BAC Information

Click to search

BAC

Clone NameB6Ng01-019L21
ChromosomeX (Build37)
Map Location 82,991,587 - 83,084,863
singlet/doubletdoublet
Overlap geneGyk, LOC100042350, LOC629340, LOC100041562
Upstream geneDmd, LOC100042296, LOC669833, 1600014K23Rik, Map3k7ip3
Downstream gene5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027, Il1rapl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019L21.bB6Ng01-019L21.g
ACCDH852742DH852743
length1,0981,129
definitionDH852742|Mus musculus domesticus DNA, BAC clone: B6Ng01-019L21, 5' end.DH852743|Mus musculus domesticus DNA, BAC clone: B6Ng01-019L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,083,762 - 83,084,863)(82,991,587 - 82,992,735)
sequence
gaattcattcacagaaatcagtaagaatataccctatatgcctataaagg
gtatgaatgactttacattttcatattactgatatcaggatgtggtgaac
aaatctgcacaagggaaaatattgtggtttgtgtcatgctgagcacatga
cactctctaaaaagcacacctgtttctgcagaagaccagggcaatggaac
aatctctatataacaacaaaccactttttcacttaccacaagaatttaat
ccaggcatggtgatgtacacttataatctcagatcctgtgaggccaagac
aaggccagtctgggctacatggtgaaatcctacagaatgaactaagggaa
ataaagaagggagaaagagtgatgaggggtgaggaagagaaagtaaggaa
atggaacagaaaagagaaaattacaaaaaattgaaaaaaaaaaacctaac
atctcgtgtccttcatgtgttctgaggaaagctcctccccctggaccatg
catggggctgggaagtgggagttcttccttgtttcctctctaccctacac
ccaaccaagtactccaactgtaatttcccatcacacctacaccttttttc
cagcctcacatacagacccactttgttccttcttgcctttagggtggaga
gtctctgcaagaaaggatgaggctgaggggggcgcataaattcccccctt
gatggacagcaggactcatcaatgagtaagcagggaagggaaaattctgt
tctgcatctaaagactccaaacgttttagcttctgcttctctctgtctct
ccttttcctttgcccctcacccctggggtttcagttctgcttatgctgcc
tttgtgttagagcattcatttcacatatataaagcatggtatgttcatcc
tacattgagaagatgaggaatccagattgttcatggagttatgtggtgtg
cctgactggatatccaatatgtgctcccatgtcaccatcagtacccattt
tcacacacctcaggactaaggcattcatgagatccatggggtcgcctcca
atgttgttctcaccatacttggtggtatagcaacaccataatttataa
gaattcttttactaaggttctcaacagtagactgggttcttaggtcaagc
cacactatagatcaaaacataataatatatatgaagaacttcataaaaat
gagaacctagtgaaatcactgtcacagataggagactgattagtttccat
aagcaattaaaatttaaaggacagaaattagaagattagaaatgaatgga
catactgttagaagaaaatatatttacaaaggagaattgaaagcttttat
gcaaaattacagatcaaaagtataagcacaatacaaaccttagggctctt
attttgatagaaaaaaataaaaaactatgaaagagtatttagagtaggaa
ttttctaaatacacatgattgacagaagacttgaaacccgggcaggctag
ttggcagtgcaagacactcagctcaggataaaatgtatatcttagagacc
ttgggagaagactgtgacaaagactaaagagagaatctaagccctattgc
tgaagtaacaaaggattcagtctcatgtataggatgtttatttacattaa
aatctttcaaaggatgcaagacatgaaatcattaaaagattttttttaat
tacaattcatttatttactgtattatatggggaaaactcttatgaaccac
tattttctttactaaatttgttacctgctttctgatccccaaggagaaaa
tatctcattttgattcatggcagaagcttgggaaatagaaagcactaaaa
actacatcatagattgcataagtaacaaacagaaccagatttgctatcgt
tttttaaagacagggaccattatatttaacttttatagcttttaatcttg
tagtggtaacttggtatttttaaatgctaactatgcttagatgcctcctg
aaaaaaatcagagcccatagtctatttaaaggattcgggagaggaaaggc
agcttgcacactaattttttatgctgacagatactagtttgactcacttc
ctgtgtctcttcatttaaaatcagttctttcctctagtaaatttcacaat
tctatatttaattgctgagttctcattttgcgggactattccacgaactt
taactggaacttcgaatccatactgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_83083762_83084863
seq2: B6Ng01-019L21.b_43_1140 (reverse)

seq1  TTATAAATTAT-GTGTATGCTATACCA-CAAGTATGGTG-GAACAAACAT  47
      ||||||||||| |||| |||||||||| ||||||||||| |||| |||||
seq2  TTATAAATTATGGTGT-TGCTATACCACCAAGTATGGTGAGAAC-AACAT  48

seq1  TAGAAGCGACACCATGGATCTTCATGAATGCCTATGTCTTGAGTGTGTTG  97
      | || ||||| ||||||||| ||||||||||||  ||| |||| ||||  
seq2  TGGAGGCGACCCCATGGATC-TCATGAATGCCTTAGTCCTGAG-GTGTGT  96

seq1  GAAATTGGGTAACTGATGGTGACATGGGAGCACATATTGGATATCCAGTC  147
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGGT-ACTGATGGTGACATGGGAGCACATATTGGATATCCAGTC  145

seq1  AGGCACACCACATAACTCCATGAACATTCTGGATTCCTCATCTTCTCAAT  197
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCACACCACATAACTCCATGAACAATCTGGATTCCTCATCTTCTCAAT  195

seq1  GTAGGATGAACATAACCATGCTTTATATATGTGGAAATGAATGCTCTAAC  247
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  GTAGGATGAACAT-ACCATGCTTTATATATGT-GAAATGAATGCTCTAAC  243

seq1  ACAAAGGCAGCATAAGCAGAACTGAAACCCCAGGGGTGAGGGGCAAAGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCAGCATAAGCAGAACTGAAACCCCAGGGGTGAGGGGCAAAGGA  293

seq1  AAAGGAGAGACAGAGAGAAGCAGAAGCTAAAACGTTTGGAGTCTTTAGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGACAGAGAGAAGCAGAAGCTAAAACGTTTGGAGTCTTTAGAT  343

seq1  GCAGAACAGAATTTTCCCTTCCCTGCTTACTCATTGGTGAGTCCTGCTGT  397
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCAGAACAGAATTTTCCCTTCCCTGCTTACTCATTGATGAGTCCTGCTGT  393

seq1  CCATCAAGGGGGGAATTTATGCGCCCCCCTCAGCCTCATCCTTTCTTGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAGGGGGGAATTTATGCGCCCCCCTCAGCCTCATCCTTTCTTGCA  443

seq1  GAGACTCTCCACCCTAAAGGCAAGAAGGAACAAAGTGGGTCTGTATGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTCCACCCTAAAGGCAAGAAGGAACAAAGTGGGTCTGTATGTGA  493

seq1  GGCTGGAAAAAAGGTGTAGGTGTGATGGGAAATTACAGTTGGAGTACTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAAAAAGGTGTAGGTGTGATGGGAAATTACAGTTGGAGTACTTG  543

seq1  GTTGGGTGTAGGGTAGAGAGGAAACAAGGAAGAACTCCCACTTCCCAGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTGTAGGGTAGAGAGGAAACAAGGAAGAACTCCCACTTCCCAGCC  593

seq1  CCATGCATGGTCCAGGGGGAGGAGCTTTCCTCAGAACACATGAAGGACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATGGTCCAGGGGGAGGAGCTTTCCTCAGAACACATGAAGGACAC  643

seq1  GAGATGTTAGGTTTTTTTTTTTCAATTTTTTGTAATTTTCTCTTTTCTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTAGGTTTTTTTTTTTCAATTTTTTGTAATTTTCTCTTTTCTGT  693

seq1  TCCATTTCCTTACTTTCTCTTCCTCACCCCTCATCACTCTTTCTCCCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCCTTACTTTCTCTTCCTCACCCCTCATCACTCTTTCTCCCTTC  743

seq1  TTTATTTCCCTTAGTTCATTCTGTAGGATTTCACCATGTAGCCCAGACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCCTTAGTTCATTCTGTAGGATTTCACCATGTAGCCCAGACTG  793

seq1  GCCTTGTCTTGGCCTCACAGGATCTGAGATTATAAGTGTACATCACCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCTTGGCCTCACAGGATCTGAGATTATAAGTGTACATCACCATG  843

seq1  CCTGGATTAAATTCTTGTGGTAAGTGAAAAAGTGGTTTGTTGTTATATAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTAAATTCTTGTGGTAAGTGAAAAAGTGGTTTGTTGTTATATAG  893

seq1  AGATTGTTCCATTGCCCTGGTCTTCTGCAGAAACAGGTGTGCTTTTTAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTCCATTGCCCTGGTCTTCTGCAGAAACAGGTGTGCTTTTTAGA  943

seq1  GAGTGTCATGTGCTCAGCATGACACAAACCACAATATTTTCCCTTGTGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCATGTGCTCAGCATGACACAAACCACAATATTTTCCCTTGTGCA  993

seq1  GATTTGTTCACCACATCCTGATATCAGTAATATGAAAATGTAAAGTCATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTCACCACATCCTGATATCAGTAATATGAAAATGTAAAGTCATT  1043

seq1  CATACCCTTTATAGGCATATAGGGTATATTCTTACTGATTTCTGTGAATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTTTATAGGCATATAGGGTATATTCTTACTGATTTCTGTGAATG  1093

seq1  AATTC  1102
      |||||
seq2  AATTC  1098

seq1: chrX_82991587_82992735
seq2: B6Ng01-019L21.g_69_1197

seq1  GAATTCTTTTACTAAGGTTCTCAACAGTAGACTGGGTTCTTAGGTCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACTAAGGTTCTCAACAGTAGACTGGGTTCTTAGGTCAAGC  50

seq1  CACACTATAGATCAAAACATAATAATATATATGAAGAACTTCATAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATAGATCAAAACATAATAATATATATGAAGAACTTCATAAAAAT  100

seq1  GAGAACCTAGTGAAATCACTGTCACAGATAGGAGACTGATTAGTTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTAGTGAAATCACTGTCACAGATAGGAGACTGATTAGTTTCCAT  150

seq1  AAGCAATTAAAATTTAAAGGACAGAAATTAGAAGATTAGAAATGAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTAAAATTTAAAGGACAGAAATTAGAAGATTAGAAATGAATGGA  200

seq1  CATACTGTTAGAAGAAAATATATTTACAAAGGAGAATTGAAAGCTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTTAGAAGAAAATATATTTACAAAGGAGAATTGAAAGCTTTTAT  250

seq1  GCAAAATTACAGATCAAAAGTATAAGCACAATACAAACCTTAGGGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTACAGATCAAAAGTATAAGCACAATACAAACCTTAGGGCTCTT  300

seq1  ATTTTGATAGAAAAAAATAAAAAACTATGAAAGAGTATTTAGAGTAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATAGAAAAAAATAAAAAACTATGAAAGAGTATTTAGAGTAGGAA  350

seq1  TTTTCTAAATACACATGATTGACAGAAGACTTGAAACCCGGGCAGGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAATACACATGATTGACAGAAGACTTGAAACCCGGGCAGGCTAG  400

seq1  TTGGCAGTGCAAGACACTCAGCTCAGGATAAAATGTATATCTTAGAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTGCAAGACACTCAGCTCAGGATAAAATGTATATCTTAGAGACC  450

seq1  TTGGGAGAAGACTGTGACAAAGACTAAAGAGAGAATCTAAGCCCTATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAAGACTGTGACAAAGACTAAAGAGAGAATCTAAGCCCTATTGC  500

seq1  TGAAGTAACAAAGGATTCAGTCTCATGTATAGGATGTTTATTTACATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAACAAAGGATTCAGTCTCATGTATAGGATGTTTATTTACATTAA  550

seq1  AATCTTTCAAAGGATGCAAGACATGAAATCATTAAAAGATTTTTTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCAAAGGATGCAAGACATGAAATCATTAAAAGATTTTTTTTAAT  600

seq1  TACAATTCATTTATTTACTGTATTATATGGGGAAAACTCTTATGAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCATTTATTTACTGTATTATATGGGGAAAACTCTTATGAACCAC  650

seq1  TATTTTCTTTACTAAATTTGTTACCTGCTTTCTGATCCCCAAGGAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTTACTAAATTTGTTACCTGCTTTCTGATCCCCAAGGAGAAAA  700

seq1  TATCTCATTTTGATTCATGGCAGAAGCTTGGGAAATAGAAAGCACTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATTTTGATTCATGGCAGAAGCTTGGGAAATAGAAAGCACTAAAA  750

seq1  ACTACATCATAGATTGCATAAGTAACAAACAGAACCAGATTTGCTATCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCATAGATTGCATAAGTAACAAACAGAACCAGATTTGCTATCGT  800

seq1  TTTTTAAAGACAGGGACCATTATATTTAACTTTTATAGCTTTTAATCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGACAGGGACCATTATATTTAACTTTTATAGCTTTTAATCTTG  850

seq1  TAGTGGTAACTTGGTATTTTTAAATGCTAACTATGCTTAGATGCCTCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTAACTTGGTATTTTTAAATGCTAACTATGCTTAGATGCCTCCTG  900

seq1  AAAAAAAATCAGAGCCCATAGTCTATTTAAAGGATTCGGGAGGAGGAAAG  950
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  -AAAAAAATCAGAGCCCATAGTCTATTTAAAGGATTCGGGA-GAGGAAAG  948

seq1  GCAAGCTTGCACACTAAATTTTTTAATGCTGACAGATACCTAGTTTGACT  1000
      || ||||||||||||||  ||||| ||||||||||||| |||||||||||
seq2  GC-AGCTTGCACACTAA--TTTTTTATGCTGACAGATA-CTAGTTTGACT  994

seq1  CACTTCCTGTGTTCTCTTCATTTAAAATCAGTTCTTTCCTCTAGTAAATT  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTGTG-TCTCTTCATTTAAAATCAGTTCTTTCCTCTAGTAAATT  1043

seq1  TCAACAAATTCTAATTATTTAAATTGCTGAGTTCTTCATTTTGGCGGGAC  1100
      |||   |||||||  ||||| ||||||||||||| ||||||| |||||||
seq2  TCA--CAATTCTA--TATTT-AATTGCTGAGTTC-TCATTTT-GCGGGAC  1086

seq1  TAATTCCCACGAGACTTTAACTGGAGACTTCCAGATACAATACTGATTT  1149
      ||  | |||||| |||||||||||| |||||  ||  | ||||||||||
seq2  TA--TTCCACGA-ACTTTAACTGGA-ACTTC--GAATCCATACTGATTT  1129