGCCTTATGCATGTTTTACCAAAT  548

seq1  GGTAGAGTCTGAAAATCCCAGCCTCCACCCACTACAGAGGCTAGAAGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTCTGAAAATCCCAGCCTCCACCCACTACAGAGGCTAGAAGGAA  598

seq1  GCTGAAATTCTATGTGGAATGCACAAGTCTCTATATGCAGTTCAGAATAC  649
      ||||||||||||||||||||||||||||||||||||||| ||||  ||||
seq2  GCTGAAATTCTATGTGGAATGCACAAGTCTCTATATGCAATTCACTATAC  648

seq1  TGAGTCCTCTATACTGGGCAAGCCGCAGCCGCACAGCTGGGAGTGGCATC  699
      ||| ||||||||||||||| ||||||| ||||||| ||||||| | ||||
seq2  TGACTCCTCTATACTGGGCCAGCCGCAACCGCACATCTGGGAGAGACATC  698

seq1  AAA-GGGTGG-TTTGTTTGGGTGATTGTTCACTGTACAAAGCACAGTAGG  747
      ||| |||||| |||||| |||||| |||||||||||| | | |   |  |
seq2  AAATGGGTGGTTTTGTTGGGGTGAATGTTCACTGTACTACGTAACTTCCG  748

seq1  GATTGGAGATGTTTT  762
      |||||||||||||||
seq2  GATTGGAGATGTTTT  763

seq1: chrX_159217424_159218127
seq2: B6Ng01-005B19.g_186_896

seq1  GGGAGGGAGGGAGGGCATCCTTCTTTGAGGTCCCATCTGTTTTCATTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGGGAGGGCATCCTTCTTTGAGGTCCCATCTGTTTTCATTCAC  50

seq1  AGGAGGAGAGATTTTGCATATGCATATTTCATACAGAATCTCTGTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAGATTTTGCATATGCATATTTCATACAGAATCTCTGTCCTCT  100

seq1  AAAGATCTAGCTGAAAATGCATGTAAGCCGAAAGCAGCAGGCCAGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTAGCTGAAAATGCATGTAAGCCGAAAGCAGCAGGCCAGGACTG  150

seq1  TTAATCGCATTGCTTTATAAAGCCCTTGAAAATATGCAATATTCCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCGCATTGCTTTATAAAGCCCTTGAAAATATGCAATATTCCACACA  200

seq1  GGACAAGTACCACAAAAATGTGGCAGGCTACACACATGGCTTAATCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGTACCACAAAAATGTGGCAGGCTACACACATGGCTTAATCAAAT  250

seq1  GTTAAGAGCTGTGTATCCAGCAGACTTGTGAAATGTAATCATTAGTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCTGTGTATCCAGCAGACTTGTGAAATGTAATCATTAGTAGTA  300

seq1  A-TTTCAATATTTCTGACACGTTCATGGGGAAAAAGTCCAGTA-TTTGAT  348
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTTTCAATATTTCTGACACGTTCATGGGGAAAAAGTCCAGTATTTTGAT  350

seq1  AAGAGGCTACTGAAAGGG-TTTTTTTGTTGTTTCTGACTTCAC-TTTTTT  396
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  AAGAGGCTACTGAAAGGGTTTTTTTTGTTGTTTCTGACTTCACTTTTTTT  400

seq1  CAC-TTCTTTTAC-TTTTGACCCCTTGATTAGTTTAGAAAAATAACCATC  444
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTTTTACTTTTTGACCCCTTGATTAGTTTAGAAAAATAACCATC  450

seq1  TACAGGGACTG-TTTTCTGGCTTTTGGCCATTTTTTCAATTATTTGAACC  493
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGACTGTTTTTCTGGCTTTTGGCCATTTTTTCAATTATTTGAACC  500

seq1  TAGATTTGACCATAAAAATAAAATGTGCTAAGGAGTATAAATGA-AATTT  542
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  TAGATTTGACCATAAAAATAAAATGTGCTAAGGAGTATAAATGACATTTT  550

seq1  TTAGCCAATTGAACAAGTCAGTCTCTGAATATGGTGCTTTACTAGAACCT  592
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  TTAGCCAATTGAACAAGTCAGTCTCTGAATATGGTGCTTTA-TAGAA-CT  598

seq1  TTAATAAATTTACTTTACCAAAGACCTAGTAATTTGCATGGCTG-AGCCA  641
      ||||||||||||| ||||| |||||| ||  | ||||||||||| ||| |
seq2  TTAATAAATTTAC-TTACC-AAGACCCAGGTAATTGCATGGCTGAAGCAA  646

seq1  TAAATATCAAAGTGTCAAACATTAATACTGG-TTTTTATTGTTTTAAAGT  690
      |||||| | ||||| ||||   ||||||||| ||||||||||||||| ||
seq2  TAAATAACCAAGTGCCAAAACATAATACTGGTTTTTTATTGTTTTAAGGT  696

seq1  GATAGCA-TCAAAAA  704
      || |||| |||||||
seq2  GAAAGCACTCAAAAA  711