BAC Information

Click to search

BAC

Clone NameB6Ng01-015L13
Chromosome2 (Build37)X (Build37)
Map Location 82,926,718 - 82,927,401104,371,961 - 104,372,913
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
Downstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015L13.bB6Ng01-015L13.g
ACCDH849901DH849902
length9161,026
definitionDH849901|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L13, 5' end.DH849902|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,926,718 - 82,927,401)(104,371,961 - 104,372,913)
sequence
gaattcctcaacctggagtggcctaggcagttgatggggtcgtatttcat
caatggcaatgggtagcatatgagaatgtaaagcattggacttcagttta
gcttgagttttgtaagtcgagcctctggggctttcatggctattctttat
taaaactgtacatgtggagatgaatatgatggttcacacatgtaatttct
ttttttaaaatagataaataagtttatttaaaaaggtcttttgctaatac
aatccactacaatcttataaatcataaagtatctgaaaacatatttattt
tgaattaattcagtataatacacactcgaacacacactatgattttacaa
tacagttaactaatattctgtagttaattgaaaaagttattcagattaga
aaatactttaaataaacactttcatatctttctttatatatatatttttt
aaacaggtattttcctcctttacatttccaatgctatcctaaaagtcccc
catatccccccacttccctacccacccactcccatcttttggccctggca
ttcccctgtactggggcatataaagtttgcaagtccaatgggcctctctt
tccagtgatggctgactaggccatcttttgatacttatgcagctagagtc
aagagctctggggtactggttagttcataatgttgttccacctatagggt
tgcagatccctttagctccttgggtactttctctagctcctccattgggg
ggtcctgtgatccatccaatagctgactgtgagcatccacttctgtgttt
gctaagccctggcatagtctcacaagaaacagctctatctgggtcctttc
agcaaaatcttgctagtgtaatgcaatggtgtcagcatttgggaagctga
ttatgggatggatccc
gaattctttgtttaactctgtgccccattttttaatgaggttatttgatt
atctggattccagcttcttgagttctttgtatatattggatattagtccc
ctatcagatttaggattggtaaaaatcctttcccaatctgttggtagcct
ttttgtgttattgacagtgtcttttgccttacagaagctatgcaatttaa
tgaggtcccatttgtcgattctagatcttacagcacaagccatttctgtt
ctgttcaggaatatttcccctgtgcccatatcttcgaggcttttccccca
ttttctcctctataagtttcagagtctctggttttatgtggagttccttg
atcctctaagacttgagctttgtacaaggagataagaatggatcgattcg
catttgtctacacgataaccgccagttaagctagcaccatttgttgaaaa
agctgtctttttttccactagatggctttagctcttttgtcaaagatcaa
gttaccatagttgtgtggtttcatttctgggtcttcaattctgttccatt
gatctacctaagacagcattttctatataggaaaatggagtgataaacaa
tatccatatatcaacattttaaagaaaggtcactttgagatcttcagtgt
gtcacaattccttttttggggtttagtttctttccttttacaatgtttta
tttttatttgtattattttcttcttttccacttccaaaacactctcacat
atccatatgcttttcctcattgttgcatatattacatatatgcatgtgcc
cataaacatttaagttacaaatctttcacagtctgtttttttatatgtag
attttcaggaatgacaatttggtatagtattatatcattcttttcttctg
ttttcactccttccaaccccctcccatgtcagccctccatttcgtttata
attcaatatttctcttttctttattatggttatcacaaagaaaaaaatat
acaaataatataataaatatgatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82926718_82927401
seq2: B6Ng01-015L13.b_470_817

seq1  TCTTTCTTTATATATCTTCTCCTATTTCTCTCTTACACTCTCTCCCATTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCCAGTAAAAATTACATTTTAGAAATCTACTGGAAAGAATTCTAGAATCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAAGCTTTCATTCCAATCAGCAATTTCATTCCAATTGAATAGACCCAAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATATTATTGTAATTATATATGATTTTACAATACACTGAAAATATTTGCCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGGTTGAGAAATGCTTTTCAGTAGTTCCTCAGACATTGCATTTTTCAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  CATTTCCATTCAAGAATGATGTTTATTAAAGGTATAACGTAGTGTTAAAA  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTTACTTCTGTTTTTTGTTTAATAAATGTACTTGATTATTTTTTTTCC  350
                   | ||| ||||               ||| | | ||  
seq2  -------------TCTTTCTTTA---------------TATATATATT--  20

seq1  ATTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAG  400
       |||| |  ||||||||  ||| ||||||||||||||||||| | |||||
seq2  -TTTTAAACAGGTATTTTCCTCCTTTACATTTCCAATGCTATCCTAAAAG  69

seq1  TCCCCCATACCCACCCACCCCCACTCCCCTACCCATCCACTCCCCCTTTT  450
      ||||||||| |      |||||||| ||||||||| ||||||||   |||
seq2  TCCCCCATATC------CCCCCACTTCCCTACCCACCCACTCCCATCTTT  113

seq1  TGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  163

seq1  GGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG  550
      |||||||||||| |||||||||| ||||||||||||||||||||| ||||
seq2  GGGCCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTTTTGATACTTATG  213

seq1  CAGCTAGAGACAAGAGCTCCGGGATACTGCTTAGTTCATATTGTTGTTCC  600
      ||||||||| ||||||||| ||| ||||| |||||||||| |||||||||
seq2  CAGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTCC  263

seq1  ACCTATAGGGTTGCAATTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTTC  650
      |||||||||||||||  ||||||||| ||||||||| |||||||||| ||
seq2  ACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTC  313

seq1  CTCCATT-GGGGGCCCTGTGATCCATTCAATAGCT  684
      ||||||| ||||| |||||||||||| ||||||||
seq2  CTCCATTGGGGGGTCCTGTGATCCATCCAATAGCT  348

seq1: chrX_104371961_104372913
seq2: B6Ng01-015L13.g_129_1091

seq1  GCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCCCTATCAGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCCCTATCAGATTTA  50

seq1  GGATTGGTAAAAATCCTTTCCCAATCTGTTGGTAGCCTTTTTGTGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGTAAAAATCCTTTCCCAATCTGTTGGTAGCCTTTTTGTGTTATT  100

seq1  GACAGTGTCTTTTGCCTTACAGAAGCTATGCAATTTAATGAGGTCCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTCTTTTGCCTTACAGAAGCTATGCAATTTAATGAGGTCCCATT  150

seq1  TGTCGATTCTAGATCTTACAGCACAAGCCATTTCTGTTCTGTTCAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGATTCTAGATCTTACAGCACAAGCCATTTCTGTTCTGTTCAGGAAT  200

seq1  ATTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCCATTTTCTCCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCCATTTTCTCCTCTA  250

seq1  TAAGTTTCAGAGTCTCTGGTTTTATGTGGAGTTCCTTGATCCTCTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCAGAGTCTCTGGTTTTATGTGGAGTTCCTTGATCCTCTAAGAC  300

seq1  TTGAGCTTTGTACAAGGAGATAAGAATGGATCGATTCGCATTTGTCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTTGTACAAGGAGATAAGAATGGATCGATTCGCATTTGTCTACA  350

seq1  CGATAACCGCCAGTTAAGCTAGCACCATTTGTTGAAAAAGCTGTCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAACCGCCAGTTAAGCTAGCACCATTTGTTGAAAAAGCTGTCTTTTT  400

seq1  TTCCACTAGATGGCTTTAGCTCTTTTGTCAAAGATCAAGTTACCATAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTAGATGGCTTTAGCTCTTTTGTCAAAGATCAAGTTACCATAGTT  450

seq1  GTGTGGTTTCATTTCTGGGTCTTCAATTCTGTTCCATTGATCTACCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTTCATTTCTGGGTCTTCAATTCTGTTCCATTGATCTACCTAAG  500

seq1  ACAGCATTTTCTATATAGGAAAATGGAGTGATAAACAATATCCATATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTTTCTATATAGGAAAATGGAGTGATAAACAATATCCATATATC  550

seq1  AACATTTTAAAGAAAGGTCACTTTGAGATCTTCAGTGTGTCACAATTCC-  599
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACATTTTAAAGAAAGGTCACTTTGAGATCTTCAGTGTGTCACAATTCCT  600

seq1  TTTTTGGGGTTTAGTTTC-TTCCTTTTACAATGTTTTATTTTTATTTGTA  648
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTTGGGGTTTAGTTTCTTTCCTTTTACAATGTTTTATTTTTATTTGTA  650

seq1  TTA-TTTCTTCTTTTCCACTTCCAAAACACTCTCACATATCCATATGC-T  696
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTATTTTCTTCTTTTCCACTTCCAAAACACTCTCACATATCCATATGCTT  700

seq1  TTCCTCATTGTTGCATATATTACATATATGCATGTGCCCATAAACA-TTA  745
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCCTCATTGTTGCATATATTACATATATGCATGTGCCCATAAACATTTA  750

seq1  AG-TAC-AATC-TTCACAGTCTG-TTTTTTATATGTAGATTTTCAGGAAT  791
      || ||| |||| ||||||||||| ||||||||||||||||||||||||||
seq2  AGTTACAAATCTTTCACAGTCTGTTTTTTTATATGTAGATTTTCAGGAAT  800

seq1  GAC-ATTTGGTATAGTATTATATCATTC-TTTCTTCTGTTTCCACTCCTT  839
      ||| |||||||||||||||||||||||| |||||||||||| ||||||||
seq2  GACAATTTGGTATAGTATTATATCATTCTTTTCTTCTGTTTTCACTCCTT  850

seq1  CCAACCCCCTCCCATGTCAGTCCTCCCATTTCGTTTATAATTC-ATATTC  888
      |||||||||||||||||||| ||| |||||||||||||||||| ||||| 
seq2  CCAACCCCCTCCCATGTCAGCCCT-CCATTTCGTTTATAATTCAATATTT  899

seq1  TTCTTTTCTTTATTATTGTTATACACAAAGAAAGATATATACAAATAAAT  938
       ||||||||||||||| ||||| |||||||||| | |||||||||| |||
seq2  CTCTTTTCTTTATTATGGTTAT-CACAAAGAAAAAAATATACAAAT-AAT  947

seq1  AT-ATAAATATGATTT  953
      || |||||||||||||
seq2  ATAATAAATATGATTT  963