BAC Information

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BAC

Clone NameB6Ng01-009J20
ChromosomeX (Build37)
Map Location 31,945,477 - 31,946,495
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040533, LOC100039328, LOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429, LOC100040698, LOC630028, LOC100040722, LOC100040732
Downstream geneLOC100040743, LOC385298, LOC100039460, LOC100040781, LOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009J20.bB6Ng01-009J20.g
ACCDH845509DH845510
length1,238995
definitionDH845509|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J20, 5' end.DH845510|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttatctctgtaccccatttttaatgggattatttgattt
tctggagtccagattcttgagttttttgtatatattggatattagtcacc
tatcagatttaggattggtaaagaccctttcccaatctgttggtgggttt
tttgtcttactaacagtgtctttttcttacagaagtttgcaattttatga
ggtcccacttgtcaattattgatcttacagaaaaaaagcatggctgttct
gttcaggaattttttcctccgttcccatccatatctttaaagattttccc
cactttctcctctataagtttcagagtctctgcttttatggggaagtcct
tgatccacttagatttgaggtttgtacaaggagataaaaatgggtcaatt
ctcattcttctacatgataacctatagatgttccaacaccatttgttgaa
aatgctgactttttcccactggatggtcttagctcccttgtcaatactca
agtgtgtggattcatttctgggtcttctactctattccattgatctaccc
ggattttgctgtaccagtaccatgtagtttttatcacaattgctctgtaa
tacagcttgaggtcaggcatagtgattccaacagaggttctttaattgtt
gagaatactttttgttatcctagtttttttgttgttgttgttattccaga
tgaatttgcaaattgccctttctaacttagtgaagaactgagttggaatt
ttgatggggattgcattgaatcattagattgccttcagcaagatagtcat
ttttactatattaatcctgccaatccatgagtatgggcgatcattacatc
ttctgagatcttctttgattctttcttcagagacctgaagatcttatcat
agagatcttttacttccttagttagagtcacactacggtatttgatatta
tttgtgactattatgaaaggtattgtttccctaatttctttttcaagctg
ttatccattatgtagagaaagaccactgattttttgagtaattttatatc
cagctactaaactgaacttttatcagtttggagttctttggtgggattta
ggccacttagttattaccattcattacaaaagggaattttgctcctccat
tcaaattggatccttatcctttgtgtcatgctggcaggatcaggactatt
ggtagtggaaaaaatgtgcgcccgtgtcgtcactctag
gaattctttcttatttcaaccctgaccaagtatcattcagcagaaagttt
tttagttttcatgagtatgtggacattctgttgttttggttgttattaac
atctagccttatcctgatgttatctgatagaatgcatgtgagtattccca
ttttcttgtatctgttgatgcttttgttttatgaccaaatatattatcag
ttttggggaatgttccatgaggaactcagaagaatatatattctcttgtt
ttggcatgaaatgttctattgatatctattaaatccatttgggtcaagac
ttctgttagttttactgtgtctctgttattttctttttctttttcttttt
tttttttttttttttttgttagggatgacctgtttctgcaccttagtggt
ctcggctagaagacttgaagacaggccagcccacagatataggcatttct
aattttatgtacttgcaacttgatcatacagcatgcaagaatgtgttaga
gccaatgagatttcaaaaaaataattgaaaacataaacaaaggcaattaa
gtacacaactgtgttcaaaatttattattgacgggtacttgagatcagga
gttacaaattcatttgatgaacttttaccttgggttttttttatactact
caaatcaggcctatcaatttgtattcaagtgatgttgttttgcatgtgtg
ttgacactcagcattcccctctacagagacacagtggctgccttactcca
gaaggatctgtgtctaatttagttcatctttctttctttcttttttttcc
attttttattaggtatttagctcatttacatttccaatgccataccaaaa
gtccccatacccaccaaccccactcccctaccaaccactccccttttgcc
ctggcatccctttactgggcaaatagttgcagtcatgggctctcatgcat
gatgccgactaggctatctttgatcaatgcagctagaacaaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_31945477_31946495
seq2: B6Ng01-009J20.g_68_1062 (reverse)

seq1  AGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCAT  50
      |||| |||| ||||||||||| || ||| |||||| |||||||||| |||
seq2  AGCT-TTGT-TCTAGCTGCAT-TG-ATC-AAAGATAGCCTAGTCGG-CAT  44

seq1  CACTGCAATGAGAGGCCCATTTGACTTGCAAACTTTATATGCCCCAGTAC  100
      || ||| |||||| |||||  |||| |||||    ||| || ||||||| 
seq2  CA-TGC-ATGAGA-GCCCA--TGAC-TGCAA---CTATTTG-CCCAGTAA  84

seq1  AGGGGAATGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGG  150
      ||||  ||||||||||   ||| ||||||| ||| ||||||||||| |||
seq2  AGGG--ATGCCAGGGC---AAAAGGGGAGT-GGTTGGTAGGGGAGT-GGG  127

seq1  GTGGGTGGGTATGGGGGACTTTTGGTATGGCATTGGAAATGTAAATGAGC  200
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGGTAT-GGGGACTTTTGGTATGGCATTGGAAATGTAAATGAGC  176

seq1  TAAATACCTAATAAAAAATGGAAAAAAAAGAAAGAAAGAAAGATGAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCTAATAAAAAATGGAAAAAAAAGAAAGAAAGAAAGATGAACTA  226

seq1  AATTAGACACAGATCCTTCTGGAGTAAGGCAGCCACTGTGTCTCTGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGACACAGATCCTTCTGGAGTAAGGCAGCCACTGTGTCTCTGTAGA  276

seq1  GGGGAATGCTGAGTGTCAACACACATGCAAAACAACATCACTTGAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGCTGAGTGTCAACACACATGCAAAACAACATCACTTGAATACA  326

seq1  AATTGATAGGCCTGATTTGAGTAGTATAAAAAAAACCCAAGGTAAAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATAGGCCTGATTTGAGTAGTATAAAAAAAACCCAAGGTAAAAGTT  376

seq1  CATCAAATGAATTTGTAACTCCTGATCTCAAGTACCCGTCAATAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGAATTTGTAACTCCTGATCTCAAGTACCCGTCAATAATAAAT  426

seq1  TTTGAACACAGTTGTGTACTTAATTGCCTTTGTTTATGTTTTCAATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACACAGTTGTGTACTTAATTGCCTTTGTTTATGTTTTCAATTATT  476

seq1  TTTTTGAAATCTCATTGGCTCTAACACATTCTTGCATGCTGTATGATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAATCTCATTGGCTCTAACACATTCTTGCATGCTGTATGATCAA  526

seq1  GTTGCAAGTACATAAAATTAGAAATGCCTATATCTGTGGGCTGGCCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAGTACATAAAATTAGAAATGCCTATATCTGTGGGCTGGCCTGTC  576

seq1  TTCAAGTCTTCTAGCCGAGACCACTAAGGTGCAGAAACAGGTCATCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCTTCTAGCCGAGACCACTAAGGTGCAGAAACAGGTCATCCCTA  626

seq1  ACAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAATAACAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAATAACAGAGA  676

seq1  CACAGTAAAACTAACAGAAGTCTTGACCCAAATGGATTTAATAGATATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAAACTAACAGAAGTCTTGACCCAAATGGATTTAATAGATATCA  726

seq1  ATAGAACATTTCATGCCAAAACAAGAGAATATATATTCTTCTGAGTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACATTTCATGCCAAAACAAGAGAATATATATTCTTCTGAGTTCCT  776

seq1  CATGGAACATTCCCCAAAACTGATAATATATTTGGTCATAAAACAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACATTCCCCAAAACTGATAATATATTTGGTCATAAAACAAAAGC  826

seq1  ATCAACAGATACAAGAAAATGGGAATACTCACATGCATTCTATCAGATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGATACAAGAAAATGGGAATACTCACATGCATTCTATCAGATAA  876

seq1  CATCAGGATAAGGCTAGATGTTAATAACAACCAAAACAACAGAATGTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGATAAGGCTAGATGTTAATAACAACCAAAACAACAGAATGTCCA  926

seq1  CATACTCATGAAAACTAAAAAACTTTCTGCTGAATGATACTTGGTCAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCATGAAAACTAAAAAACTTTCTGCTGAATGATACTTGGTCAGGG  976

seq1  TTGAAATAAGAAAGAATTC  1019
      |||||||||||||||||||
seq2  TTGAAATAAGAAAGAATTC  995