BAC Information

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BAC

Clone NameB6Ng01-011L05
ChromosomeX (Build37)
Map Location 143,447,883 - 143,498,153
singlet/doubletdoublet
Overlap geneHtr2c
Upstream geneLOC237096, LOC100039558, EG666730, EG245663
Downstream geneIl13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011L05.bB6Ng01-011L05.g
ACCDH847011DH847012
length1,1361,004
definitionDH847011|Mus musculus domesticus DNA, BAC clone: B6Ng01-011L05, 5' end.DH847012|Mus musculus domesticus DNA, BAC clone: B6Ng01-011L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,447,883 - 143,449,025)(143,497,151 - 143,498,153)
sequence
gaattccagggagttaggaaattaaaccttaagtgcaattaggtaggtga
tggtagtaaggattttttttttgaaacagtgatatatttagcttaagtac
aaagaagagcaacaatgagttttgtgtatatatttgcttacagaattgca
cactaggaccaggtcaagtagctgttatactggttctttagctttcaatt
aagctttagatctactaactcagttctgtttggcatagcaagtatggtta
cactgtaccagcgactttcctattcatacgttactataatcttttcaacc
tatatgaaggttttacttctgagccatatttgttttctggctagacatac
tcattttatgcttgtcagctatttttcttccttctcaagtgttccattat
aaaaataatttcacagctaccttgcgtactatcccagcaaccttgaaggg
gataaattggcatagtgtttcatgggctgatgaagctacatggtgtagaa
ttcctttctatctcctaaattccattagatcatttagcaagattcttttg
gaagatactgtacattctccacttttaatatcatagaactctactcattt
gcattgacctgctaattaaagtagcaaaaataacatgctgaatcacagga
caattattttgaatatttccatcctggctttcttcgtattttcattatca
tttagaatacacattaatttttgtttgtgtggtaatttcagccaacttat
cttcatttaggtcaccctgtgcaagaaaatgaattatctcatagttccac
tcatttgcttggcttcttctactgtacaaaactgtgaaattccacagata
ttttataagaggttctattatcttttcataatttcttttatcaccacaat
catctctcatcattttgaaataatttattggtttaaatgattccttaatc
tcagtgcttattatctaagcagggtaaagaaaaggtggaagaagaaaatg
caaagtggagtgtatgttagtattcccagtcttcttgtgctctctgaact
acacagcagtcttcagaatatgcttcaaccaaggaaagggatgtcatcga
ttgatcatctatcaccgtttcatgatttttagaact
gaattctgtaaattattcttccctgtaccacacagtatacaaatacagta
tgccaagaagtttagaacaatataaacactaatcctgttgtttatgattt
cagtgagtaatagtctatgtacccatgcctgtgtctgtgtgttgcaggtg
gtgaacaaaataaatgtaatttaaatgcacatttttaaaatcactaccct
ccaaagctccatagtctcataaggtgagaccatgtcatgatgtccgaaag
ccatcaaatgattgcatatgtttgatcatcgttttcaaatggaagaactg
acttgcctaacattaaaacccatgtaaaagagttataattgaatatcttg
gaaagtggtcccatttgtgaaataacagcatcttcataacagaagcacct
gcttttaatttttttgaattatatatcttttttttttatttacgtgagta
cactgtagctgtcttcagacacaccagaagagggcataggatccctttaa
aaatggctatgagctaccatgtcgttgctgggaattgaactcaggacctc
tggaagagcagtcagttttcttaactgctgagccatctctccagcccacc
tgcttttacatttcattgaaagattattctacataaagccaaatcatgat
ttttctaggcactcaaatgcagcagagatgtggtttgctgttacacagat
tcatagtctaatacagactaactggaggtaagtttgttaaaatattaaca
tatcctgcagtttggtttaatgataattttttaaagcaaaagaaaacaac
tttatatggctttgcgaagctctttgagcacatttagaaatggaccacca
accaggcagcatacaccagctgatatgagaccctcaacacatatacagca
gatgactgccaaggtctgggttcagtcagagaagatgcacctaaccctca
atagaatggaggccccagggagtttagaggtctgattaggttggggggtg
gggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_143447883_143449025
seq2: B6Ng01-011L05.b_44_1179

seq1  GAATTCCAGGGAGTTAGGAAATTAAACCTTAAGTGCAATTAGGTAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGTTAGGAAATTAAACCTTAAGTGCAATTAGGTAGGTGA  50

seq1  TGGTAGTAAGGATTTTTTTTTTGAAACAGTGATATATTTAGCTTAAGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAAGGATTTTTTTTTTGAAACAGTGATATATTTAGCTTAAGTAC  100

seq1  AAAGAAGAGCAACAATGAGTTTTGTGTATATATTTGCTTACAGAATTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGCAACAATGAGTTTTGTGTATATATTTGCTTACAGAATTGCA  150

seq1  CACTAGGACCAGGTCAAGTAGCTGTTATACTGGTTCTTTAGCTTTCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGACCAGGTCAAGTAGCTGTTATACTGGTTCTTTAGCTTTCAATT  200

seq1  AAGCTTTAGATCTACTAACTCAGTTCTGTTTGGCATAGCAAGTATGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTAGATCTACTAACTCAGTTCTGTTTGGCATAGCAAGTATGGTTA  250

seq1  CACTGTACCAGCGACTTTCCTATTCATACGTTACTATAATCTTTTCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTACCAGCGACTTTCCTATTCATACGTTACTATAATCTTTTCAACC  300

seq1  TATATGAAGGTTTTACTTCTGAGCCATATTTGTTTTCTGGCTAGACATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAGGTTTTACTTCTGAGCCATATTTGTTTTCTGGCTAGACATAC  350

seq1  TCATTTTATGCTTGTCAGCTATTTTTCTTCCTTCTCAAGTGTTCCATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATGCTTGTCAGCTATTTTTCTTCCTTCTCAAGTGTTCCATTAT  400

seq1  AAAAATAATTTCACAGCTACCTTGCGTACTATCCCAGCAACCTTGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTTCACAGCTACCTTGCGTACTATCCCAGCAACCTTGAAGGG  450

seq1  GATAAATTGGCATAGTGTTTCATGGGCTGATGAAGCTACATGGTGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTGGCATAGTGTTTCATGGGCTGATGAAGCTACATGGTGTAGAA  500

seq1  TTCCTTTCTATCTCCTAAATTCCATTAGATCATTTAGCAAGATTCTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTATCTCCTAAATTCCATTAGATCATTTAGCAAGATTCTTTTG  550

seq1  GAAGATACTGTACATTCTCCACTTTTAATATCATAGAACTCTACTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACTGTACATTCTCCACTTTTAATATCATAGAACTCTACTCATTT  600

seq1  GCATTGACCTGCTAATTAAAGTAGCAAAAATAACATGCTGAATCACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGACCTGCTAATTAAAGTAGCAAAAATAACATGCTGAATCACAGGA  650

seq1  CAATTATTTTGAATATTTCCATCCTGGCTTTCTTCGTATTTTCATTATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTTTGAATATTTCCATCCTGGCTTTCTTCGTATTTTCATTATCA  700

seq1  TTTAGAATACACATTAATTTTTGTTTGTGTGGTAATTTCAGCCAACTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATACACATTAATTTTTGTTTGTGTGGTAATTTCAGCCAACTTAT  750

seq1  CTTCATTTAGGTCACCCTGTGCAAGAAAATGAATTATCTCATAGTTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTAGGTCACCCTGTGCAAGAAAATGAATTATCTCATAGTTCCAC  800

seq1  TCATTTGCTTGGCTTCTTCTACTGTACAAAACTGTGAAATTCCACAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCTTGGCTTCTTCTACTGTACAAAACTGTGAAATTCCACAGATA  850

seq1  TTTTATAAGAGGTTCTATTATCTTTTCATAATTTCTTTTATCA-CACAAT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTATAAGAGGTTCTATTATCTTTTCATAATTTCTTTTATCACCACAAT  900

seq1  CATCTCTCATCATTTTGAATTAATTTTATTGGTTTTAAATGATTCCTTAA  949
      ||||||||||||||||||| ||| |||||||| |||||||||||||||||
seq2  CATCTCTCATCATTTTGAAATAA-TTTATTGG-TTTAAATGATTCCTTAA  948

seq1  TCTCAGTGCTTATTATCTAAGCAGGGTACAG-AAAGGTGGAAGAAG-AAA  997
      |||||||||||||||||||||||||||| || |||||||||||||| |||
seq2  TCTCAGTGCTTATTATCTAAGCAGGGTAAAGAAAAGGTGGAAGAAGAAAA  998

seq1  TGGAAAGTGTAGTGTATGTTAGTATCCCAAGTCT--CTGTGCTCTCTGAC  1045
      || |||||| ||||||||||||||| || |||||   |||||||||||| 
seq2  TGCAAAGTGGAGTGTATGTTAGTATTCCCAGTCTTCTTGTGCTCTCTGAA  1048

seq1  CTTACACAGCAGTCTTTCTAGAATATTGCTTCAACACAAAGGAAAGGGAT  1095
      | ||||||||||||||   |||||| |||||||  || ||||||||||||
seq2  C-TACACAGCAGTCTT--CAGAATA-TGCTTCA--ACCAAGGAAAGGGAT  1092

seq1  GTTCATCGATTGAGTCATCTACCCACGGTTTCATTGATTTTTAGAACT  1143
      | ||||||||||| |||||||  ||| |||||| ||||||||||||||
seq2  G-TCATCGATTGA-TCATCTA-TCACCGTTTCA-TGATTTTTAGAACT  1136

seq1: chrX_143497151_143498153
seq2: B6Ng01-011L05.g_66_1069 (reverse)

seq1  CCCCCA-CCCCCAACCTAATCAGACCTCTAAACTCCCTGGGGCCTCCATT  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCCAACCTAATCAGACCTCTAAACTCCCTGGGGCCTCCATT  50

seq1  CTATTGAGGGTTAGGTGCATCTTCTCTGACTGAACCCAGACC-TGGCAGT  98
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTATTGAGGGTTAGGTGCATCTTCTCTGACTGAACCCAGACCTTGGCAGT  100

seq1  CATCTGCTGTATATGTGTTGAGGGTCTCATATCAGCTGGTGTATGCTGCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTGTATATGTGTTGAGGGTCTCATATCAGCTGGTGTATGCTGCC  150

seq1  TGGTTGGTGGTCCATTTCTAAATGTGCTCAAAGAGCTTCGCAAAGCCATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTGGTCCATTTCTAAATGTGCTCAAAGAGCTTCGCAAAGCCATA  200

seq1  TTAAAGTTGTTTTCTTTTGCTTTAAAAAATTATCATTAAACCAAACTGCA  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAAAGTTGTTTTCTTTTGCTTTAAAAAATTATCATTAAACCAAACTGCA  249

seq1  GGATATGTTAATATTTTAACAAACTTACCTCCAGTTAGTCTGTATTAGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTTAATATTTTAACAAACTTACCTCCAGTTAGTCTGTATTAGAC  299

seq1  TATGAATCTGTGTAACAGCAAACCACATCTCTGCTGCATTTGAGTGCCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCTGTGTAACAGCAAACCACATCTCTGCTGCATTTGAGTGCCTA  349

seq1  GAAAAATCATGATTTGGCTTTATGTAGAATAATCTTTCAATGAAATGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCATGATTTGGCTTTATGTAGAATAATCTTTCAATGAAATGTAA  399

seq1  AAGCAGGTGGGCTGGAGAGATGGCTCAGCAGTTAAGAAAACTGACTGCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTGGGCTGGAGAGATGGCTCAGCAGTTAAGAAAACTGACTGCTC  449

seq1  TTCCAGAGGTCCTGAGTTCAATTCCCAGCAACGACATGGTAGCTCATAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGTCCTGAGTTCAATTCCCAGCAACGACATGGTAGCTCATAGC  499

seq1  CATTTTTAAAGGGATCCTATGCCCTCTTCTGGTGTGTCTGAAGACAGCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAAGGGATCCTATGCCCTCTTCTGGTGTGTCTGAAGACAGCTA  549

seq1  CAGTGTACTCACGTAAATAAAAAAAAAAGATATATAATTCAAAAAAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTCACGTAAATAAAAAAAAAAGATATATAATTCAAAAAAATTA  599

seq1  AAAGCAGGTGCTTCTGTTATGAAGATGCTGTTATTTCACAAATGGGACCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGTGCTTCTGTTATGAAGATGCTGTTATTTCACAAATGGGACCA  649

seq1  CTTTCCAAGATATTCAATTATAACTCTTTTACATGGGTTTTAATGTTAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAGATATTCAATTATAACTCTTTTACATGGGTTTTAATGTTAGG  699

seq1  CAAGTCAGTTCTTCCATTTGAAAACGATGATCAAACATATGCAATCATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGTTCTTCCATTTGAAAACGATGATCAAACATATGCAATCATTT  749

seq1  GATGGCTTTCGGACATCATGACATGGTCTCACCTTATGAGACTATGGAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTTCGGACATCATGACATGGTCTCACCTTATGAGACTATGGAGC  799

seq1  TTTGGAGGGTAGTGATTTTAAAAATGTGCATTTAAATTACATTTATTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGGTAGTGATTTTAAAAATGTGCATTTAAATTACATTTATTTTG  849

seq1  TTCACCACCTGCAACACACAGACACAGGCATGGGTACATAGACTATTACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACCTGCAACACACAGACACAGGCATGGGTACATAGACTATTACT  899

seq1  CACTGAAATCATAAACAACAGGATTAGTGTTTATATTGTTCTAAACTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATCATAAACAACAGGATTAGTGTTTATATTGTTCTAAACTTCT  949

seq1  TGGCATACTGTATTTGTATACTGTGTGGTACAGGGAAGAATAATTTACAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACTGTATTTGTATACTGTGTGGTACAGGGAAGAATAATTTACAG  999

seq1  AATTC  1003
      |||||
seq2  AATTC  1004