BAC Information

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BAC

Clone NameB6Ng01-014N11
ChromosomeX (Build37)
Map Location 110,762,991 - 110,938,514
singlet/doubletdoublet
Overlap geneDach2
Upstream genePof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014N11.bB6Ng01-014N11.g
ACCDH849271DH849272
length7901,030
definitionDH849271|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N11, 5' end.DH849272|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,762,991 - 110,763,782)(110,937,451 - 110,938,514)
sequence
gaattctaaaacaatttctgaataatatttcataaaaaattttcagcacc
cacaaaaagctcaaatgattgaataagattttaaattttctatacccttt
aaggtcaggttaatgatttaggctccagctttgttttattgacttttatt
tttttagatattttcttcatttatatttgaaatactatttccaaagtccc
ctataccctccccccaccctgctccccaacccacccactcctgtttcctg
gccctggccctcccctgtactggggcatacgatttgaaatttaactgagt
atttacttattctctttataagcaccatttccattacggagaactcttga
tagtcctatgaagatattagatgagaaattttgggctcatcaatcactac
ttttacactggccagtgaatataaaatttacaggatgatttacaatttaa
tcattgttattagtattttaaacttcagaagaatatcagctacaaaagca
tagaaaatatccagttatagtttttttttgttggcattaatatatttact
tgtcactgaaaaattgctcacattttcttcttatttttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttctacttcttcttcttcttctgcttcagcttctttttgttgtttcgt
ttctgatagatacttcttttgcattttttattacgtatttagctcatcac
atttccagtgttataccaaaagtcctcatatccacccacc
gaattcaatctctactgatagtgttggtcacaaatgaagggaaattattg
gaaattgctttacttttaaagaaagatatcaggtattcagtagctgtata
ttaaccaaaattattgagaagtaagtaaatgtaaaaattattcataaatg
tttttcacttataacaaacaaacaaaaacaaaacccaagttcttagcatt
attttatttccttatatgcagaccaacagagtgtcatgcatagttagtca
caatgcccttgtagtttatgtattcatttttattgttttattttatgact
agatagttcatacaccctgctgaattttacctaaaatgtaggagcttcat
ttcccatgtttgcttatttttattaagatgataatgatgtcactttttta
aatttaagaaatttgtactgtcaactctacaacactcttaacaacaaaat
atagtcatacaaaagttaactaaggtataaacatgcaaaaggagaactct
ccctgcgatcataaaacgatgttattttctgttcagcagttcatgttact
gctgttcatgctaattaattaaaggagctgttgcagtaatgtgcaaacag
ggaatctgagaaactgagagggcttttaggtctccaagtgaagttaagtc
aatctgggcatgggcaatcaaatgtaatgaaatcacttgtcagtgctaag
cttgcaaaaactgtgaagtttgactggggagtaaaaggattataattaga
tttccaataggataataactaaatggcagaatgcagtaagagaaaatatt
actttgttagctaatggactgctgttcggtttagttttatcagcttactt
gtagtgtgctaatttaatttgcttttatcagcaaaatgtacacacaatgc
acttaaagtcattgcaaaatcattgatctgaagtacactatgacactgta
tgttatttatggaagcaagatgctgatagatgtgatttgctgtctgcagt
cccagctgagtagagaatttgatgaccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_110762991_110763782
seq2: B6Ng01-014N11.b_46_835

seq1  GAATTCTAAAACAATTTCTGAATAATATTTCATAAAAAATTTTCAGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAACAATTTCTGAATAATATTTCATAAAAAATTTTCAGCACC  50

seq1  CACAAAAAGCTCAAATGATTGAATAAGATTTTAAATTTTCTATACCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAGCTCAAATGATTGAATAAGATTTTAAATTTTCTATACCCTTT  100

seq1  AAGGTCAGGTTAATGATTTAGGCTCCAGCTTTGTTTTATTGACTTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGGTTAATGATTTAGGCTCCAGCTTTGTTTTATTGACTTTTATT  150

seq1  TTTTTAGATATTTTCTTCATTTATATTTGAAATACTATTTCCAAAGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGATATTTTCTTCATTTATATTTGAAATACTATTTCCAAAGTCCC  200

seq1  CTATACCCTCCCCCCACCCTGCTCCCCAACCCACCCACTCCTGTTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCCTCCCCCCACCCTGCTCCCCAACCCACCCACTCCTGTTTCCTG  250

seq1  GCCCTGGCCCTCCCCTGTACTGGGGCATACGATTTGAAATTTAACTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCCCTCCCCTGTACTGGGGCATACGATTTGAAATTTAACTGAGT  300

seq1  ATTTACTTATTCTCTTTATAAGCACCATTTCCATTACGGAGAACTCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTATTCTCTTTATAAGCACCATTTCCATTACGGAGAACTCTTGA  350

seq1  TAGTCCTATGAAGATATTAGATGAGAAATTTTGGGCTCATCAATCACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTATGAAGATATTAGATGAGAAATTTTGGGCTCATCAATCACTAC  400

seq1  TTTTACACTGGCCAGTGAATATAAAATTTACAGGATGATTTACAATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACTGGCCAGTGAATATAAAATTTACAGGATGATTTACAATTTAA  450

seq1  TCATTGTTATTAGTATTTTAAACTTCAGAAGAATATCAGCTACAAAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTATTAGTATTTTAAACTTCAGAAGAATATCAGCTACAAAAGCA  500

seq1  TAGAAAATATCCAGTTATAGTTTTTTTTTGTTGGCATTAATATATTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATATCCAGTTATAGTTTTTTTTTGTTGGCATTAATATATTTACT  550

seq1  TGTCACTGAAAAATTGCTCACATTTTCTTCTTATTTTTCTTCTTCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGAAAAATTGCTCACATTTTCTTCTTATTTTTCTTCTTCTTCTT  600

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  650

seq1  TCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTGTTTTTTCTT  700
      |||||||||||||||||||||||| ||||  |||||||||||| |||| |
seq2  TCTTCTACTTCTTCTTCTTCTTCTGCTTCAGCTTCTTTTTGTTGTTTCGT  700

seq1  TTTTTATATATATTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTA  750
      || | ||| ||| || |||| |||||||||||| |||||||||||| | |
seq2  TTCTGATAGATACTTCTTTTGCATTTTTTATTACGTATTTAGCTCA-TCA  749

seq1  CATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACC  792
      |||||||| || |||||||||||| || ||||||||||||||
seq2  CATTTCCAGTGTTATACCAAAAGT-CCTCATATCCACCCACC  790

seq1: chrX_110937451_110938514
seq2: B6Ng01-014N11.g_68_1097 (reverse)

seq1  TGTGGTCCAATTCAAATTCCTCTAACTCAGCTGGGGACCTGCAAGACAGC  50
      |||||||    ||||||| |||| |||||||||||   |||| |||||||
seq2  TGTGGTC---ATCAAATT-CTCT-ACTCAGCTGGG--ACTGC-AGACAGC  42

seq1  ACATCAACCATCTTATCAGCCAATCTCTGCTTCCCATAAAATAAACATAC  100
      | ||||  |||| |||||||  |||| ||||| |||||||   |||||||
seq2  AAATCA--CATC-TATCAGC--ATCT-TGCTT-CCATAAA--TAACATAC  83

seq1  CAGGTGTCATTAAGTGTACCTTCAGATCAATGATTTTTGCAAATGACCTT  150
         |||||||  |||||| |||||||||||||| |||||| ||||| |||
seq2  --AGTGTCAT--AGTGTA-CTTCAGATCAATGA-TTTTGC-AATGA-CTT  125

seq1  TAAGTGGCATTTGTGTGGTACATTTTTGCTGATAAAAGCAAATTAAATTA  200
      ||||| ||| |||||| ||||| |||||||||||||||||||||||||||
seq2  TAAGT-GCA-TTGTGT-GTACA-TTTTGCTGATAAAAGCAAATTAAATTA  171

seq1  GCACAACTACAAGTAAGCTGATAAAAACTAAAACCGAACAGCAGTCCCAT  250
      |||| ||||||||||||||||| |||||| ||||||||||||||| ||||
seq2  GCAC-ACTACAAGTAAGCTGAT-AAAACT-AAACCGAACAGCAGT-CCAT  217

seq1  TAGCTAACAAAGTAATATTTTCTCTTTACTGCATTCTGCCATTTAGTTAT  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGCTAACAAAGTAATATTTTCTC-TTACTGCATTCTGCCATTTAGTTAT  266

seq1  TATCCTATTGGAAATCTAATTATAATCCTTTTACTCCCCAGTCAAACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTATTGGAAATCTAATTATAATCCTTTTACTCCCCAGTCAAACTTC  316

seq1  ACAGTTTTTGCAAGCTTAGCACTGACAAGTGATTTCATTACATTTGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTTGCAAGCTTAGCACTGACAAGTGATTTCATTACATTTGATTG  366

seq1  CCCATGCCCAGATTGACTTAACTTCACTTGGAGACCTAAAAGCCCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCCAGATTGACTTAACTTCACTTGGAGACCTAAAAGCCCTCTCA  416

seq1  GTTTCTCAGATTCCCTGTTTGCACATTACTGCAACAGCTCCTTTAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAGATTCCCTGTTTGCACATTACTGCAACAGCTCCTTTAATTAA  466

seq1  TTAGCATGAACAGCAGTAACATGAACTGCTGAACAGAAAATAACATCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGAACAGCAGTAACATGAACTGCTGAACAGAAAATAACATCGTT  516

seq1  TTATGATCGCAGGGAGAGTTCTCCTTTTGCATGTTTATACCTTAGTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATCGCAGGGAGAGTTCTCCTTTTGCATGTTTATACCTTAGTTAAC  566

seq1  TTTTGTATGACTATATTTTGTTGTTAAGAGTGTTGTAGAGTTGACAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGACTATATTTTGTTGTTAAGAGTGTTGTAGAGTTGACAGTAC  616

seq1  AAATTTCTTAAATTTAAAAAAGTGACATCATTATCATCTTAATAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTAAATTTAAAAAAGTGACATCATTATCATCTTAATAAAAATA  666

seq1  AGCAAACATGGGAAATGAAGCTCCTACATTTTAGGTAAAATTCAGCAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACATGGGAAATGAAGCTCCTACATTTTAGGTAAAATTCAGCAGGG  716

seq1  TGTATGAACTATCTAGTCATAAAATAAAACAATAAAAATGAATACATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAACTATCTAGTCATAAAATAAAACAATAAAAATGAATACATAAA  766

seq1  CTACAAGGGCATTGTGACTAACTATGCATGACACTCTGTTGGTCTGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGGCATTGTGACTAACTATGCATGACACTCTGTTGGTCTGCATA  816

seq1  TAAGGAAATAAAATAATGCTAAGAACTTGGGTTTTGTTTTTGTTTGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAATAAAATAATGCTAAGAACTTGGGTTTTGTTTTTGTTTGTTTG  866

seq1  TTATAAGTGAAAAACATTTATGAATAATTTTTACATTTACTTACTTCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTGAAAAACATTTATGAATAATTTTTACATTTACTTACTTCTCA  916

seq1  ATAATTTTGGTTAATATACAGCTACTGAATACCTGATATCTTTCTTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTGGTTAATATACAGCTACTGAATACCTGATATCTTTCTTTAAA  966

seq1  AGTAAAGCAATTTCCAATAATTTCCCTTCATTTGTGACCAACACTATCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCAATTTCCAATAATTTCCCTTCATTTGTGACCAACACTATCAG  1016

seq1  TAGAGATTGAATTC  1064
      ||||||||||||||
seq2  TAGAGATTGAATTC  1030