BAC Information

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BAC

Clone NameB6Ng01-014C18
ChromosomeX (Build37)
Map Location 35,391,323 - 35,559,214
singlet/doubletdoublet
Overlap gene4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik
Upstream geneC330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik
Downstream geneEG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014C18.bB6Ng01-014C18.g
ACCDH848790DH848791
length1,0041,054
definitionDH848790|Mus musculus domesticus DNA, BAC clone: B6Ng01-014C18, 5' end.DH848791|Mus musculus domesticus DNA, BAC clone: B6Ng01-014C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,391,323 - 35,392,338)(35,558,176 - 35,559,214)
sequence
gaattcacaggctattacatcatcagaaaggactatacacactatagcag
tgtcacttaaaaatatcaacactatctcatgccagatctttacagctgtg
acatggtttaaattcaataatccatccccaagaggagcccacccaaagca
aaaatcaaatttatccatccattataagatgatccatccgtagactgcat
cttaacccaatacagtcatcatattgtagtttttagcagagtttgttctg
cgcaaaagacgctcctccttgcaaccgcttctgctatctaccatttgtgc
attggtgctgttgtgagagctacctcccactggtgaggcttcatacagca
cacagatggagccatcctctccaatcctgtaggacacttcataggggtca
acccacagtgtgagttcacttgggagaagcctgaacaactctctactgct
cagtccaatctgctgcgcagcctgactgacaagaggatccatcttatggt
tgatgcgaatacacctgtaacccgatcccttgcagggttgctctgggaac
cagtggtgtttgtagtgttctaccagcagctcctgcaggctctggctgaa
ggtctgcagcagctcctcattcctgaggcccttggtgcagaggaacttgc
agatgaaggttgctgcagcacagatctcaccaatcatggtggctgcaagg
gttaagaaaggggaagcatggaggtagaagataggtcagtagtgtgtccc
tgaaggcacaacagccacccacctttctagcaagatttggagtttagaga
aagcaagtgtgtgagtgaggcagctattagctctaggggccttttgcaaa
cttttcttttagaggaaatgttactggtggagagagagaaaggaggaaat
agctagcctggtcacatcactttgcctccccaggcacttcccacagccca
gcagcctcgagaccccacgagtttgtagttcagttcaacgacaattacgt
gcat
gaattcttcttttattctttttctttcctttcctttttttctttttaaac
taagtatgtgtgtgttgcctgtaagggtacatgtctgtgccacagcacgt
gtgtgtggaggttagaggacaacttgttctctccttccaccacgaggatc
ccagggattgaactatacagaaaggtgagtcttgaatttgtagcagtact
tctgagtcatcctaactgctggcaatataggtgtgaacctccatcatgag
ctattttcattttcatatcaaagtaaattgtattgattttaggaagttag
gctttgtggtgcaccttctaatgagggataataatatctagtgtgacaga
cagttaacacaaactttcaggaggaaacctccctctaagttattcagaca
tgtatttgtccattattttctgctaaaatcctaccccagaatcaaaataa
gattggcaaataattcagtgatgattggattgttgtttcagctcaaacaa
tgcctggtcatatactgggggctggggatgtgactatagaagttgagtaa
gacagtccttgtattaaatgatttgtctagagacttaagggatgcgtcag
aggacagcagtcatgacaaaaaagtagataagtgatgggagaaaaggaca
cttaacccaagtaacccagagaaaggggctataatttagtcaccccgtgg
agaagcagtttccacaagtgctaatctgcatacccattgcatacctgtgt
gcatgcacactcacaaataaaatgtgttatgcatacatgtgtggtaaatt
atggaaatatatgttatatattttaaaaattaaagaagcacctatgtttt
ttactttcaaaataaaccccactccatttctggggcttggtaataagata
tcaattgatattagaaggcctctttttttctctcttttcattgtgttgtt
tgaggcatggtctacgttattagtcaggctggccttgaacctcatgacct
cctgccttaacctcccagtggctgagattattaaccctgtcctgtctact
tttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_35391323_35392338
seq2: B6Ng01-014C18.b_46_1049

seq1  GAATTCACAGGCTATTACATCATCAGAAAGGACTATACACACTATAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGCTATTACATCATCAGAAAGGACTATACACACTATAGCAG  50

seq1  TGTCACTTAAAAATATCAACACTATCTCATGCCAGATCTTTACAGCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTAAAAATATCAACACTATCTCATGCCAGATCTTTACAGCTGTG  100

seq1  ACATGGTTTAAATTCAATAATCCATCCCCAAGAGGAGCCCACCCAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTTAAATTCAATAATCCATCCCCAAGAGGAGCCCACCCAAAGCA  150

seq1  AAAATCAAATTTATCCATCCATTATAAGATGATCCATCCGTAGACTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAATTTATCCATCCATTATAAGATGATCCATCCGTAGACTGCAT  200

seq1  CTTAACCCAATACAGTCATCATATTGTAGTTTTTAGCAGAGTTTGTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCCAATACAGTCATCATATTGTAGTTTTTAGCAGAGTTTGTTCTG  250

seq1  CGCAAAAGACGCTCCTCCTTGCAACCGCTTCTGCTATCTACCATTTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAAGACGCTCCTCCTTGCAACCGCTTCTGCTATCTACCATTTGTGC  300

seq1  ATTGGTGCTGTTGTGAGAGCTACCTCCCACTGGTGAGGCTTCATACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGCTGTTGTGAGAGCTACCTCCCACTGGTGAGGCTTCATACAGCA  350

seq1  CACAGATGGAGCCATCCTCTCCAATCCTGTAGGACACTTCATAGGGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGGAGCCATCCTCTCCAATCCTGTAGGACACTTCATAGGGGTCA  400

seq1  ACCCACAGTGTGAGTTCACTTGGGAGAAGCCTGAACAACTCTCTACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGTGTGAGTTCACTTGGGAGAAGCCTGAACAACTCTCTACTGCT  450

seq1  CAGTCCAATCTGCTGCGCAGCCTGACTGACAAGAGGATCCATCTTATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAATCTGCTGCGCAGCCTGACTGACAAGAGGATCCATCTTATGGT  500

seq1  TGATGCGAATACACCTGTAACCCGATCCCTTGCAGGGTTGCTCTGGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCGAATACACCTGTAACCCGATCCCTTGCAGGGTTGCTCTGGGAAC  550

seq1  CAGTGGTGTTTGTAGTGTTCTACCAGCAGCTCCTGCAGGCTCTGGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGTTTGTAGTGTTCTACCAGCAGCTCCTGCAGGCTCTGGCTGAA  600

seq1  GGTCTGCAGCAGCTCCTCATTCCTGAGGCCCTTGGTGCAGAGGAACTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCAGCAGCTCCTCATTCCTGAGGCCCTTGGTGCAGAGGAACTTGC  650

seq1  AGATGAAGGTTGCTGCAGCACAGATCTCACCAATCATGGTGGCTGCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGGTTGCTGCAGCACAGATCTCACCAATCATGGTGGCTGCAAGG  700

seq1  GTTAAGAAGGGGGAAGCATGGAGGTAGAAGATAGGTCAGTAGTGTGTCCC  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAAGGGGAAGCATGGAGGTAGAAGATAGGTCAGTAGTGTGTCCC  750

seq1  TGAAGGCACAACAGCCACCCACCTTTCTAGCAAGATTTGGAGGTCTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  TGAAGGCACAACAGCCACCCACCTTTCTAGCAAGATTTGGA-GTTTAGAG  799

seq1  AAAGCAAGTGTGTGAGTGAGGCAGCTATTAGCTCTAGGGGCCTTTTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGTGTGTGAGTGAGGCAGCTATTAGCTCTAGGGGCCTTTTGCAA  849

seq1  ACTTTTCTTTTAGAGGAAAATGTTACT-GTGGAGAGAAGAGACAGGAGGA  899
      |||||||||||||||| |||||||||| |||||||| ||||| |||||||
seq2  ACTTTTCTTTTAGAGG-AAATGTTACTGGTGGAGAG-AGAGAAAGGAGGA  897

seq1  AATAGCTAGCCTGGTCACATCACTTTGCCCTCCCCAGCCACCTTCCCACC  949
      ||||||||||||||||||||||||||| ||||||||| || ||||||| |
seq2  AATAGCTAGCCTGGTCACATCACTTTG-CCTCCCCAGGCA-CTTCCCA-C  944

seq1  AGCCCAGCAGCCTCCGAGGACCCCACGAGTTTGTAGTTCCAGTTCCAACA  999
      ||||||||||||| ||| |||||||||||||||||||| ||||| |||| 
seq2  AGCCCAGCAGCCT-CGA-GACCCCACGAGTTTGTAGTT-CAGTT-CAAC-  989

seq1  GACAAAATTACGTGCAT  1016
      |||  ||||||||||||
seq2  GAC--AATTACGTGCAT  1004

seq1: chrX_35558176_35559214
seq2: B6Ng01-014C18.g_67_1120 (reverse)

seq1  GAAAAGTAGACA-GACAGGCTT-ATAATCTCAGCACTTGGGAGGCTAAGG  48
      |||||||||||| |||||| || |||||||||||   ||||||| |||||
seq2  GAAAAGTAGACAGGACAGGGTTAATAATCTCAGCCACTGGGAGGTTAAGG  50

seq1  CAGGAGGGTCATGA-GTTCAAGGCCAGCCTGACT-ATAACGTGAGACCAT  96
      ||||| |||||||| ||||||||||||||||||| ||||||| |||||||
seq2  CAGGA-GGTCATGAGGTTCAAGGCCAGCCTGACTAATAACGT-AGACCAT  98

seq1  GCCTCAAACAAACAAATGAAAAGAGAGAAAAAAAGAGG-CTTCTATAATC  145
      |||||||||||   |||||||||||||||||||||||| ||||||  |||
seq2  GCCTCAAACAACACAATGAAAAGAGAGAAAAAAAGAGGCCTTCTAATATC  148

seq1  -ATTGATATTCTTATTA-CAAG-CCCAG-AATGGAGTGGGGTTTATTTTG  191
       ||||||| |||||||| |||| ||||| |||||||||||||||||||||
seq2  AATTGATA-TCTTATTACCAAGCCCCAGAAATGGAGTGGGGTTTATTTTG  197

seq1  AAAGT-AAAAACATAGATGC-TCTTTAATTTTT-AAATATAT-ACATATA  237
      ||||| |||||||||| ||| |||||||||||| |||||||| |||||||
seq2  AAAGTAAAAAACATAGGTGCTTCTTTAATTTTTAAAATATATAACATATA  247

seq1  TGTCCAT-ATTTA-CACACATGTATGCAT-ACACATTTTATTTGTGAGTG  284
      | ||||| ||||| ||||||||||||||| ||||||||||||||||||||
seq2  TTTCCATAATTTACCACACATGTATGCATAACACATTTTATTTGTGAGTG  297

seq1  TGCATGCACACAGGTATGCAATGGGTATGCAGATTAGCACTTGTGGAAAC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCACACAGGTATGCAATGGGTATGCAGATTAGCACTTGTGGAAAC  347

seq1  TGCTTCTCCACGGGGTGACTAAATTATAGCCCC-TTCTCTGGGTTACTTG  383
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCTTCTCCACGGGGTGACTAAATTATAGCCCCTTTCTCTGGGTTACTTG  397

seq1  GGTTAAGTGTCCTTTTCTCCCATCACTTATCTACTTTTTTGTCATGACTG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGTGTCCTTTTCTCCCATCACTTATCTACTTTTTTGTCATGACTG  447

seq1  CTGTCCTCTGACGCATCCCTTAAGTCTCTAGACAAATCATTTAATACAAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTGACGCATCCCTTAAGTCTCTAGACAAATCATTTAATACAAG  497

seq1  GACTGTCTTACTCAACTTCTATAGTCACATCCCCAG-CCCCAGTATATGA  532
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACTGTCTTACTCAACTTCTATAGTCACATCCCCAGCCCCCAGTATATGA  547

seq1  CCAGGCATTGTTTGAGCTGAAACAACAATCCAATCATCACTGAATTATTT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATTGTTTGAGCTGAAACAACAATCCAATCATCACTGAATTATTT  597

seq1  GCCAATCTTATTTTGATTCTGGGGTAGGATTTTAGCAGAAAATAATGGAC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCTTATTTTGATTCTGGGGTAGGATTTTAGCAGAAAATAATGGAC  647

seq1  AAATACATGTCTGAATAACTTAGAGGGAGGTTTCCTCCTGAAAGTTTGTG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATGTCTGAATAACTTAGAGGGAGGTTTCCTCCTGAAAGTTTGTG  697

seq1  TTAACTGTCTGTCACACTAGATATTATTATCCCTCATTAGAAGGTGCACC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTCTGTCACACTAGATATTATTATCCCTCATTAGAAGGTGCACC  747

seq1  ACAAAGCCTAACTTCCTAAAATCAATACAATTTACTTTGATATGAAAATG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCTAACTTCCTAAAATCAATACAATTTACTTTGATATGAAAATG  797

seq1  AAAATAGCTCATGATGGAGGTTCACACCTATATTGCCAGCAGTTAGGATG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTCATGATGGAGGTTCACACCTATATTGCCAGCAGTTAGGATG  847

seq1  ACTCAGAAGTACTGCTACAAATTCAAGACTCACCTTTCTGTATAGTTCAA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAGTACTGCTACAAATTCAAGACTCACCTTTCTGTATAGTTCAA  897

seq1  TCCCTGGGATCCTCGTGGTGGAAGGAGAGAACAAGTTGTCCTCTAACCTC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGATCCTCGTGGTGGAAGGAGAGAACAAGTTGTCCTCTAACCTC  947

seq1  CACACACACGTGCTGTGGCACAGACATGTACCCTTACAGGCAACACACAC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACGTGCTGTGGCACAGACATGTACCCTTACAGGCAACACACAC  997

seq1  ATACTTAGTTTAAAAAGAAAAAAAGGAAAGGAAAGAAAAAGAATAAAAGA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGTTTAAAAAGAAAAAAAGGAAAGGAAAGAAAAAGAATAAAAGA  1047

seq1  AGAATTC  1039
      |||||||
seq2  AGAATTC  1054