BAC Information

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BAC

Clone NameB6Ng01-005E13
ChromosomeX (Build37)
Map Location 72,860,722 - 73,007,264
singlet/doubletdoublet
Overlap geneEG635243
Upstream geneEG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b
Downstream genePls3, LOC635275, EG635295, LOC667537, LOC385472, LOC100041147, EG238829, Magea7, 4930428D18Rik, EG544974, 4930468A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E13.bB6Ng01-005E13.g
ACCDH842460DH842461
length902570
definitionDH842460|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E13, 5' end.DH842461|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,006,371 - 73,007,264)(72,860,722 - 72,861,291)
sequence
gaattcacagatgcagtggtctaggatcttagaagactgggagacccgat
tttgtttctttgtctgcctgtctgtctctgtcctttctatctgtccccct
gcctctctgtctctgtctttgtctctgtctgtcttctgtctctctctgtc
tctcaccatctctctctacctctctctctctctccctctctgtttgtgtc
tgtgtatgtattcagtgtgtgtcccatggtcaaaaacctaggagactcaa
gtccctgaaggaggtccatcttgattcagggtttggcagttcttatggtg
ttgagctcggtattgtgtgagaaggacaggtttggctgtaggggaaaccc
tcaaggcttcaaatgtattcccaggccataggtcaggtgtgcaggaggtg
cataaagatcctagggctaaggcaggggtattgtcccctatacttctgtt
caggtggatgagacaactgtgtaacactaatatggagggtggctggatca
gtccttccttgtggttgcaggccttgcacctctgagaactcagagcaggc
ctgcctgtgcagacagaactctcttggttgtattagagcagatccctcct
gcaatttggtagggagggagaattgagaggcaatgtcaggcttgtctcct
cgagactgttagaggggtcttcttccaccagctgtgaactaagatctcag
gagttgcgaggctggacctctggagattctcagtgctcatgaaaggaagg
cttgcctgtgggaggggaaatcatttctcacatggtcatggtatacatca
tgtggaaccaaagagacccatctgccctggaaactgtgcatggaactata
catattggtatccagaggcagagtatagatatgtaagttggtaggtaggt
ag
gaattctttgataagcatgaagaaacttcttttttatattattattcaat
gtttgtcacatagtcttattttacttttctgtcttgtctcctagaaatta
ctagtattaatttccaaagttttgtcattgtaagaatgctacagaagttg
atctatatggaatgtaacattttggaattggtctttcattaaggaaagta
acttgaatggtagcaaatttgtatttttgttagtagtccatttttattgc
tgagttgtattctgtagtacagatataacaaggctggttcaatcactcac
attttgaatgatatttgaaaatttacattactatttaactcgtgtacatg
tttttgtttgaatataaatcatttatttggaataaatattcagaaatata
gtggctgtttttaaaaagaaattgtgacactattttccaaaatggtttta
acatttaggatttctaccagtaatgtataaaatactcaatttttatatac
tggctgaatgaaaaagaaaaatagaaaaaaaaaaggaaacatgactgttc
ctaggtatggtgtgcaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_73006371_73007264
seq2: B6Ng01-005E13.b_46_947 (reverse)

seq1  CTACCTACCTACC--------TATCTATTCTCTGCCTCTGGATTACCAAT  42
      |||||||||||||        ||||||| ||||||||||||| |||||||
seq2  CTACCTACCTACCAACTTACATATCTATACTCTGCCTCTGGA-TACCAAT  49

seq1  ATGTATAGTTCCATGCACAGTTTCCAGGGCAGATGGGTCTCTTTGGTTCC  92
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGTTCCATGCACAGTTTCCAGGGCAGATGGGTCTCTTTGGTTCC  99

seq1  ACATGATGTATACCATGACCATGTGAGAAATGATTTCCCCTCCCACAGGC  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGTATACCATGACCATGTGAGAAATGATTTCCCCTCCCACAGGC  149

seq1  AAGCCTTCCTTTCATGAGCACTGAGAATCTCCAGAGGTCCAGCCTCGC-A  191
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGCCTTCCTTTCATGAGCACTGAGAATCTCCAGAGGTCCAGCCTCGCAA  199

seq1  CTCCTGAGATCTTAGTTCACAGCTGGTGGAAGAAGACCCCTCTAACAGTC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGATCTTAGTTCACAGCTGGTGGAAGAAGACCCCTCTAACAGTC  249

seq1  TCGAGGAGACAAGCCTGACATTGCCTCTCAATTCTCCCTCCCTACCAAAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGAGACAAGCCTGACATTGCCTCTCAATTCTCCCTCCCTACCAAAT  299

seq1  TGCAGGAGGGATCTGCTCTAATACAACCAAGAGAGTTCTGTCTGCACAGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGGGATCTGCTCTAATACAACCAAGAGAGTTCTGTCTGCACAGG  349

seq1  CAGGCCTGCTCTGAGTTCTCAGAGGTGCAAGGCCTGCAACCACAAGGAAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGCTCTGAGTTCTCAGAGGTGCAAGGCCTGCAACCACAAGGAAG  399

seq1  GACTGATCCAGCCACCCTCCATATTAGTGTTACACAGTTGTCTCATCCAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATCCAGCCACCCTCCATATTAGTGTTACACAGTTGTCTCATCCAC  449

seq1  CTGAACAGAAGTATAGGGGACAATACCCCTGCCTTAGCCCTAGGATCTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGAAGTATAGGGGACAATACCCCTGCCTTAGCCCTAGGATCTTT  499

seq1  ATGCACCTCCTGCACACCTGACCTATGGCCTGGGAATACATTTGAAGCCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTCCTGCACACCTGACCTATGGCCTGGGAATACATTTGAAGCCT  549

seq1  TGAGGGTTTCCCCTACAGCCAAACCTGTCCTTCTCACACAATACCGAGCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTTCCCCTACAGCCAAACCTGTCCTTCTCACACAATACCGAGCT  599

seq1  CAACACCATAAGAACTGCCAAACCCTGAATCAAGATGGACCTCCTTCAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCATAAGAACTGCCAAACCCTGAATCAAGATGGACCTCCTTCAGG  649

seq1  GACTTGAGTCTCCTAGGTTTTTGACCATGGGACACACACTGAATACATAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAGTCTCCTAGGTTTTTGACCATGGGACACACACTGAATACATAC  699

seq1  ACAGACACAAACAGAGAGGGAGAGAGAGAGAGAGGTAGAGAGAGATGGTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACAAACAGAGAGGGAGAGAGAGAGAGAGGTAGAGAGAGATGGTG  749

seq1  AGAGACAGAGAGAGACAGAAGACAGACAGAGACAAAGACAGAGACAGAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAGAGACAGAAGACAGACAGAGACAAAGACAGAGACAGAGA  799

seq1  GGCAGGGGGACAGATAGAAAGGACAGAGACAGACAGGCAGACAAAGAAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGGACAGATAGAAAGGACAGAGACAGACAGGCAGACAAAGAAAC  849

seq1  AAAATCGGGTCTCCCAGTCTTCTAAGATCCTAGACCACTGCATCTGTGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCGGGTCTCCCAGTCTTCTAAGATCCTAGACCACTGCATCTGTGAA  899

seq1  TTC  894
      |||
seq2  TTC  902

seq1: chrX_72860722_72861291
seq2: B6Ng01-005E13.g_71_640

seq1  GAATTCTTTGATAAGCATGAAGAAACTTCTTTTTTATATTATTATTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATAAGCATGAAGAAACTTCTTTTTTATATTATTATTCAAT  50

seq1  GTTTGTCACATAGTCTTATTTTACTTTTCTGTCTTGTCTCCTAGAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCACATAGTCTTATTTTACTTTTCTGTCTTGTCTCCTAGAAATTA  100

seq1  CTAGTATTAATTTCCAAAGTTTTGTCATTGTAAGAATGCTACAGAAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTAATTTCCAAAGTTTTGTCATTGTAAGAATGCTACAGAAGTTG  150

seq1  ATCTATATGGAATGTAACATTTTGGAATTGGTCTTTCATTAAGGAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATGGAATGTAACATTTTGGAATTGGTCTTTCATTAAGGAAAGTA  200

seq1  ACTTGAATGGTAGCAAATTTGTATTTTTGTTAGTAGTCCATTTTTATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATGGTAGCAAATTTGTATTTTTGTTAGTAGTCCATTTTTATTGC  250

seq1  TGAGTTGTATTCTGTAGTACAGATATAACAAGGCTGGTTCAATCACTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTATTCTGTAGTACAGATATAACAAGGCTGGTTCAATCACTCAC  300

seq1  ATTTTGAATGATATTTGAAAATTTACATTACTATTTAACTCGTGTACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAATGATATTTGAAAATTTACATTACTATTTAACTCGTGTACATG  350

seq1  TTTTTGTTTGAATATAAATCATTTATTTGGAATAAATATTCAGAAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGAATATAAATCATTTATTTGGAATAAATATTCAGAAATATA  400

seq1  GTGGCTGTTTTTAAAAAGAAATTGTGACACTATTTTCCAAAATGGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTTTTTAAAAAGAAATTGTGACACTATTTTCCAAAATGGTTTTA  450

seq1  ACATTTAGGATTTCTACCAGTAATGTATAAAATACTCAATTTTTATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGGATTTCTACCAGTAATGTATAAAATACTCAATTTTTATATAC  500

seq1  TGGCTGAATGAAAAAGAAAAATAGAAAAAAAAAAGGAAACATGACTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATGAAAAAGAAAAATAGAAAAAAAAAAGGAAACATGACTGTTC  550

seq1  CTAGGTATGGTGTGCAGGAG  570
      ||||||||||||||||||||
seq2  CTAGGTATGGTGTGCAGGAG  570