BAC Information

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BAC

Clone NameB6Ng01-011H14
ChromosomeX (Build37)
Map Location 108,668,146 - 108,781,711
singlet/doubletdoublet
Overlap geneEG664791, D030011N01Rik
Upstream geneLOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872, Rps6ka6
Downstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011H14.bB6Ng01-011H14.g
ACCDH846847DH846848
length1,0951,081
definitionDH846847|Mus musculus domesticus DNA, BAC clone: B6Ng01-011H14, 5' end.DH846848|Mus musculus domesticus DNA, BAC clone: B6Ng01-011H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,668,146 - 108,669,192)(108,780,624 - 108,781,711)
sequence
gaattcaggacctctggaagagcagtcagtgctcttaacctctgagccat
ctctccagccccgcaaaattcttttcttttttttttttaagataaattct
ttttctaattagatattttctttatttacatttcaaacgttatccccttt
cctagtttcccctctgaaaatctgaaaatcccctttcccctccccctccc
cctgctcaccaacctgcccactcctgcttccctgtcctggcattccctta
ccctgggggatagagccttcacaggaccaagggcctctcctcccattgct
gaacaactaggtcatcctctgctacatatgcaactagagccatgagtccc
ttcatgtgttttctttgattggtagtttagtctcagggagctctgggggt
actggttagttcatattgttccaaaattaatttcattgctacttcatagc
tgtaattttgctagtgtcgactccataatgtggttattttttctaaaata
gaggtttgccaaagggggcgctacccacagtttgggatccactgatctgt
gggatgaggctatggatcagaattaattttggatctttagcacctacata
aaaagccaataaaccagatgcagcaagtgcctgtgatctcagctccaagg
aggcagagataggtgaagctctggagctcattagcctagtggaattgata
agctccttgttcaatggaaacttctagctcaaaaaatagggatagtggtt
aacctgaaattgtcttctgacctccacctgttatacacattcgtgtgcat
gagcacgtgcgcgcgcgcacacacacacaaatacatgtatatatggcata
catacatacacaagaataaaatataattagagaaagaatctccacacact
aatttttactaatggttatttctttatttgctttttttgtggggggaggt
ctgtttcattgagaacagtctcattttttcctcattctggcctctaacta
gcatcaatccttcgccttttgttggaaatacagctttgactatgctgact
tatcagtgacattttcgtgtgtaattttctcatcaatagtaacag
gaattcttcagaactgaaatacgaacgttactgctaatattaggtgaatt
gtttttcttctaagattataatgctcccacaaaatttaccccaagtattt
tatttcaatcatctgtgaaacatttttactgtctgtactgatagttttaa
ttttaaatcaccagctcgaagtagcaaggcatagttatatacacctgtga
cattaacatatggaagatggaaacagtttatttagaaatttgtgctcatc
ctgtgccttataataaactcatgaacagtctggttatatgatactctgac
ttaaaagaaatataaatcatacatctaagctaataaacaataatagtact
ctagtatgtaatttaaaagtatctcagatgcataagtgcaattaatatat
tgattcttttaataattgggctagaaatatagttcagctgatagactact
tgcctagcatgtaatgagccctgggttctctcttcatcaccacataagtt
gggtgatgtggtaaacccctgtaaaaagataaagccggggggatcataat
ttcaatactgtccttggctaactaggctagcatgtgctagacacctttta
taaaggaaatttacaagtttgtgaaccaacagataaacaaaggccaattt
ccaagatttaaaaaagtaattgccttgagcatgtagccaacgtgacaagt
gtgacattcttctctgctcatgttattttatttagtaaccatataaccaa
gcacatatacataacccagatttttttctattttaatagtgatgtattaa
aaataagtctaaattttaatactggtttgctttcaactaagaatacctac
tgtataccacttaaatatccattaatgctctaaaactccaagaaggataa
ttaagagtctacttagaaacagcacttcacagggctgctatagaattatt
tgggaacaaactgaaaacttgacttgaaatcttactaacattgatcattg
ctcagcttctgaatgggctaatggtgctgttcttacctactaatatggtt
tcacattggggtattttttggggggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_108668146_108669192
seq2: B6Ng01-011H14.b_94_1140

seq1  ATCTCTCCAGCCCCGCAAAATTCTTTTCTTTTTTTTTTTTAAGATAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGCCCCGCAAAATTCTTTTCTTTTTTTTTTTTAAGATAAATT  50

seq1  CTTTTTCTAATTAGATATTTTCTTTATTTACATTTCAAACGTTATCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTAATTAGATATTTTCTTTATTTACATTTCAAACGTTATCCCCT  100

seq1  TTCCTAGTTTCCCCTCTGAAAATCTGAAAATCCCCTTTCCCCTCCCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTTTCCCCTCTGAAAATCTGAAAATCCCCTTTCCCCTCCCCCTC  150

seq1  CCCCTGCTCACCAACCTGCCCACTCCTGCTTCCCTGTCCTGGCATTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTCACCAACCTGCCCACTCCTGCTTCCCTGTCCTGGCATTCCCT  200

seq1  TACCCTGGGGGATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGGGGATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTG  250

seq1  CTGAACAACTAGGTCATCCTCTGCTACATATGCAACTAGAGCCATGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAACTAGGTCATCCTCTGCTACATATGCAACTAGAGCCATGAGTC  300

seq1  CCTTCATGTGTTTTCTTTGATTGGTAGTTTAGTCTCAGGGAGCTCTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTGTTTTCTTTGATTGGTAGTTTAGTCTCAGGGAGCTCTGGGG  350

seq1  GTACTGGTTAGTTCATATTGTTCCAAAATTAATTTCATTGCTACTTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTTAGTTCATATTGTTCCAAAATTAATTTCATTGCTACTTCATA  400

seq1  GCTGTAATTTTGCTAGTGTCGACTCCATAATGTGGTTATTTTTTCTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATTTTGCTAGTGTCGACTCCATAATGTGGTTATTTTTTCTAAAA  450

seq1  TAGAGGTTTGCCAAAGGGGGCGCTACCCACAGTTTGGGATCCACTGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTTTGCCAAAGGGGGCGCTACCCACAGTTTGGGATCCACTGATCT  500

seq1  GTGGGATGAGGCTATGGATCAGAATTAATTTTGGATCTTTAGCACCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATGAGGCTATGGATCAGAATTAATTTTGGATCTTTAGCACCTACA  550

seq1  TAAAAAGCCAATAAACCAGATGCAGCAAGTGCCTGTGATCTCAGCTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCCAATAAACCAGATGCAGCAAGTGCCTGTGATCTCAGCTCCAA  600

seq1  GGAGGCAGAGATAGGTGAAGCTCTGGAGCTCATTAGCCTAGTGGAATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGATAGGTGAAGCTCTGGAGCTCATTAGCCTAGTGGAATTGA  650

seq1  TAAGCTCCTTGTTCAATGGAAACTTCTAGCTCAAAAAATAGGGATAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCCTTGTTCAATGGAAACTTCTAGCTCAAAAAATAGGGATAGTGG  700

seq1  TTAACCTGAAATTGTCTTCTGACCTCCACCTGTTATACACATTCGTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTGAAATTGTCTTCTGACCTCCACCTGTTATACACATTCGTGTGC  750

seq1  ATGAGCACGTGCGCGCGCGCACACACACACAAATACATGTATATATGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACGTGCGCGCGCGCACACACACACAAATACATGTATATATGGCA  800

seq1  TACATACATACACAAGAATAAAATATAATTAGAGAAAGAATCTCCACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACACAAGAATAAAATATAATTAGAGAAAGAATCTCCACACA  850

seq1  CTAATTTTTACTAATGGTTATTTCTTTATTTGCTTTTTTTGT-GGGGGAG  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTAATTTTTACTAATGGTTATTTCTTTATTTGCTTTTTTTGTGGGGGGAG  900

seq1  GTCTG-TTCATTGAG-ACAGTCTCATTTTTTCCTCCATTCTGGCCTCTAA  947
      ||||| ||||||||| |||||||||||||||||| |||||||||||||||
seq2  GTCTGTTTCATTGAGAACAGTCTCATTTTTTCCT-CATTCTGGCCTCTAA  949

seq1  CTTGCATCAATCCTTCCGCCTCTGTT-GAAATACAGGCTTTGACTATGCC  996
      || |||||||||||||  | | |||| |||||||| |||||||||||| |
seq2  CTAGCATCAATCCTTCGCCTTTTGTTGGAAATACA-GCTTTGACTATG-C  997

seq1  TGACTTATCAGTGACATTTTCGTGTGTAATTTTCTCATCAAATAGTAACA  1046
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGACTTATCAGTGACATTTTCGTGTGTAATTTTCTCATC-AATAGTAACA  1046

seq1  G  1047
      |
seq2  G  1047

seq1: chrX_108780624_108781711
seq2: B6Ng01-011H14.g_67_1147 (reverse)

seq1  --CACCCCCCCCAAAAAAAACCCCAATGTGAAACCATATTAGTAGGTTAA  48
        | |||||||||||||| ||||||||||||||||||||||||||||  |
seq2  CACCCCCCCCCCAAAAAATACCCCAATGTGAAACCATATTAGTAGGT--A  48

seq1  AGAAACAGCACCATTAGCCCATTTCAGAGGCTGAACCATTGATCAATGTT  98
      || |||||||||||||||||| |||||| |||| | || |||||||||||
seq2  AG-AACAGCACCATTAGCCCA-TTCAGAAGCTG-AGCAATGATCAATGTT  95

seq1  AGTAAGATTTTCAAGTCAAGTTTTCAGTTTGTTTCCCAAATAATTTCTAT  148
      ||||||| ||||||||||||||||||||||| ||||||||||| ||||||
seq2  AGTAAGA-TTTCAAGTCAAGTTTTCAGTTTG-TTCCCAAATAA-TTCTAT  142

seq1  AGCAGCCCTGTGAAGTGCTGTTTCTAAGTAGACTCTTTAATTATCCTTCT  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCAGCCCTGTGAAGTGCTGTTTCTAAGTAGACTC-TTAATTATCCTTCT  191

seq1  TGGAGTTTTAGAGCATTAATGGATATTTAAGTGGTATACAGTAGGTATTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTTAGAGCATTAATGGATATTTAAGTGGTATACAGTAGGTATTC  241

seq1  TTAGTTGAAAGCAAACCAGTATTAAAATTTAGACTTATTTTTAATACATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGAAAGCAAACCAGTATTAAAATTTAGACTTATTTTTAATACATC  291

seq1  ACTATTAAAATAGAAAAAAATCTGGGTTATGTATATGTGCTTGGTTATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAAATAGAAAAAAATCTGGGTTATGTATATGTGCTTGGTTATAT  341

seq1  GGTTACTAAATAAAATAACATGAGCAGAGAAGAATGTCACACTTGTCACG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTAAATAAAATAACATGAGCAGAGAAGAATGTCACACTTGTCACG  391

seq1  TTGGCTACATGCTCAAGGCAATTACTTTTTTAAATCTTGGAAATTGGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACATGCTCAAGGCAATTACTTTTTTAAATCTTGGAAATTGGCCT  441

seq1  TTGTTTATCTGTTGGTTCACAAACTTGTAAATTTCCTTTATAAAAGGTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATCTGTTGGTTCACAAACTTGTAAATTTCCTTTATAAAAGGTGT  491

seq1  CTAGCACATGCTAGCCTAGTTAGCCAAGGACAGTATTGAAATTATGATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACATGCTAGCCTAGTTAGCCAAGGACAGTATTGAAATTATGATCC  541

seq1  CCCCGGCTTTATCTTTTTACAGGGGTTTACCACATCACCCAACTTATGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCTTTATCTTTTTACAGGGGTTTACCACATCACCCAACTTATGTG  591

seq1  GTGATGAAGAGAGAACCCAGGGCTCATTACATGCTAGGCAAGTAGTCTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAGAGAGAACCCAGGGCTCATTACATGCTAGGCAAGTAGTCTAT  641

seq1  CAGCTGAACTATATTTCTAGCCCAATTATTAAAAGAATCAATATATTAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAACTATATTTCTAGCCCAATTATTAAAAGAATCAATATATTAAT  691

seq1  TGCACTTATGCATCTGAGATACTTTTAAATTACATACTAGAGTACTATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTATGCATCTGAGATACTTTTAAATTACATACTAGAGTACTATTA  741

seq1  TTGTTTATTAGCTTAGATGTATGATTTATATTTCTTTTAAGTCAGAGTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTAGCTTAGATGTATGATTTATATTTCTTTTAAGTCAGAGTAT  791

seq1  CATATAACCAGACTGTTCATGAGTTTATTATAAGGCACAGGATGAGCACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAACCAGACTGTTCATGAGTTTATTATAAGGCACAGGATGAGCACA  841

seq1  AATTTCTAAATAAACTGTTTCCATCTTCCATATGTTAATGTCACAGGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAAATAAACTGTTTCCATCTTCCATATGTTAATGTCACAGGTGT  891

seq1  ATATAACTATGCCTTGCTACTTCGAGCTGGTGATTTAAAATTAAAACTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTATGCCTTGCTACTTCGAGCTGGTGATTTAAAATTAAAACTAT  941

seq1  CAGTACAGACAGTAAAAATGTTTCACAGATGATTGAAATAAAATACTTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGACAGTAAAAATGTTTCACAGATGATTGAAATAAAATACTTGG  991

seq1  GGTAAATTTTGTGGGAGCATTATAATCTTAGAAGAAAAACAATTCACCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATTTTGTGGGAGCATTATAATCTTAGAAGAAAAACAATTCACCTA  1041

seq1  ATATTAGCAGTAACGTTCGTATTTCAGTTCTGAAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCAGTAACGTTCGTATTTCAGTTCTGAAGAATTC  1081