BAC Information

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BAC

Clone NameB6Ng01-018E21
ChromosomeX (Build37)
Map Location 39,369,022 - 39,510,125
singlet/doubletdoublet
Overlap geneBirc4, Stag2
Upstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838
Downstream geneLOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018E21.bB6Ng01-018E21.g
ACCDH851744DH851745
length1,128312
definitionDH851744|Mus musculus domesticus DNA, BAC clone: B6Ng01-018E21, 5' end.DH851745|Mus musculus domesticus DNA, BAC clone: B6Ng01-018E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,508,984 - 39,510,125)(39,369,022 - 39,369,333)
sequence
gaattcacttatttaggatagtatgtgtctgagtgttttgtcttcatgga
tatacatgtagcacacgcatgtccagtgccctcagaggtcaggtgtcaga
atccctggttatagacggtggtgaagcatcatgagtgttggaaagccaac
ctgggtccttagcaagaacagtggttattctacgccatttcttctgccac
caatcctaaatgtgatctaaccacttgatgagctgaacaactcataaaca
acccttagacaaatataacataacaaaatttttttaaatgtctaactatt
ctatgtaccatagaaatctctcttcacatcaagacttcaatattccagga
attttagtaatcacactcaagcagtattaaaattcagagtttaactactt
tgaatactagcttaaaatatattgtttttgtttttttacctttaccaaca
ggtatggtatggtacatgagccaacctgatctacatacaaattccaggcc
agccagaactacaaaaaccctgtctcaaaaaaacaaaacaaaaaaagcaa
agacaaaaaacattttaacctttatttgggagtggggaggagcatatggg
gcatgccacagtgcgtatatacaaattcagagggcaacttgcaaggatca
attacctccttccaccatgccagctacagaggcagaacacaggccagcag
ccttaggagcaagttgtccccacccacagccatctaaatggctccaatat
aagaattctatcttataacaactcacctgactctgaacaaagatctgtta
ttgtatcttgtattacatatggaatatgtaatcttataaaattaaaacaa
tgaggattgtagacctaaagtccctaagagaaacatctgagtttaaggag
cacagaaaacattaagaatttgaggtcacgccaatcaagtgatttgggga
gtcactatcacctagaacttcaactggctcatctgtaaactagtgtgtaa
acacagatcctagcctgatggtgatgtatacgcctttaatcccactctct
ggaaacagaagcctacgatctctgagttgagggtagctgctacaagttca
ggacagccagggctacaaagaaaccctg
tcttttttagctgggtttcactcttggtctcccaaacttacctcacacac
tcatgagaggtccttttgccttggtcacccaactgctggaattataggtg
tgagagaccacattaggctttgaatagacctttacatttacaggaagaat
gctagaagaaaaatagtaagaaggattcttatataccaattacagaggtt
ctacttcttagtaattctttaccctgggtgctttatcatttctgtgtttg
ttctctctttccttttaaaattaaattgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_39508984_39510125
seq2: B6Ng01-018E21.b_45_1172 (reverse)

seq1  CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTTGTAGACCAGGC  50
      |||||||  ||| |||||||||||||||||| |||| ||||||  || ||
seq2  CAGGGTT--TCTTTGTAGCCCTGGCTGTCCT-GAAC-TTGTAG--CA-GC  43

seq1  TACCCTCCAAACTCAGAGATCTGTAGGCCTCTGTCTCCAGAGAGCTGGGA  100
      |||||||  |||||||||||| |||||| ||||| ||||||||| |||||
seq2  TACCCTC--AACTCAGAGATC-GTAGGCTTCTGTTTCCAGAGAG-TGGGA  89

seq1  TTAAAGGCGTATACAATCACCATCAGGCTAAGATCTGTGTTTTACACACT  150
      |||||||||||||| ||||||||||||||| |||||||| ||||||||||
seq2  TTAAAGGCGTATAC-ATCACCATCAGGCTAGGATCTGTG-TTTACACACT  137

seq1  AGTTTACAGATGAGGCAGTTGAAGTTCTAGGTGATAGTGACTCCCCAAAT  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTTTACAGATGAGCCAGTTGAAGTTCTAGGTGATAGTGACTCCCCAAAT  187

seq1  CACCTTGATTGGCGTGACCTCAAATTCTTAATGTTTTCTGTGCTCCTTAA  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CTTGATTGGCGTGACCTCAAATTCTTAATGTTTTCTGTGCTCCTTAA  236

seq1  ACTCAGATGTTTCTCTTAGGGACTTTAGGTCTACAATCCTCATTGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGATGTTTCTCTTAGGGACTTTAGGTCTACAATCCTCATTGTTTTA  286

seq1  ATTTTATAAGATTACATATTCCATATGTAATACAAGATACAATAACAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAAGATTACATATTCCATATGTAATACAAGATACAATAACAGAT  336

seq1  CTTTGTTCAGAGTCAGGTGAGTTGTTATAAGATAGAATTCTTATATTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCAGAGTCAGGTGAGTTGTTATAAGATAGAATTCTTATATTGGA  386

seq1  GCCATTTAGATGGCTGTGGGTGGGGACAACTTGCTCCTAAGGCTGCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTAGATGGCTGTGGGTGGGGACAACTTGCTCCTAAGGCTGCTGGC  436

seq1  CTGTGTTCTGCCTCTGTAGCTGGCATGGTGGAAGGAGGTAATTGATCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCTGCCTCTGTAGCTGGCATGGTGGAAGGAGGTAATTGATCCTT  486

seq1  GCAAGTTGCCCTCTGAATTTGTATATACGCACTGTGGCATGCCCCATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGCCCTCTGAATTTGTATATACGCACTGTGGCATGCCCCATATG  536

seq1  CTCCTCCCCACTCCCAAATAAAGGTTAAAATGTTTTTTGTCTTTGCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCACTCCCAAATAAAGGTTAAAATGTTTTTTGTCTTTGCTTTT  586

seq1  TTTGTTTTGTTTTTTTGAGACAGGGTTTTTGTAGTTCTGGCTGGCCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTTTTGAGACAGGGTTTTTGTAGTTCTGGCTGGCCTGGA  636

seq1  ATTTGTATGTAGATCAGGTTGGCTCATGTACCATACCATACCTGTTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATGTAGATCAGGTTGGCTCATGTACCATACCATACCTGTTGGTA  686

seq1  AAGGTAAAAAAACAAAAACAATATATTTTAAGCTAGTATTCAAAGTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAAAAACAAAAACAATATATTTTAAGCTAGTATTCAAAGTAGTT  736

seq1  AAACTCTGAATTTTAATACTGCTTGAGTGTGATTACTAAAATTCCTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGAATTTTAATACTGCTTGAGTGTGATTACTAAAATTCCTGGAA  786

seq1  TATTGAAGTCTTGATGTGAAGAGAGATTTCTATGGTACATAGAATAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGTCTTGATGTGAAGAGAGATTTCTATGGTACATAGAATAGTTA  836

seq1  GACATTTAAAAAAATTTTGTTATGTTATATTTGTCTAAGGGTTGTTTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTAAAAAAATTTTGTTATGTTATATTTGTCTAAGGGTTGTTTATG  886

seq1  AGTTGTTCAGCTCATCAAGTGGTTAGATCACATTTAGGATTGGTGGCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTCAGCTCATCAAGTGGTTAGATCACATTTAGGATTGGTGGCAGA  936

seq1  AGAAATGGCGTAGAATAACCACTGTTCTTGCTAAGGACCCAGGTTGGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGCGTAGAATAACCACTGTTCTTGCTAAGGACCCAGGTTGGCTT  986

seq1  TCCAACACTCATGATGCTTCACCACCGTCTATAACCAGGGATTCTGACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACACTCATGATGCTTCACCACCGTCTATAACCAGGGATTCTGACAC  1036

seq1  CTGACCTCTGAGGGCACTGGACATGCGTGTGCTACATGTATATCCATGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTGAGGGCACTGGACATGCGTGTGCTACATGTATATCCATGAA  1086

seq1  GACAAAACACTCAGACACATACTATCCTAAATAAGTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACACTCAGACACATACTATCCTAAATAAGTGAATTC  1128

seq1: chrX_39369022_39369333
seq2: B6Ng01-018E21.g_72_383

seq1  TCTTTTTTAGCTGGGTTTCACTCTTGGTCTCCCAAACTTACCTCACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAGCTGGGTTTCACTCTTGGTCTCCCAAACTTACCTCACACAC  50

seq1  TCATGAGAGGTCCTTTTGCCTTGGTCACCCAACTGCTGGAATTATAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAGGTCCTTTTGCCTTGGTCACCCAACTGCTGGAATTATAGGTG  100

seq1  TGAGAGACCACATTAGGCTTTGAATAGACCTTTACATTTACAGGAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACCACATTAGGCTTTGAATAGACCTTTACATTTACAGGAAGAAT  150

seq1  GCTAGAAGAAAAATAGTAAGAAGGATTCTTATATACCAATTACAGAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGAAAAATAGTAAGAAGGATTCTTATATACCAATTACAGAGGTT  200

seq1  CTACTTCTTAGTAATTCTTTACCCTGGGTGCTTTATCATTTCTGTGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTTAGTAATTCTTTACCCTGGGTGCTTTATCATTTCTGTGTTTG  250

seq1  TTCTCTCTTTCCTTTTAAAATTAAATTGTGTGTGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTTCCTTTTAAAATTAAATTGTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTGTGTGTGTG  312
      ||||||||||||
seq2  TGTGTGTGTGTG  312