BAC Information

Click to search

BAC

Clone NameB6Ng01-012I23
ChromosomeX (Build37)
Map Location 123,162,213 - 123,303,715
singlet/doubletdoublet
Overlap geneLOC665679
Upstream geneEG665579, EG665611, EG626048, LOC100040410, LOC100039903
Downstream gene4932411N23Rik, Gm381, LOC100040472, Gm382, 4921511C20Rik, 4930412D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012I23.bB6Ng01-012I23.g
ACCDH847621DH847622
length961735
definitionDH847621|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I23, 5' end.DH847622|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,303,247 - 123,303,715)(123,162,213 - 123,163,098)
sequence
gaattcctccattttaaaatattttttataattttttttaattatctcac
aaatacattctaataaaatcttctattttaacttgcagcgaagatctcta
ctttctcaaatagtgaacattatttttctacgtcttcaataatacaagcc
tttttccatcaatttttttacaacttatccatatttttgtataatttttg
catttttaccaaatatgctgtataagaacatctcgaattttatcagaaaa
tgtttctatccaatttttctaataggaaaaacaggttttctatgtttgcc
tttctaccagtagtttttttttcattgaattcttccattttaacacattt
ttgtattaatttggtcaactttctcataataaattcaattcaatcttgta
tgtttatattaaaatattgatctcttctttgcaaacttgtgaacatgagt
tttccctgttttccatttgaccaggtttttttttctatcaaattcctcca
tttttccacctttattgtaatttttttctttttatccaaatgctgtttaa
gaacatctctaattttatcagaaaattattctctcagtgggaacaaaaca
cccatggaaggagttacagaaacaaagtatggagctgagatgaaaggatg
gaccatgtagagactgccatatccagggatccaccccataatcagcttcc
aaatgctgacaccattgcatacactagcaagattttactgaaaggaccca
gatgtagctgtctcttgtgagactatgccggggcctagcaaacacagaag
tggatgctcacagtcagctaatggatggatcacagggctcccaatggagg
gagctagagaaagtacccaaggagctaaaggaatcatcaaccctataggt
ggaacaacattatgaactaaccagtactcctgagctctgactctagctgc
atatgtatcaa
gaattctggacaactgctctctgtctcaacagcaccagctcttagcatta
gattgagcccccatatgtctctccctggagtcagtttttcccctcccccc
tctctcatttgcagcctggtggttcagccagattgcctgagaagcaagtt
tggctatgcaccctgccttagaccctacttgctgcctttcccaacccctg
catttgtggagaacttttggtagcacttatagaaatttgacaagtacttg
tcactgggctcaagaaagtaggctctgataagaatattcacatttgggcg
acttcaaggatcaaggtgaacacagccaaggaatttgagacttccctttt
gtattggtaatcctgataagcagccaaacagagtgacttggggactttat
tgctttttttgattactacctggtttacctctttgtcaattgccttgttt
aatcacattgtctttgatctaagaactgaccacattctctgctactacct
agaattgtataaaagctggctggaacaattaaagccacttcagcctcaga
actggctggagtcctattataatgtttgtctaattgtcattttcttttaa
cttgctgcccttcccgcactgctccttagctctgctctcagttctcagcc
tgaaaaatgggtccccgtcccttgcatcctggcaggggcacctctttcag
ttagattttgacacagtcaaatgggcccaaaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_123303247_123303715
seq2: B6Ng01-012I23.b_161_629 (reverse)

seq1  GAGAGAATCATTTTCTGATAAAATTCGAGATGTTCTTAAACAGCATTTGG  50
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  GAGAGAATAATTTTCTGATAAAATTAGAGATGTTCTTAAACAGCATTTGG  50

seq1  ATAAAAAGAAAAAAATTACAATAAACATGGAAAAATGGAGGAATTTGATA  100
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  ATAAAAAGAAAAAAATTACAATAAAGGTGGAAAAATGGAGGAATTTGATA  100

seq1  GAAAAAAAAACCTGGTCAAATGGAAAACAGGGAAAACTCATGTTCACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAACCTGGTCAAATGGAAAACAGGGAAAACTCATGTTCACAAG  150

seq1  TTTGCAAAGAAGAGATCAATATTTTAATATAAACATACAAGATTGAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAGAAGAGATCAATATTTTAATATAAACATACAAGATTGAATTG  200

seq1  AATTTATTATGAGAAAGTTGACCAAATTAATACAAAAATGTGTTAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTATGAGAAAGTTGACCAAATTAATACAAAAATGTGTTAAAATG  250

seq1  GAAGAATTCAATGAAAAAAAAACTACTGGTAGAAAGGCAAACATAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTCAATGAAAAAAAAACTACTGGTAGAAAGGCAAACATAGAAAA  300

seq1  CCTGTTTTTCCTATTAGAAAAATTGGATAGAAACATTTTCTGATAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTTCCTATTAGAAAAATTGGATAGAAACATTTTCTGATAAAATT  350

seq1  CGAGATGTTCTTATACAGCATATTTGGTAAAAATGCAAAAATTATACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATGTTCTTATACAGCATATTTGGTAAAAATGCAAAAATTATACAAA  400

seq1  AATATGGATAAGTTGTAAAAAAATTGATGGAAAAAGGCTTGTATTATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGATAAGTTGTAAAAAAATTGATGGAAAAAGGCTTGTATTATTGA  450

seq1  AGACGTAGAAAAATAATGT  469
      |||||||||||||||||||
seq2  AGACGTAGAAAAATAATGT  469

seq1: chrX_123162213_123163098
seq2: B6Ng01-012I23.g_68_952

seq1  GAATTCTGGACAACTGCTCTCTGTCTCAACAGCACCAGCTCTTAGCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGACAACTGCTCTCTGTCTCAACAGCACCAGCTCTTAGCATTA  50

seq1  GATTGAGCCCCCATATGTCTCTCCCTGGAGTCAGTTTTTCCCCTCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGCCCCCATATGTCTCTCCCTGGAGTCAGTTTTTCCCCTCCCCCC  100

seq1  TCTCTCATTTGCAGCCTGGTGGTTCAGCCAGATTGCCTGAGAAGCAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTTGCAGCCTGGTGGTTCAGCCAGATTGCCTGAGAAGCAAGTT  150

seq1  TGGCTATGCACCCTGCCTTAGACCCTACTTGCTGCCTTTCCCAACCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGCACCCTGCCTTAGACCCTACTTGCTGCCTTTCCCAACCCCTG  200

seq1  CATTTGTGGAGAACTTTTGGTAGCACTTATAGAAATTTGACAAGTACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGGAGAACTTTTGGTAGCACTTATAGAAATTTGACAAGTACTTG  250

seq1  TCACTGGGCTCAAGAAAGTAGGCTCTGATAAGAATATTCACATTTGGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGCTCAAGAAAGTAGGCTCTGATAAGAATATTCACATTTGGGCG  300

seq1  ACTTCAAGGATCAAGGTGAACACAGCCAAGGAATTTGAGACTTCCCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGGATCAAGGTGAACACAGCCAAGGAATTTGAGACTTCCCTTTT  350

seq1  GTATTGGTAATCCTGATAAGCAGCCAAACAGAGTGACTTGGGGACTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTAATCCTGATAAGCAGCCAAACAGAGTGACTTGGGGACTTTAT  400

seq1  TGCTTTTTTTGATTACTACCTGGTTTACCTCTTTGTCAATTGCCTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTTGATTACTACCTGGTTTACCTCTTTGTCAATTGCCTTGTTT  450

seq1  AATCACATTGTCTTTGATCTAAGAACTGACCACATTCTCTGCTACTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATTGTCTTTGATCTAAGAACTGACCACATTCTCTGCTACTACCT  500

seq1  AGAATTGTATAAAAGCTGGCTGGAACAATTAAAGCCACTTCAGCCTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTATAAAAGCTGGCTGGAACAATTAAAGCCACTTCAGCCTCAGA  550

seq1  ACTGGCTGGAGTCCTATTATAATGTTTGTCTAATTGTCATTTTCTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGGAGTCCTATTATAATGTTTGTCTAATTGTCATTTTCTTTTAA  600

seq1  CTTGCTGCCCTTCCCGCACTGCTCCTTAGCTCTGCTCTCAGTTCTCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCCCTTCCCGCACTGCTCCTTAGCTCTGCTCTCAGTTCTCAGCC  650

seq1  TGAAAAATGGGTCCCCGTCCCTTGCATCCTGGCAGGGGCACCTCTTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGGGTCCCCGTCCCTTGCATCCTGGCAGGGGCACCTCTTTCAG  700

seq1  TTAGATTTTGACACAGTCAAATGGGCCCAAACCAACCACTCAGTTCCACA  750
      |||||||||||||||||||||||||||||||||||               
seq2  TTAGATTTTGACACAGTCAAATGGGCCCAAACCAA-NNNNNNNNNNNNNN  749

seq1  ATTCCTGCTACCAGACTGTGGAAGCTGACAAACACACTCTGACCTATTGA  800
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  NNNCCTGCTACCAGACTGTGGAAGCTGACAAACACACTCTGACCTATTGA  799

seq1  CTGATAAAGAGTTTCTCCAGTCAGCAGGGAGGACTCTAAGTTCCCAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAGAGTTTCTCCAGTCAGCAGGGAGGACTCTAAGTTCCCAGATA  849

seq1  AGGCCAGATAAGCATCCCCCCCCGGGGGGGGGGGGG  886
      ||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGATAAGCATCCCCCCCCGGGGGGGGGGGGG  885