BAC Information

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BAC

Clone NameB6Ng01-011O05
ChromosomeX (Build37)
Map Location 148,005,398 - 148,142,360
singlet/doubletdoublet
Overlap genePhf8, LOC385448
Upstream geneApex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760
Downstream geneLOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011O05.bB6Ng01-011O05.g
ACCDH847145DH847146
length1,117669
definitionDH847145|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O05, 5' end.DH847146|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,005,398 - 148,006,524)(148,141,821 - 148,142,360)
sequence
gaattctacaaaataacaaactcaagttgaagatgattacaaaggcatgt
ttcaacaggtggcatacaccacaaggcaggaggtatagtagtaagaaact
cagagaagcctgggttctggttcctgctctttcacttgaaagcctttcag
agtcccagtttcctgatccataagctgaggaataactttaccgagctttc
aaatctttggtaaaattgagaggtaatatagagcccctcacacagtgcct
ggcagagtaagtactcaataaatgtgagtcattgttattaatagactttt
tagcaaagagaaaactcagtgtgggctggtaaagtagcagaggcaccaga
gaaaaattggacttgaggatgtttaagctgtcttagaagtctatttcgtg
tctaagagatctgtgtatttgtcgttccctcccttccctactcgtctgtg
aatgtctgtctttccctccctccctcttactttctctttccctccttccc
ttcccccctttcttccttcctttgtttctttctttcattgtatatgtatg
tatgcatgtatgtgtatccatgttacagggtggtttgcttctagaatttg
ggcttctgtcttcactgcttacagcatgtttcactgtctacactgtagtc
tacagagtctacatcctacctcatttttctccatttcactcactaatacc
ttttaggagtcagtcatatgactatatcatttccagttcttacataatcc
agttttatacaaacagaactttgggctggctaggaaaaaaaactcatgag
atagaacatgacttgttcattgactttcaaacattttaaagcaatagaat
actttttttttcaaataagatcttatatggaaaccagtttatataacaaa
tcaaagcatagctgctttgagtaggataaaggtagagacctagagctccc
cttgttctctcatctgctttcacataccatccatccccaagatttctcca
ggaagcgcaaagaagcacagaacatcttttaaaataactttttagtctgg
cttttaattatcggctgaacaaaacaagctctaagagctggtcatcagat
acctttcctaggtcaga
gaattcaaactcaaattcaaactaggattcccaaacccaggcattttgtc
ttgcccatggtccacaaatgtaggtctacatagtttgtatatccaaataa
agctacgggcaggtaaatctctagactctaacatttagttaaaaaggtag
aaatatagctgagcacagcgacacaagtctgtaatcccagctactcagga
ggctgaaatagaaagatcaagtgccagcctagataatttagtgatattct
gcctcaaaaaaatgcattgggcatagtggcaaatgcctttaattctagat
ttctggaggtagactctgaagcaggtggatctctgagagtttgaggccag
cttgctctacacagcgatttccatgctagccatagctatatagtgagacc
caatattaaacaaaaaaaattacttgaaaactgaattcaagaatacatta
aagcatcattcatcatgatcaaattggcttcattccatacatgctgaaat
ggttcaatatatacatgtcaatagatatatttaaccatataacttgacta
taagagaaatctcatgatcatctcagtagataagaacattcctttgacaa
aatccactccattcatgataaaaagaccccaaaacaggctggagatgttg
cttggtacttaaaagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_148005398_148006524
seq2: B6Ng01-011O05.b_47_1163

seq1  GAATTCTACAAAATAACAAACTCAAGTTGAAGATGATTACAAAGGCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAAATAACAAACTCAAGTTGAAGATGATTACAAAGGCATGT  50

seq1  TTCAACAGGTGGCATACACCACAAGGCAGGAGGTATAGTAGTAAGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAGGTGGCATACACCACAAGGCAGGAGGTATAGTAGTAAGAAACT  100

seq1  CAGAGAAGCCTGGGTTCTGGTTCCTGCTCTTTCACTTGAAAGCCTTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCCTGGGTTCTGGTTCCTGCTCTTTCACTTGAAAGCCTTTCAG  150

seq1  AGTCCCAGTTTCCTGATCCATAAGCTGAGGAATAACTTTACCGAGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGTTTCCTGATCCATAAGCTGAGGAATAACTTTACCGAGCTTTC  200

seq1  AAATCTTTGGTAAAATTGAGAGGTAATATAGAGCCCCTCACACAGTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTGGTAAAATTGAGAGGTAATATAGAGCCCCTCACACAGTGCCT  250

seq1  GGCAGAGTAAGTACTCAATAAATGTGAGTCATTGTTATTAATAGACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTAAGTACTCAATAAATGTGAGTCATTGTTATTAATAGACTTTT  300

seq1  TAGCAAAGAGAAAACTCAGTGTGGGCTGGTAAAGTAGCAGAGGCACCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGAGAAAACTCAGTGTGGGCTGGTAAAGTAGCAGAGGCACCAGA  350

seq1  GAAAAATTGGACTTGAGGATGTTTAAGCTGTCTTAGAAGTCTATTTCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTGGACTTGAGGATGTTTAAGCTGTCTTAGAAGTCTATTTCGTG  400

seq1  TCTAAGAGATCTGTGTATTTGTCGTTCCCTCCCTTCCCTACTCGTCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGATCTGTGTATTTGTCGTTCCCTCCCTTCCCTACTCGTCTGTG  450

seq1  AATGTCTGTCTTTCCCTCCCTCCCTCTTACTTTCTCTTTCCCTCCTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGTCTTTCCCTCCCTCCCTCTTACTTTCTCTTTCCCTCCTTCCC  500

seq1  TTCCCCCCTTTCTTCCTTCCTTTGTTTCTTTCTTTCATTGTATATGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCTTTCTTCCTTCCTTTGTTTCTTTCTTTCATTGTATATGTATG  550

seq1  TATGCATGTATGTGTATCCATGTTACAGGGTGGTTTGCTTCTAGAATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATGTATGTGTATCCATGTTACAGGGTGGTTTGCTTCTAGAATTTG  600

seq1  GGCTTCTGTCTTCACTGCTTACAGCATGTTTCACTGTCTACACTGTAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGTCTTCACTGCTTACAGCATGTTTCACTGTCTACACTGTAGTC  650

seq1  TACAGAGTCTACATCCTACCTCATTTTTCTCCATTTCACTCACTAATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTCTACATCCTACCTCATTTTTCTCCATTTCACTCACTAATACC  700

seq1  TTTTAGGAGTCAGTCATATGACTATATCATTTCCAGTTCTTACATAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAGTCAGTCATATGACTATATCATTTCCAGTTCTTACATAATCC  750

seq1  AGTTTTATACAAACAGAACTTTGGGCTGGCTAGGAAAAAAAACTCATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATACAAACAGAACTTTGGGCTGGCTAGGAAAAAAAACTCATGAG  800

seq1  ATAGAACATGACTTGTTCATTGACTTTCAAACATTTTAAAGCAATAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACATGACTTGTTCATTGACTTTCAAACATTTTAAAGCAATAGAAT  850

seq1  ACTTTTTTTTTCAAATAAGATCTTATATGGAAACCAGTTTATATAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTCAAATAAGATCTTATATGGAAACCAGTTTATATAACAAA  900

seq1  TCAAAGCATAGCTGCTTTGAGTAGGATAAAGGTTAGAGACCTAGAGCTCC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAAAGCATAGCTGCTTTGAGTAGGATAAAGG-TAGAGACCTAGAGCTCC  949

seq1  CCTTGTTCCTCTCATCTGCCTTCCACATACCATCCATCCCCAAGATTTCT  1000
      ||||||| |||||||||| ||| |||||||||||||||||||||||||||
seq2  CCTTGTT-CTCTCATCTG-CTTTCACATACCATCCATCCCCAAGATTTCT  997

seq1  CCCAGGAAGCGCAAAGAAACCACAGAACATCTTTTAAAAATTACCTTTTT  1050
       ||||||||||||||| || |||||||||||||||||||  || ||||||
seq2  -CCAGGAAGCGCAAAG-AAGCACAGAACATCTTTTAAAA--TAACTTTTT  1043

seq1  AGTCTTGGCTTTTAATTATACAGCTGAAC-AAACAAGCTCT-AGAGCTTG  1098
      |||| |||||||||||||| | ||||||| ||||||||||| |||||| |
seq2  AGTC-TGGCTTTTAATTAT-CGGCTGAACAAAACAAGCTCTAAGAGCTGG  1091

seq1  TTCCATCAGATAACTTTCCCTAGGTCAGA  1127
      |  ||||||||| |||| |||||||||||
seq2  T--CATCAGATACCTTT-CCTAGGTCAGA  1117

seq1: chrX_148141821_148142360
seq2: B6Ng01-011O05.g_67_606 (reverse)

seq1  ATATGGTTAAATATATCTATTGACATGTATATATTGAACCATTTCAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTAAATATATCTATTGACATGTATATATTGAACCATTTCAGCAT  50

seq1  GTATGGAATGAAGCCAATTTGATCATGATGAATGATGCTTTAATGTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAATGAAGCCAATTTGATCATGATGAATGATGCTTTAATGTATTC  100

seq1  TTGAATTCAGTTTTCAAGTAATTTTTTTTGTTTAATATTGGGTCTCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCAGTTTTCAAGTAATTTTTTTTGTTTAATATTGGGTCTCACTA  150

seq1  TATAGCTATGGCTAGCATGGAAATCGCTGTGTAGAGCAAGCTGGCCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTATGGCTAGCATGGAAATCGCTGTGTAGAGCAAGCTGGCCTCAA  200

seq1  ACTCTCAGAGATCCACCTGCTTCAGAGTCTACCTCCAGAAATCTAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGAGATCCACCTGCTTCAGAGTCTACCTCCAGAAATCTAGAATT  250

seq1  AAAGGCATTTGCCACTATGCCCAATGCATTTTTTTGAGGCAGAATATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATTTGCCACTATGCCCAATGCATTTTTTTGAGGCAGAATATCAC  300

seq1  TAAATTATCTAGGCTGGCACTTGATCTTTCTATTTCAGCCTCCTGAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCTAGGCTGGCACTTGATCTTTCTATTTCAGCCTCCTGAGTAG  350

seq1  CTGGGATTACAGACTTGTGTCGCTGTGCTCAGCTATATTTCTACCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTACAGACTTGTGTCGCTGTGCTCAGCTATATTTCTACCTTTTT  400

seq1  AACTAAATGTTAGAGTCTAGAGATTTACCTGCCCGTAGCTTTATTTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATGTTAGAGTCTAGAGATTTACCTGCCCGTAGCTTTATTTGGAT  450

seq1  ATACAAACTATGTAGACCTACATTTGTGGACCATGGGCAAGACAAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACTATGTAGACCTACATTTGTGGACCATGGGCAAGACAAAATGC  500

seq1  CTGGGTTTGGGAATCCTAGTTTGAATTTGAGTTTGAATTC  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGGGAATCCTAGTTTGAATTTGAGTTTGAATTC  540