BAC Information

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BAC

Clone NameB6Ng01-019L05
ChromosomeX (Build37)
Map Location 48,973,851 - 49,117,242
singlet/doubletdoublet
Overlap geneHs6st2, Usp26
Upstream gene2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356
Downstream geneLOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3, Kis2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019L05.bB6Ng01-019L05.g
ACCDH852714DH852715
length1,1751,022
definitionDH852714|Mus musculus domesticus DNA, BAC clone: B6Ng01-019L05, 5' end.DH852715|Mus musculus domesticus DNA, BAC clone: B6Ng01-019L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,973,851 - 48,975,040)(49,116,212 - 49,117,242)
sequence
gaattccatgcctacaaacatcctggtcaaaccagggaaaaggtcgagac
aggacaggaggagattaatacgaagacaagaatatgctggagttacagtt
cagtagagcacttggacaggttccacaaagccctgagtataattcctttg
ctcttccaagggaaagggaatttataaggaggcaagacagaaaagaaatc
ttatatacacaggagaatcgatacaataaatggctggggttttgtctata
tcaatggagacaataggcagcagaataacattcaaatcattgggaaacaa
gactggtcaaccaagaattctccatgcagagtgaaataaaaaatcagagt
attctcagacaactaatgacagataatttgccacaggcagaagagataat
aaacattttatatgtaaaataccaaaaaagtgttctaagaaattaataat
gagaatacaagtgaactataagtgaacaaaatatttgaatactcatttca
atgtagatatcttaatagcttctcaatgcatgatatccagttgccattgg
acaaggaattaaattaagaaaaacaatgagaggccattggctgaagagac
catggcagatgataactagcttggttggtatgtgatgaactagaacatgt
gaaagtaattactgttgaaaagttaaatggtaccgctactcgggaaaaga
ttcaggcatcttcttaaattaacaatatacacattccaaataacatagta
atctactcctagatgtaaatgtagggtaaatgaagatacatgtccaagca
aagaaatatacagcagcattcacagcagcactatctacaaccagtaaaac
atttactcgctgataatgaataaactagctgtagtatatccatatggtag
aatattatttaatcataaaaataaaaatactgatacatgctataacacct
gtaaattcaaaatcatgacatgtgaaaaagcaatccatttcatcaggaaa
ttttatcatatcacagaaaagaaactagacatgggacaaaattctaatca
ctgtcgatttcctacccaaatgatacaatatttattcaaagaattgtttc
ataattagaattcatgcttaatatggtttggaatcaaaaattgcttctat
gacacctacattcattgctgaaaaa
gaattcttcctattttggtcaggacctcctatagagtgatttatgtgcag
tttatgtcaagaggcgaagtaatggcatttctctgctatacaatgatttg
gatgtgtgctgagtgtggaaatgcacctttaagccagacaggcaaggaga
aaatctgtcttgatccaatcgttttgaaaagccaggcacactgatactgg
aaacgaacagaatgactggatttaattgctaatgctctagaggcagtgca
gtgttgacctttaacccaaacttgaagggtagaaaaaaggagagggtggt
ttcttctttcctttcatcagatctcaacttgcctaccccttatacctgat
cctgcctgctttcaacccaatccacatacacgtaacattcagctttgtcc
tcctttcttattgcttgcttccagcttaggggcaagttgagaatgaatag
aaaacagaaaaacaaaaaggaagaggaaaggacaataggagaaggaacta
ttttaacttgttgacagctgcttagacgcaggagacagaattacagctac
taaaataagagcgactctgtcaactgatgttacaactatagcctcggaat
tatggagcatatccctatatgtattttaatattttattatgtttcatgtg
tttttgtgtatatgtgatcatgtgagcacatggatgtcattgcacatatg
gtggtcaggacaattctaggtaatcagtgctctccttacaccatttgggt
tgggagactgaactcagattgtaaagcatggcagcaagtccccatggact
cgttagcaactgagccatgccccaggctcacattttcctctattttatcc
tctgtcctcgtgttacttttctcttcaaagatttaatttatttttcgttt
tgtgaagtgatgtatctaggtttatgtacattaagtgcagttatcccaat
tgccgaaataatagcatctaatcctggagctacctgatatgaggctgaaa
acaaccgggtccttttcccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_48973851_48975040
seq2: B6Ng01-019L05.b_45_1219

seq1  GAATTCCATGCCTACAAACATCCTGGTCAAACCAGGGAAAAGGTCGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCTACAAACATCCTGGTCAAACCAGGGAAAAGGTCGAGAC  50

seq1  AGGACAGGAGGAGATTAATACGAAGACAAGAATATGCTGGAGTTACAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGAGGAGATTAATACGAAGACAAGAATATGCTGGAGTTACAGTT  100

seq1  CAGTAGAGCACTTGGACAGGTTCCACAAAGCCCTGAGTATAATTCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGCACTTGGACAGGTTCCACAAAGCCCTGAGTATAATTCCTTTG  150

seq1  CTCTTCCAAGGGAAAGGGAATTTATAAGGAGGCAAGACAGAAAAGAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAAGGGAAAGGGAATTTATAAGGAGGCAAGACAGAAAAGAAATC  200

seq1  TTATATACACAGGAGAATCGATACAATAAATGGCTGGGGTTTTGTCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACACAGGAGAATCGATACAATAAATGGCTGGGGTTTTGTCTATA  250

seq1  TCAATGGAGACAATAGGCAGCAGAATAACATTCAAATCATTGGGAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAGACAATAGGCAGCAGAATAACATTCAAATCATTGGGAAACAA  300

seq1  GACTGGTCAACCAAGAATTCTCCATGCAGAGTGAAATAAAAAATCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTCAACCAAGAATTCTCCATGCAGAGTGAAATAAAAAATCAGAGT  350

seq1  ATTCTCAGACAACTAATGACAGATAATTTGCCACAGGCAGAAGAGATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGACAACTAATGACAGATAATTTGCCACAGGCAGAAGAGATAAT  400

seq1  AAACATTTTATATGTAAAATACCAAAAAAGTGTTCTAAGAAATTAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTATATGTAAAATACCAAAAAAGTGTTCTAAGAAATTAATAAT  450

seq1  GAGAATACAAGTGAACTATAAGTGAACAAAATATTTGAATACTCATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACAAGTGAACTATAAGTGAACAAAATATTTGAATACTCATTTCA  500

seq1  ATGTAGATATCTTAATAGCTTCTCAATGCATGATATCCAGTTGCCATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATATCTTAATAGCTTCTCAATGCATGATATCCAGTTGCCATTGG  550

seq1  ACAAGGAATTAAATTAAGAAAAACAATGAGAGGCCATTGGCTGAAGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAATTAAATTAAGAAAAACAATGAGAGGCCATTGGCTGAAGAGAC  600

seq1  CATGGCAGATGATAACTAGCTTGGTTGGTATGTGATGAACTAGAACATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGATGATAACTAGCTTGGTTGGTATGTGATGAACTAGAACATGT  650

seq1  GAAAGTAATTACTGTTGAAAAGTTAAATGGTACCGCTACTCGGGAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAATTACTGTTGAAAAGTTAAATGGTACCGCTACTCGGGAAAAGA  700

seq1  TTCAGGCATCTTCTTAAATTAACAATATACACATTCCAAATAACATAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCATCTTCTTAAATTAACAATATACACATTCCAAATAACATAGTA  750

seq1  ATCTACTCCTAGATGTAAATGTAGGGTAAATGAAGATACATGTCCAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTCCTAGATGTAAATGTAGGGTAAATGAAGATACATGTCCAAGCA  800

seq1  AAGAAATATACAGCAGCATTCACAGCAGCACTATCTACAACCAGTAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATACAGCAGCATTCACAGCAGCACTATCTACAACCAGTAAAAC  850

seq1  ATTTACTCGCTGATAATGAATAAACTAGCTGTAGTATATCCATATGGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTCGCTGATAATGAATAAACTAGCTGTAGTATATCCATATGGTAG  900

seq1  AATATTATTTAATCATAAAAATAAAAATACTGATACATGCTATAACACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTAATCATAAAAATAAAAATACTGATACATGCTATAACACCT  950

seq1  GTAAAATTCAAAATCATGACATGTGAAAAAGCAATCCATTTCATCAGGGA  1000
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GT-AAATTCAAAATCATGACATGTGAAAAAGCAATCCATTTCATCA-GGA  998

seq1  AATTTTATCATATCAACAGAAAAGAAACTAGACCATGGGACAAAATTCTA  1050
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  AATTTTATCATATC-ACAGAAAAGAAACTAGA-CATGGGACAAAATTCTA  1046

seq1  ATCACCTGTCGAATTTCCTTACCCAAATTGATACAATATTTA-TCAAAAG  1099
      |||| |||||| |||||| |||||||| |||||||||||||| |||||  
seq2  ATCA-CTGTCG-ATTTCC-TACCCAAA-TGATACAATATTTATTCAAAGA  1092

seq1  AGTGTTTCATAAATTAGAAATTCATGCTTAATATGGTTGTGAAAATCAAA  1149
      | |||||||| |||||| ||||||||||||||||||||  |  ||||   
seq2  ATTGTTTCAT-AATTAG-AATTCATGCTTAATATGGTTTGG--AATC---  1135

seq1  AAAAAATTGTCTTCTATGACATC-AC-TTCATTGCTTTAAAAA  1190
       |||||||| ||||||||||| | || |||||||||  |||| 
seq2  -AAAAATTG-CTTCTATGACACCTACATTCATTGCTGAAAAA-  1175

seq1: chrX_49116212_49117242
seq2: B6Ng01-019L05.g_68_1089 (reverse)

seq1  TTTGGAAAAAGGACCCAGTTTGGTTCTCAGACCTCATATCAGGTAGCTCC  50
      ||||| |||||||||| |||  ||| |||| |||||||||||||||||||
seq2  TTTGGGAAAAGGACCCGGTT--GTTTTCAG-CCTCATATCAGGTAGCTCC  47

seq1  AGGGATAAGATGCTATTATGTCCTGGCCACTGTGGATAACTGCACTTAAT  100
      | |||| |||||||||||| ||  ||| | || |||||||||||||||||
seq2  A-GGATTAGATGCTATTATTTC--GGCAATTG-GGATAACTGCACTTAAT  93

seq1  GTACATAAACCTAGATACATACACATACACAAAAACAAAAATAAAATAAA  150
      |||||||||||||||||||| ||| | |||||||  ||||||||| ||||
seq2  GTACATAAACCTAGATACAT-CAC-TTCACAAAACGAAAAATAAATTAAA  141

seq1  TCTTTGAAGAGAAAAGTAACACGAGGACAGAGGATTAAAATAGAGGAAAA  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTTTGAAGAGAAAAGTAACACGAGGACAGAGGA-TAAAATAGAGGAAAA  190

seq1  TGTGAGCCTGGGGCATGGCTCAGTTGCTAACGAGTCCATGGGGACTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCTGGGGCATGGCTCAGTTGCTAACGAGTCCATGGGGACTTGCT  240

seq1  GCCATGCTTTACAATCTGAGTTCAGTCTCCCAACCCAAATGGTGTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCTTTACAATCTGAGTTCAGTCTCCCAACCCAAATGGTGTAAGGA  290

seq1  GAGCACTGATTACCTAGAATTGTCCTGACCACCATATGTGCAATGACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGATTACCTAGAATTGTCCTGACCACCATATGTGCAATGACATC  340

seq1  CATGTGCTCACATGATCACATATACAC-AAAACACATGAAACATAATAAA  399
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATGTGCTCACATGATCACATATACACAAAAACACATGAAACATAATAAA  390

seq1  ATATTAAAATACATATAGGGATATGCTCCATAATTCCGAGGCTATAGTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAATACATATAGGGATATGCTCCATAATTCCGAGGCTATAGTTG  440

seq1  TAACATCAGTTGACAGAGTCGCTCTTATTTTAGTAGCTGTAATTCTGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCAGTTGACAGAGTCGCTCTTATTTTAGTAGCTGTAATTCTGTCT  490

seq1  CCTGCGTCTAAGCAGCTGTCAACAAGTTAAAATAGTTCCTTCTCCTATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTCTAAGCAGCTGTCAACAAGTTAAAATAGTTCCTTCTCCTATTG  540

seq1  TCCTTTCCTCTTCCTTTTTGTTTTTCTGTTTTCTATTCATTCTCAACTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTCTTCCTTTTTGTTTTTCTGTTTTCTATTCATTCTCAACTTG  590

seq1  CCCCTAAGCTGGAAGCAAGCAATAAGAAAGGAGGACAAAGCTGAATGTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAAGCTGGAAGCAAGCAATAAGAAAGGAGGACAAAGCTGAATGTTA  640

seq1  CGTGTATGTGGATTGGGTTGAAAGCAGGCAGGATCAGGTATAAGGGGTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATGTGGATTGGGTTGAAAGCAGGCAGGATCAGGTATAAGGGGTAG  690

seq1  GCAAGTTGAGATCTGATGAAAGGAAAGAAGAAACCACCCTCTCCTTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGAGATCTGATGAAAGGAAAGAAGAAACCACCCTCTCCTTTTTT  740

seq1  CTACCCTTCAAGTTTGGGTTAAAGGTCAACACTGCACTGCCTCTAGAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTCAAGTTTGGGTTAAAGGTCAACACTGCACTGCCTCTAGAGCA  790

seq1  TTAGCAATTAAATCCAGTCATTCTGTTCGTTTCCAGTATCAGTGTGCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATTAAATCCAGTCATTCTGTTCGTTTCCAGTATCAGTGTGCCTG  840

seq1  GCTTTTCAAAACGATTGGATCAAGACAGATTTTCTCCTTGCCTGTCTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAAAACGATTGGATCAAGACAGATTTTCTCCTTGCCTGTCTGGC  890

seq1  TTAAAGGTGCATTTCCACACTCAGCACACATCCAAATCATTGTATAGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTGCATTTCCACACTCAGCACACATCCAAATCATTGTATAGCAG  940

seq1  AGAAATGCCATTACTTCGCCTCTTGACATAAACTGCACATAAATCACTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCCATTACTTCGCCTCTTGACATAAACTGCACATAAATCACTCT  990

seq1  ATAGGAGGTCCTGACCAAAATAGGAAGAATTC  1031
      ||||||||||||||||||||||||||||||||
seq2  ATAGGAGGTCCTGACCAAAATAGGAAGAATTC  1022