BAC Information

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BAC

Clone NameB6Ng01-005L10
ChromosomeX (Build37)
Map Location 147,393,036 - 147,543,831
singlet/doubletdoublet
Overlap geneGnl3l, Fgd1, Tsr2
Upstream geneLOC382244, LOC100039669, EG666982, EG624631, EG546387, LOC333588, Tmem29, LOC100040101, Alas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021
Downstream geneLOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760, Phf8, LOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L10.bB6Ng01-005L10.g
ACCDH842776DH842777
length7161,003
definitionDH842776|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L10, 5' end.DH842777|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,393,036 - 147,393,692)(147,543,297 - 147,543,831)
sequence
gaattcctcaaaattaatatgagaaaaactaggaatgcatagatgcctgg
agtaaaagactgagccaaaatgtaaactggaccacttaaagtctgcgagc
aaagctgaggtgggtttctttgagaaactggaatattcaagagaaaaaca
taaatggcagaattcagaaaatgtgctcagaaaagaactgggccatcacc
ttgagtgactcttaaggcaacactaccctaaaacagagcagcttttgcaa
aaataagataagttttctctattacttttggcattttttgtaaatttggt
tgttggttcgctggaggctttggggagggagtgtatgtgtgttttggctc
tttatgtttaggaaatctctataaaaacaccaactaagaaagagagactt
cagtgagtacacataaggaatacagtgttcacaaaattagtttggaaaag
tcacctaacaaacactaaggctttcaaaaacagcaaactcagagcgaagg
gaagaggaactataatttgcagcattaacatgttaagatattcaaatgta
ttttcctttgtctggtcttgaacttagatccttcagcctcaatccccatc
taaatgtaaggtttgccacaaaaattaaaaatcacaatgcgtgttaaaaa
aaaaaaaacacacagaaggggctggcaagagagctcaaagggttaagagc
actgaattctcttctg
gaattcatcacaacatgagaaactgtattaaggggtcacagcattaggaa
ggttaagggccattgttctatggcttctgcttcgggttatgccttcaggt
tcttgccttgagttcctgtcctgtcttcaagatggtctgtgacatggaac
tgtaaaccaaataaatcctttctttcctaagttgcttttggtcgtggcct
tcatcacaacaatagaaaaacaaatgtggactcggtgactttatagtttt
gagatctttggaactggtttgtgaatgaactatgaaagacttggggttgg
ggtctagaaaagccagaaagcactataaaagcagggtcaatgggacattc
ttggggacgtttgaaaacaggagtgctaagaaaaagacagtacaggccca
gctcacgatgtttcaaaaggaaataaaaaccctaccacggaccaaggtag
agagcatttgagttgtatttgagcaaagaatctggtttcctactccatgc
atcccaagaagtggagttaagttgagttcaaaagtaatagagtaatttgt
ctagtggaagagacctagataggagtgtttgagctgtgacattgtcactg
cttagccaacacttcagtcagagcgacgggtggagcaaaaagataggaaa
atgtgatgcttggtgaaaagagaacatttaaagctgcagacaagatgggt
cctgagaaagtaccttgtaactgctaaagaggttagcaaatggtcagccc
tgaaaatatacaagtaacattatatggactgaataggttttttaaatgta
tattacatacacacacacaaaaatctatgtatgcaataataattagtgaa
aaagaggccatgaatttgaagagtagggagggtcatatgggagaattggc
agaggaaagagaaagattaacgttgtaactatactaaaatctcaaaaaaa
aaatttaattttaaacaaaaaactgaagaaaagaatgagatttgtagaga
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_147393036_147393692
seq2: B6Ng01-005L10.b_106_763

seq1  ACTGAGCCAAAATGTAAACTGGACCACTTAAAGTCTGCGAGCAAAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCAAAATGTAAACTGGACCACTTAAAGTCTGCGAGCAAAGCTGA  50

seq1  GGTGGGTTTCTTTGAGAAACTGGAATATTCAAGAGAAAAACATAAATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTTCTTTGAGAAACTGGAATATTCAAGAGAAAAACATAAATGGC  100

seq1  AGAATTCAGAAAATGTGCTCAGAAAAGAACTGGGCCATCACCTTGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAGAAAATGTGCTCAGAAAAGAACTGGGCCATCACCTTGAGTGA  150

seq1  CTCTTAAGGCAACACTACCCTAAAACAGAGCAGCTTTTGCAAAAATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGGCAACACTACCCTAAAACAGAGCAGCTTTTGCAAAAATAAGA  200

seq1  TAAGTTTTCTCTATTACTTTTGGCATTTTTTGTAAATTTGGTTGTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTCTCTATTACTTTTGGCATTTTTTGTAAATTTGGTTGTTGGTT  250

seq1  CGCTGGAGGCTTTGGGGAGGGAGTGTATGTGTGTTTTGGCTCTTTATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGAGGCTTTGGGGAGGGAGTGTATGTGTGTTTTGGCTCTTTATGTT  300

seq1  TAGGAAATCTCTATAAAAACACCAACTAAGAAAGAGAGACTTCAGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATCTCTATAAAAACACCAACTAAGAAAGAGAGACTTCAGTGAGT  350

seq1  ACACATAAGGAATACAGTGTTCACAAAATTAGTTTGGAAAAGTCACCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAGGAATACAGTGTTCACAAAATTAGTTTGGAAAAGTCACCTAA  400

seq1  CAAACACTAAGGCTTTCAAAAACAGCAAACTCAGAGCGAAGGGAAGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTAAGGCTTTCAAAAACAGCAAACTCAGAGCGAAGGGAAGAGGA  450

seq1  ACTATAATTTGCAGCATTAACATGTTAAGATATTCAAATGTATTTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTTGCAGCATTAACATGTTAAGATATTCAAATGTATTTTCCTT  500

seq1  TGTCTGGTCTTGAACTTAGATCCTTCAGCCTCAATCCCCATCTAAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTCTTGAACTTAGATCCTTCAGCCTCAATCCCCATCTAAATGTA  550

seq1  AGGTTTGCCACAAAAATTAAAAATCACAATGCGTGTTAAAAAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGCCACAAAAATTAAAAATCACAATGCGTGTTAAAAAAAAAAAAA  600

seq1  CACACAGAAGGGGCTGGCAAGAGAGCTCAGAGGG-TAAGAGCACTGAGTG  649
      ||||||||||||||||||||||||||||| |||| |||||||||||| | 
seq2  CACACAGAAGGGGCTGGCAAGAGAGCTCAAAGGGTTAAGAGCACTGAATT  650

seq1  CTCTTCTG  657
      ||||||||
seq2  CTCTTCTG  658

seq1: chrX_147543297_147543831
seq2: B6Ng01-005L10.g_545_1072 (reverse)

seq1  CTCTCTCTCAAATTCTCATTCTTTTTCTTCAGTTTTTTTGTTTTAAATTT  50
      ||||||||  || |||||||| ||||||||||||||||   |||||| ||
seq2  CTCTCTCTACAAATCTCATTC-TTTTCTTCAGTTTTTT--GTTTAAAATT  47

seq1  AAATTTTTTTTTTGAGATTTTAGTATAGTTACAACGTTTATTCTTTCTCT  100
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  AAATTTTTTTTTTGAGATTTTAGTATAGTTACAACG-TTAATCTTTCTCT  96

seq1  TTCCTCCTGCCAAATTCTCCCATATGACCCTCCCTACTCTTCAAATTCAT  150
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCCT-CTGCC-AATTCTCCCATATGACCCTCCCTACTCTTCAAATTCAT  144

seq1  GGCCTCTTTTTTCACTAATTATTATTGCATACATAGATTTTTGTGTGTGT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTC-TTTTTCACTAATTATTATTGCATACATAGATTTTTGTGTGTGT  193

seq1  GTATGTAATATACATTTAAAAAACCTATTCAGTCCATATAATGTTACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAATATACATTTAAAAAACCTATTCAGTCCATATAATGTTACTTG  243

seq1  TATATTTTCAGGGCTGACCATTTGCTAACCTCTTTAGCAGTTACAAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCAGGGCTGACCATTTGCTAACCTCTTTAGCAGTTACAAGGTA  293

seq1  CTTTCTCAGGACCCATCTTGTCTGCAGCTTTAAATGTTCTCTTTTCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGGACCCATCTTGTCTGCAGCTTTAAATGTTCTCTTTTCACCA  343

seq1  AGCATCACATTTTCCTATCTTTTTGCTCCACCCGTCGCTCTGACTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACATTTTCCTATCTTTTTGCTCCACCCGTCGCTCTGACTGAAGT  393

seq1  GTTGGCTAAGCAGTGACAATGTCACAGCTCAAACACTCCTATCTAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTAAGCAGTGACAATGTCACAGCTCAAACACTCCTATCTAGGTCT  443

seq1  CTTCCACTAGACAAATTACTCTATTACTTTTGAACTCAACTTAACTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTAGACAAATTACTCTATTACTTTTGAACTCAACTTAACTCCAC  493

seq1  TTCTTGGGATGCATGGAGTAGGAAACCAGATTCTT  535
      |||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGATGCATGGAGTAGGAAACCAGATTCTT  528