BAC Information

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BAC

Clone NameB6Ng01-005D09
ChromosomeX (Build37)1 (Build37)
Map Location 38,563,273 - 38,564,45861,720,183 - 61,720,701
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039769
Downstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D09.bB6Ng01-005D09.g
ACCDH842409DH842410
length1,1581,070
definitionDH842409|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D09, 5' end.DH842410|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,563,273 - 38,564,458)(61,720,183 - 61,720,701)
sequence
gaattctctatacttaattttcaatggatgtatcttattggcttgacaat
gatgtcctaaaatagtctataattcaacataaagtgtatgatatagtcat
tagcagagaagttaacaggaaggaaaaattagcttcagtggttaagaaaa
aaaatggttggggtagctgaattaatttacctatatgtttcctttttctt
tgtaaaggcaaatttttcatcttattaggcattatcttttaagagcatca
tatctagcaactagtaggagcacaatcaaaatagaatagagacaacattt
taagaaatggtcccttgtttgatctgtcttaccagaagataaactaaaaa
atgaaactaaaaacaaacctgaatgtatttgctgaaatgaccttttaatc
aaatcaggaagaacgtctagaaaattttattgatgtatgatcttaattat
tcatattaatttaagctctttacaggttcaatagctgccagtatctgcta
ctgcagggttttttttttttttcttttttgtctatctatggagtccaagg
cagtttgaagtgggttcactgaatagctcaccaggtccactgttttctca
ctttctgtcccattttgttattattctaaattgtttttgaatggaaaaga
tacaaatacttttcattgtgcacatggggctttctcccactgagcacaaa
gtaattgctgtatttacttagatagcctctgctgcagcagttataatgac
tattactgctcactgggaatccattctgcgtaatatattaggccaaattc
tatgtcttggtccatttagaagcatacttccttttgttgtagataattaa
tatcattctaccacttgaaaaacattctaagctggtcagtatagatgtag
aaagaacaatttatttttccttgtgttaggtattctacgtagcacatgct
gggtttttatgcactgctggcatttagatatgattaattagaaaacacaa
aattatttcatcagacatctcttctgcttcacaaatgcttcatgtttgac
atttcacaatgcccttcatctcaaggagcatttactggctaacaaggaat
ttattttcaaaaaaggctgagtccaacgttcctaccttatgagactttgg
aggatctg
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatgggtgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaa
ttaggattttgtccctgtgccctttagtgagtctagctaagggtttatct
atcttgtttgatttctcaaagaaccaactcctcgtttgggttaattcttt
gaatacttcttcttgtttccacttggttgatttcacccctgagtttgatt
atttcctgccgtctacttcctcttgggtgaatttgcttccttttttctag
ggcttttagtgtgttgtcaagctgctagtatgtgctgtccccgtttcttc
ttggaggcactcaggagctatgagtttccctctttagaatgctttcatgg
gtccattgtgtttgggtacgtggtgctttcatttcattatacttctaaaa
tgtctttaatttctttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38563273_38564458
seq2: B6Ng01-005D09.b_46_1203 (reverse)

seq1  CAGATCCTCCCAAAGCTCCATAACGTTAGAGAACTGTGTGAACCTCAGCC  50
      |||||||| ||||||   ||||| | ||| |||| ||  ||  |||||||
seq2  CAGATCCT-CCAAAGTCTCATAA-GGTAG-GAAC-GTTGGA--CTCAGCC  44

seq1  TTTTTTATGAAAAATAAAATTCCCTCTGGTTAAGGCAAAGTAAAATGCTC  100
      |||||  ||||||   ||||||   || ||||  ||  ||| ||||||||
seq2  TTTTT--TGAAAA--TAAATTC---CTTGTTA--GC-CAGT-AAATGCTC  83

seq1  CTTTGAGATTGAAGGGGCACTGTGAAATTGTCCAAAACCATGAAGCATTT  150
      | |||||| |||| ||||| ||||||| ||||   || ||||||||||||
seq2  C-TTGAGA-TGAA-GGGCATTGTGAAA-TGTC---AAACATGAAGCATTT  126

seq1  GTGAAGCAGGAGGAGGTTGTTCTGATGGATATATTTTGTGTTTTCTTAAT  200
      |||||||| || ||| |   ||||||| |   ||||||||||||| ||||
seq2  GTGAAGCA-GAAGAGAT--GTCTGATGAAATAATTTTGTGTTTTC-TAAT  172

seq1  TAATCATTATCTAAATGCCAGCAGTGCAT-AAAACCCAGCATGTGCTACG  249
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  TAATCA-TATCTAAATGCCAGCAGTGCATAAAAACCCAGCATGTGCTACG  221

seq1  TAGAATACCTAACACAAGGAAAAATAAATTGTTCTTTCTACATCTATACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACCTAACACAAGGAAAAATAAATTGTTCTTTCTACATCTATACT  271

seq1  GACCAGCTTAGAATGTTTTTCAAGTGGTAGAATGATATTAATTATCTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTTAGAATGTTTTTCAAGTGGTAGAATGATATTAATTATCTACA  321

seq1  ACAAAAGGAAGTATGCTTCTAAATGGACCAAGACATAGAATTTGGCCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGAAGTATGCTTCTAAATGGACCAAGACATAGAATTTGGCCTAA  371

seq1  TATATTACGCAGAATGGATTCCCAGTGAGCAGTAATAGTCATTATAACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACGCAGAATGGATTCCCAGTGAGCAGTAATAGTCATTATAACTG  421

seq1  CTGCAGCAGAGGCTATCTAAGTAAATACAGCAATTACTTTGTGCTCAGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCAGAGGCTATCTAAGTAAATACAGCAATTACTTTGTGCTCAGTG  471

seq1  GGAGAAAGCCCCATGTGCACAATGAAAAGTATTTGTATCTTTTCCATTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGCCCCATGTGCACAATGAAAAGTATTTGTATCTTTTCCATTCA  521

seq1  AAAACAATTTAGAATAATAACAAAATGGGACAGAAAGTGAGAAAACAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTTAGAATAATAACAAAATGGGACAGAAAGTGAGAAAACAGTG  571

seq1  GACCTGGTGAGCTATTCAGTGAACCCACTTCAAACTGCCTTGGACTCCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTGAGCTATTCAGTGAACCCACTTCAAACTGCCTTGGACTCCAT  621

seq1  AGATAGACAAAAAAGAAAAAAAAAAAAAACCCTGCAGTAGCAGATACTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGACAAAAAAGAAAAAAAAAAAAAACCCTGCAGTAGCAGATACTGG  671

seq1  CAGCTATTGAACCTGTAAAGAGCTTAAATTAATATGAATAATTAAGATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTGAACCTGTAAAGAGCTTAAATTAATATGAATAATTAAGATCA  721

seq1  TACATCAATAAAATTTTCTAGACGTTCTTCCTGATTTGATTAAAAGGTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAATAAAATTTTCTAGACGTTCTTCCTGATTTGATTAAAAGGTCA  771

seq1  TTTCAGCAAATACATTCAGGTTTGTTTTTAGTTTCATTTTTTAGTTTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAAATACATTCAGGTTTGTTTTTAGTTTCATTTTTTAGTTTATC  821

seq1  TTCTGGTAAGACAGATCAAACAAGGGACCATTTCTTAAAATGTTGTCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTAAGACAGATCAAACAAGGGACCATTTCTTAAAATGTTGTCTCT  871

seq1  ATTCTATTTTGATTGTGCTCCTACTAGTTGCTAGATATGATGCTCTTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTTGATTGTGCTCCTACTAGTTGCTAGATATGATGCTCTTAAA  921

seq1  AGATAATGCCTAATAAGATGAAAAATTTGCCTTTACAAAGAAAAAGGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGCCTAATAAGATGAAAAATTTGCCTTTACAAAGAAAAAGGAAA  971

seq1  CATATAGGTAAATTAATTCAGCTACCCCAACCATTTTTTTTCTTAACCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGGTAAATTAATTCAGCTACCCCAACCATTTTTTTTCTTAACCAC  1021

seq1  TGAAGCTAATTTTTCCTTCCTGTTAACTTCTCTGCTAATGACTATATCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTAATTTTTCCTTCCTGTTAACTTCTCTGCTAATGACTATATCAT  1071

seq1  ACACTTTATGTTGAATTATAGACTATTTTAGGACATCATTGTCAAGCCAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTATGTTGAATTATAGACTATTTTAGGACATCATTGTCAAGCCAA  1121

seq1  TAAGATACATCCATTGAAAATTAAGTATAGAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||
seq2  TAAGATACATCCATTGAAAATTAAGTATAGAGAATTC  1158

seq1: chr1_61720183_61720701
seq2: B6Ng01-005D09.g_619_1137 (reverse)

seq1  AAAGAAAGAAATTAAAGACTTTTTAG-AGTTTAATGAAAATGAAGACACA  49
      ||||||||||||||||||| |||||| ||| ||||| |||||||  ||| 
seq2  AAAGAAAGAAATTAAAGACATTTTAGAAGTATAATG-AAATGAAAGCACC  49

seq1  ACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACT  99
      ||||||||||||  |  |||| | |||||||||||   ||||||||||||
seq2  ACGTACCCAAACACAATGGAC-CCATGAAAGCATTCTAAAGAGGGAAACT  98

seq1  CATAGC-GCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGC  148
      ||||||  ||||||||||||||||||||||||| ||||||||||||||||
seq2  CATAGCTCCTGAGTGCCTCCAAGAAGAAACGGG-GACAGCACATACTAGC  147

seq1  AGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACC  198
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  AGCTTGACAACACA-CTAAAAGCCCTAG-AAAAAAGGAAGCAAATTCACC  195

seq1  CAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAAC  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAAC  245

seq1  CAAGTGGAAACAAGAAGAACTATTCAAAGAATTAA-CCAAACGAGGAGTT  296
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  CAAGTGGAAACAAGAAGAAGTATTCAAAGAATTAACCCAAACGAGGAGTT  295

seq1  GGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACT  346
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  GGTTCTTTGAGAAATCAAACAAGATAGATAAACCCTTAGCTAGACTCACT  345

seq1  AAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGG  395

seq1  AGACATAACAACAGATCCTGAAG-AAATCCAAAACACCATCAGATCCTTC  445
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGACATAACAACAGATCCTGAAGAAAATCCAAAACACCATCAGATCCTTC  445

seq1  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAA  495

seq1  ATTTCTGGACAGATACCAGGTACC  519
      ||||||||||||||||||||||||
seq2  ATTTCTGGACAGATACCAGGTACC  519