BAC Information

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BAC

Clone NameB6Ng01-006H19
ChromosomeX (Build37)12 (Build37)
Map Location 136,240,826 - 136,241,05788,273,831 - 88,274,965
singlet/doubletsingletsinglet
Overlap geneTbc1d8b
Upstream geneIl1rapl2, Nrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432
Downstream geneRipply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006H19.bB6Ng01-006H19.g
ACCDH843333DH843334
length9921,113
definitionDH843333|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H19, 5' end.DH843334|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(136,240,826 - 136,241,057)(88,273,831 - 88,274,965)
sequence
gaattcactttgtagaccaggctggcctcgaactcagaaatccgcatgcc
tctgcctcccaagtgctgggatcaaaggcgtgtgccaccacgcccggctg
ttttgtttttttaatgttgaagcactcttgcaaacccgagaaaggtttcc
tttgatatgtgtataattctttttgtaaagctgtatttgaattgctacat
tttactgatgtttttgtctatgattttaagttttattaatatctttgtgc
ttagtatcaataaaatggtagtcatagaataaggacgttttcttatgctt
ctatattctggaatagataatgaagaaattgcctatttcttcctttagtg
tttgatgagtttgctagtgaatccatctggtcctggtgtttctcttttgg
aaggaaattgattattgctttgaaatatctagcagatataggactttcca
gatggtctatttcttctggtgagaacgttggcaagttgtgtctatggtgg
cattggcttgttccatggaggctctcaggttggtgggcataaagttgtct
gtaatatccataatcgcttactatcttctcactctctgaagaatgtgcaa
cgtagactccaggtagatattttatcttttaattttgttttctctccttc
cctccctcagccagattcttgtcaatttaagatatagatataatagatag
atagagttggggtaaaacacatataatatagaatttactatcttagtaat
ttttatttatttatttatgtgttgcatagtggtgttgggaaatgaaccca
ggacctctgagaagccaggcaaatgttctaccactactagtctgtgttcc
tgtagttccagtctttttttttttaataaccaacttgtatttttgacact
gtactctgatgtgacttggtttggaccttagacatttgtaccacaccctt
cttagcctctttattttgtatttcatgggtatgaatgtttgc
gaattccaggttagcctgagttacatgagcccctgtctctcaaagacaac
caaaccaaccaagtaagcaaacaaagaagagaccgggctggggagagaac
tcaatgttgtcttgcacagcacctgaacccagtgggaaaaaccaaagctg
ggtgtgtgctcagggatgcagagcgagagaccggggatccctagggtcca
cttgtcagtcagctccaggtcccagtggaagactttgtctcaaaaaacaa
ggtagatggctcctgaggagagatatggtaggttgtcctctggtctatgc
atttgagtacacacacagacacacagacattctctctgtctgtctgtctc
agatacttttatgcgcatgattgttttgcctgggtgtgtatctgaggagc
tcctaggacccctgcctcccagtgcagacagcagggactctgaatctccc
ccttgtttcagcagagtatcagttaatcatatggacaaggacagaaagac
atacatacaggagctaagcacactcactctgcatagcctggcagagaggg
ctcctaccacccctcggacctgcctcctgaaggttttaggtacttaaaat
ctttgccatcagagcacttttttttttttttttttagttttcttgggtcc
tagcatgaagaagagttccccacccccaagccccaggaaatggacttcag
gttagcttctgcaaacagcttaacaactacttaattgtgaacaagtggct
gtcagttgacttggcctgaggagcccaggagaggagcagcttggcttttc
cagggcccttatttgtcttctggagcatggtagtctgaggaacatctcag
agtagagaagttatgtggaaccagcaaggcattagcctggaagctggtgc
ttcttcccaaagtcatatccacattatgactaacccagcagctacccata
gttcccaagaggcagtcctttgaaaagtgataaggcattggggttctgac
cagattgctttagccttaagcccgaggctgttgctcgtctgcattggaag
actacgaagtacatatgtgagaatgaacttggcaacaaagctgctgaatg
cttgattcgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_136240826_136241057
seq2: B6Ng01-006H19.b_52_212 (reverse)

seq1  AATTATACACATATCAAAAAGGTTTCAACCACAGGAAGAACCCCTTTAAG  50
      |||||||||||||||||               |||||     |||||   
seq2  AATTATACACATATCAA---------------AGGAA----ACCTTT---  28

seq1  GCTCTTTATGTAGCACAGGGAACAATTACAATGGTATAGAGAAATCTTCG  100
       |||             |||     || ||         |||   |||| 
seq2  -CTC-------------GGG----TTTGCA---------AGAGTGCTTCA  51

seq1  ACATTATGAATTGCAGGTGAATTTTAAAAGATAAGCATGTAGCTGGGCGT  150
      ||||||             ||    |||| | ||      ||| ||||||
seq2  ACATTA-------------AA----AAAACAAAA-----CAGCCGGGCGT  79

seq1  GGTGGCGCACGCCTTTGATCCCAGCACTGGGGAGGCAGAGGCAGGCAGAT  200
      |||||| ||||||||||||||||||||| |||||||||||||| || |||
seq2  GGTGGCACACGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCATGCGGAT  129

seq1  TTCTGAGTTGGAGGTCAGTCTGGTCTACAAAG  232
      ||||||||| |||| ||| |||||||||||||
seq2  TTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG  161

seq1: chr12_88273831_88274965
seq2: B6Ng01-006H19.g_65_1177

seq1  GAATTCCAGGTTAGCCTGAGTTACATGAGCCCCTGTCTCTCAAAGACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTAGCCTGAGTTACATGAGCCCCTGTCTCTCAAAGACAAC  50

seq1  CAAACCAACCAAGTAAGCAAACAAAGAAGAGACCGGGCTGGGGAGAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAACCAAGTAAGCAAACAAAGAAGAGACCGGGCTGGGGAGAGAAC  100

seq1  TCAATGTTGTCTTGCACAGCACCTGAACCCAGTGGGAAAAACCAAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTGTCTTGCACAGCACCTGAACCCAGTGGGAAAAACCAAAGCTG  150

seq1  GGTGTGTGCTCAGGGATGCAGAGCGAGAGACCGGGGATCCCTAGGGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCTCAGGGATGCAGAGCGAGAGACCGGGGATCCCTAGGGTCCA  200

seq1  CTTGTCAGTCAGCTCCAGGTCCCAGTGGAAGACTTTGTCTCAAAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGTCAGCTCCAGGTCCCAGTGGAAGACTTTGTCTCAAAAAACAA  250

seq1  GGTAGATGGCTCCTGAGGAGAGATATGGTAGGTTGTCCTCTGGTCTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGGCTCCTGAGGAGAGATATGGTAGGTTGTCCTCTGGTCTATGC  300

seq1  ATTTGAGTACACACACAGACACACAGACATTCTCTCTGTCTGTCTGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTACACACACAGACACACAGACATTCTCTCTGTCTGTCTGTCTC  350

seq1  AGATACTTTTATGCGCATGATTGTTTTGCCTGGGTGTGTATCTGAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTTTATGCGCATGATTGTTTTGCCTGGGTGTGTATCTGAGGAGC  400

seq1  TCCTAGGACCCCTGCCTCCCAGTGCAGACAGCAGGGACTCTGAATCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGACCCCTGCCTCCCAGTGCAGACAGCAGGGACTCTGAATCTCCC  450

seq1  CCTTGTTTCAGCAGAGTATCAGTTAATCATATGGACAAGGACAGAAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTCAGCAGAGTATCAGTTAATCATATGGACAAGGACAGAAAGAC  500

seq1  ATACATACAGGAGCTAAGCACACTCACTCTGCATAGCCTGGCAGAGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACAGGAGCTAAGCACACTCACTCTGCATAGCCTGGCAGAGAGGG  550

seq1  CTCCTACCACCCCTCGGACCTGCCTCCTGAAGGTTTTAGGTACTTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCACCCCTCGGACCTGCCTCCTGAAGGTTTTAGGTACTTAAAAT  600

seq1  CTTTGCCATCAGAGCACTTTTTTTTTTTTTTTTTTAGTTTTCTTGGGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCATCAGAGCACTTTTTTTTTTTTTTTTTTAGTTTTCTTGGGTCC  650

seq1  TAGCATGAAGAAGAGTTCCCCACCCCCAAGCCCCAGGAAATGGACTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGAAGAAGAGTTCCCCACCCCCAAGCCCCAGGAAATGGACTTCAG  700

seq1  GTTAGCTTCTGCAAACAGCTTAACAACTACTTAATTGTGAACAAGTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTCTGCAAACAGCTTAACAACTACTTAATTGTGAACAAGTGGCT  750

seq1  GTCAGTTGACTTGGCCTGAGGAGCCCAGGAGAGGAGCAGCTTGGCTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGACTTGGCCTGAGGAGCCCAGGAGAGGAGCAGCTTGGCTTTTC  800

seq1  CAGGGCCCTTATTTGTCTTCTGGAGCATGGTAGTCTGAGGAACATCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGGGCCCTTATTTGTCTTCTGGAGCATGGTAGTCTGAGGAACATCTCA-  849

seq1  GAGTAGAGAAGTTATGTGGAACCAGCAAGGCATTAGCCTGGAAGCTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGAAGTTATGTGGAACCAGCAAGGCATTAGCCTGGAAGCTGGTG  899

seq1  CTTC-TCCCAAAGTCATATCCACA-TATGACTAACCCAGCAGCTAACCCA  948
      |||| ||||||||||||||||||| ||||||||||||||||||| |||||
seq2  CTTCTTCCCAAAGTCATATCCACATTATGACTAACCCAGCAGCT-ACCCA  948

seq1  TAG-TCCCAAGAGGCAGGTCCTTTGAAAAGTGATTAGGGCATTGGGGTTC  997
      ||| |||||||||||| |||||||||||||||| || |||||||||||||
seq2  TAGTTCCCAAGAGGCA-GTCCTTTGAAAAGTGA-TAAGGCATTGGGGTTC  996

seq1  TGACCCAAGGAATGGCTTTAGGCCCTTAAGCCCGAGGCTTGTTGGCCTCG  1047
      |||||  ||  || |||||||  ||||||||||||||| |||||  ||||
seq2  TGACC--AG--ATTGCTTTAG--CCTTAAGCCCGAGGC-TGTTG--CTCG  1037

seq1  TCTGCATTTGAAGACCTACAGAAGGTACCATATGTGAGAAATGAAACCTT  1097
      |||||||| ||||| |||| ||| ||| |||||||||| ||||||  |||
seq2  TCTGCATTGGAAGA-CTAC-GAA-GTA-CATATGTGAG-AATGAA--CTT  1080

seq1  GGCATACAAAAGTCTGCTGATGCCTTGATTCTGGACTT  1135
      |||| |||||   |||||||   ||||||||  |||||
seq2  GGCA-ACAAA--GCTGCTGAATGCTTGATTC--GACTT  1113