BAC Information

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BAC

Clone NameB6Ng01-009F13
ChromosomeX (Build37)
Map Location 105,480,487 - 105,620,990
singlet/doubletdoublet
Overlap geneGm378
Upstream geneGpr174, LOC622613, LOC385404, Itm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
Downstream geneLOC668516, Gm379, Brwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009F13.bB6Ng01-009F13.g
ACCDH845312DH845313
length9261,119
definitionDH845312|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F13, 5' end.DH845313|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,620,351 - 105,620,990)(105,480,487 - 105,481,616)
sequence
gaattcatattatgtaccagctacagatctgggtgctaggttctgtgatc
ccttggaatgcttaactatggttctttgtttaggtccatacaatattaat
actgacaaatatcttagtgtttctctagatcaagtttgccaggattatac
caagaaaataaaatagtggctaaagagatgataatagcatcttcccaagt
tctcccagataatagatgttgaaattatgactggactctatcctaggttt
ctcctaccaggttcctgtatttcccattatactagatcatagtactttat
tttactgagcatatataagtatatatctttaaaacaatgatattcaaagc
taaacttaacaaaaattaatgggaaaaaagggaccatgatttgaaaaaga
gcaaggggagaaatggggagattggagaaaggaaatgaaagagggaaata
tcacaatctcaaatataaaataaataatttataaaatgattatgcaggtc
ttgtttagatagccatatttttgagatgtcatgggtacagttttcctgcc
atgccaaagacaccatcttcacacatacatattgattttatgtcccataa
tctttctgcaccttttctgaaatattccctgagccttacatataggggga
ttcagatgtatccaatggagatggacaccacatagtcagttttctgagca
ttataactagttgtggctttctgtctggtctctgctgcaaaaatgaatcc
tttttggtgaaggttgagagctacacttagctgtgattataaggtaagta
tttaaaatgaaagtagaaactatattggtttagggaagttgccagtagaa
gatttaactctaggttctatggcttctcaatctgatgtaacagtgcatgg
tatggattatctctcattaagtgggt
gaattctatgcataataaaatttagaagatagatgagcagtcaagagatg
gaagacagaaacaagaagaatgtttagaccacaatctttattggatttca
ttatgggaaggaaggcgggacactgaaagctcttcagtgttgactagttt
gaataattttttaggagtttgagctatagtgttatcctatagtgaccttt
caactggccttaagataattaacagataaaagtagtgtttacagtttgca
tgggccagatacatgagatatgattctatgcttgttagtttgcatgaaag
acatgaattgttttcatctttaaacttagtatttatgtacctaaaaatgg
gtagtcattttgtttttgagatgaccaaatgcaaatatacagaaaaacat
ttaaatatttaagatacagtatattaatatggtaacattgggaatggaga
aaataaaacaaaacttgtctatataaaggttaaaattaaataaagtaaca
aaaccaaaacaacaaaaatcaatgaaaatattacataggcacacagaagt
gattatcagaatgatgaattgaaaaagacaaatgagatgcctcaggggaa
aaggaaatttagaagctagagacttactgttttattatcatatttgtaga
atcatttgtcctaatatgtttctataacaaagaaataaaactaagttttc
tgaaacaaagtcttataacagtaaataaatattaatgaagaaagaacgat
aacttgtctcatcatgtcctgaatatttttctaaagtgtagtatttcaaa
aacatattagtaatgaatcaaacataattaaagtagaaaactgagtcttg
tacagaagggaacatataggagaggatttataggagatataggagaggaa
aaaaaatcaatttttcacctatccatcttagacttatggtctggggtcat
gtaaaaacaaataacaagtaaatgaagccttttttttttttaacatggaa
atttgcatacccatgggagcatagtttgagaatggagtactctcaattga
ggttagggaaacgggagctgggtgatttaaggcaatcgaactcctttgct
tttctgattctgaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_105620351_105620990
seq2: B6Ng01-009F13.b_44_683 (reverse)

seq1  TGTAAGGCTCAGGGAATATTTCAGAAAAGGTGCAGAAAGATTATGGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCTCAGGGAATATTTCAGAAAAGGTGCAGAAAGATTATGGGACA  50

seq1  TAAAATCAATATGTATGTGTGAAGATGGTGTCTTTGGCATGGCAGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAATATGTATGTGTGAAGATGGTGTCTTTGGCATGGCAGGAAAA  100

seq1  CTGTACCCATGACATCTCAAAAATATGGCTATCTAAACAAGACCTGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCCATGACATCTCAAAAATATGGCTATCTAAACAAGACCTGCATA  150

seq1  ATCATTTTATAAATTATTTATTTTATATTTGAGATTGTGATATTTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTATAAATTATTTATTTTATATTTGAGATTGTGATATTTCCCTC  200

seq1  TTTCATTTCCTTTCTCCAATCTCCCCATTTCTCCCCTTGCTCTTTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCCTTTCTCCAATCTCCCCATTTCTCCCCTTGCTCTTTTTCAA  250

seq1  ATCATGGTCCCTTTTTTCCCATTAATTTTTGTTAAGTTTAGCTTTGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTCCCTTTTTTCCCATTAATTTTTGTTAAGTTTAGCTTTGAATA  300

seq1  TCATTGTTTTAAAGATATATACTTATATATGCTCAGTAAAATAAAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTTAAAGATATATACTTATATATGCTCAGTAAAATAAAGTACT  350

seq1  ATGATCTAGTATAATGGGAAATACAGGAACCTGGTAGGAGAAACCTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTAGTATAATGGGAAATACAGGAACCTGGTAGGAGAAACCTAGGA  400

seq1  TAGAGTCCAGTCATAATTTCAACATCTATTATCTGGGAGAACTTGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCAGTCATAATTTCAACATCTATTATCTGGGAGAACTTGGGAAG  450

seq1  ATGCTATTATCATCTCTTTAGCCACTATTTTATTTTCTTGGTATAATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTATCATCTCTTTAGCCACTATTTTATTTTCTTGGTATAATCCT  500

seq1  GGCAAACTTGATCTAGAGAAACACTAAGATATTTGTCAGTATTAATATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACTTGATCTAGAGAAACACTAAGATATTTGTCAGTATTAATATTG  550

seq1  TATGGACCTAAACAAAGAACCATAGTTAAGCATTCCAAGGGATCACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACCTAAACAAAGAACCATAGTTAAGCATTCCAAGGGATCACAGAA  600

seq1  CCTAGCACCCAGATCTGTAGCTGGTACATAATATGAATTC  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACCCAGATCTGTAGCTGGTACATAATATGAATTC  640

seq1: chrX_105480487_105481616
seq2: B6Ng01-009F13.g_67_1185

seq1  GAATTCTATGCATAATAAAATTTAGAAGATAGATGAGCAGTCAAGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCATAATAAAATTTAGAAGATAGATGAGCAGTCAAGAGATG  50

seq1  GAAGACAGAAACAAGAAGAATGTTTAGACCACAATCTTTATTGGATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAAACAAGAAGAATGTTTAGACCACAATCTTTATTGGATTTCA  100

seq1  TTATGGGAAGGAAGGCGGGACACTGAAAGCTCTTCAGTGTTGACTAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGAAGGAAGGCGGGACACTGAAAGCTCTTCAGTGTTGACTAGTTT  150

seq1  GAATAATTTTTTAGGAGTTTGAGCTATAGTGTTATCCTATAGTGACCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTTTTAGGAGTTTGAGCTATAGTGTTATCCTATAGTGACCTTT  200

seq1  CAACTGGCCTTAAGATAATTAACAGATAAAAGTAGTGTTTACAGTTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCCTTAAGATAATTAACAGATAAAAGTAGTGTTTACAGTTTGCA  250

seq1  TGGGCCAGATACATGAGATATGATTCTATGCTTGTTAGTTTGCATGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGATACATGAGATATGATTCTATGCTTGTTAGTTTGCATGAAAG  300

seq1  ACATGAATTGTTTTCATCTTTAAACTTAGTATTTATGTACCTAAAAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATTGTTTTCATCTTTAAACTTAGTATTTATGTACCTAAAAATGG  350

seq1  GTAGTCATTTTGTTTTTGAGATGACCAAATGCAAATATACAGAAAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCATTTTGTTTTTGAGATGACCAAATGCAAATATACAGAAAAACAT  400

seq1  TTAAATATTTAAGATACAGTATATTAATATGGTAACATTGGGAATGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTTAAGATACAGTATATTAATATGGTAACATTGGGAATGGAGA  450

seq1  AAATAAAACAAAACTTGTCTATATAAAGGTTAAAATTAAATAAAGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAAACTTGTCTATATAAAGGTTAAAATTAAATAAAGTAACA  500

seq1  AAACCAAAACAACAAAAATCAATGAAAATATTACATAGGCACACAGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAACAACAAAAATCAATGAAAATATTACATAGGCACACAGAAGT  550

seq1  GATTATCAGAATGATGAATTGAAAAAGACAAATGAGATGCCTCAGGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCAGAATGATGAATTGAAAAAGACAAATGAGATGCCTCAGGGGAA  600

seq1  AAGGAAATTTAGAAGCTAGAGACTTACTGTTTTATTATCATATTTGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATTTAGAAGCTAGAGACTTACTGTTTTATTATCATATTTGTAGA  650

seq1  ATCATTTGTCCTAATATGTTTCTATAACAAAGAAATAAAACTAAGTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGTCCTAATATGTTTCTATAACAAAGAAATAAAACTAAGTTTTC  700

seq1  TGAAACAAAGTCTTATAACAGTAAATAAATATTAATGAAGAAAGAACGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAAGTCTTATAACAGTAAATAAATATTAATGAAGAAAGAACGAT  750

seq1  AACTTGTCTCATCATGTCCTGAATATTTTCTAAAAGTGTAGTATTTCAAA  800
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  AACTTGTCTCATCATGTCCTGAATATTTTTCTAAAGTGTAGTATTTCAAA  800

seq1  AACATATTAGTAATGAATCAAACATAATTAAAGTAGAAAACTGAGTCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTAGTAATGAATCAAACATAATTAAAGTAGAAAACTGAGTCTTG  850

seq1  TACAGAAGGGAACATATAGGAGAGGATTTATAGGAGATATAGGAGAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGGGAACATATAGGAGAGGATTTATAGGAGATATAGGAGAGGAA  900

seq1  AAAAAAACAAATTTTCACCTATCCATCTTAGACTTATGGTCTGTGGCCCA  950
      |||||| ||| |||||||||||||||||||||||||||||||| ||  ||
seq2  AAAAAATCAATTTTTCACCTATCCATCTTAGACTTATGGTCTG-GGGTCA  949

seq1  TGTAAAAACAGATTAACAAAAGTAAATGAAGCCTTTTTTTTTTTTAACAT  1000
      |||||||||| | ||||  |||||||||||||||||||||||||||||||
seq2  TGTAAAAACA-AATAAC--AAGTAAATGAAGCCTTTTTTTTTTTTAACAT  996

seq1  GGAAATTTTGCATACACATGGGAG-ATAGTTTGAGAAT-GAGTAACTCTC  1048
      ||||| ||||||||| |||||||| ||||||||||||| |||| ||||||
seq2  GGAAA-TTTGCATACCCATGGGAGCATAGTTTGAGAATGGAGT-ACTCTC  1044

seq1  CAAATTGAGGTTTAGGGAAAAGGGAAGCTGGTGGATTAAAGGCAATCAGA  1098
        |||||||| ||||||||| ||| ||||||  |||| ||||||||| ||
seq2  --AATTGAGG-TTAGGGAAACGGG-AGCTGGGTGATTTAAGGCAATC-GA  1089

seq1  ACTCCTTTGCATTTTCATGAATCTGAAACAAA  1130
      |||||||||| ||||| ||| |||||||||||
seq2  ACTCCTTTGC-TTTTC-TGATTCTGAAACAAA  1119