BAC Information

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BAC

Clone NameB6Ng01-019O18
ChromosomeX (Build37)
Map Location 133,162,421 - 133,274,818
singlet/doubletdoublet
Overlap geneTceal3, Tceal1, Morf4l2
Upstream gene1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196, Kir3dl2, LOC100041079, Kir3dl1
Downstream geneBC065397, Glra4, LOC100041122, Plp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303, Il1rapl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019O18.bB6Ng01-019O18.g
ACCDH852868DH852869
length1,126645
definitionDH852868|Mus musculus domesticus DNA, BAC clone: B6Ng01-019O18, 5' end.DH852869|Mus musculus domesticus DNA, BAC clone: B6Ng01-019O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,162,421 - 133,163,549)(133,274,172 - 133,274,818)
sequence
gaattcttatggtgtactatgaaaagatgacagcattagcagggcttaat
ttgagtgttattttggggagatgttttatatgacctcacagatcttctaa
taacacatatcactcatgtaaatacattagtaaagttgttgagcacaaat
gtttgctgtactacctacagaaaagctacttacttcaaaatgacaacata
ggaaaggagaaaagatttctggtagtgctgtataaaatactgcagaccta
tttttcaaagttcccaaatatgacttttttcttttaaagtattttaccaa
agtgcccagttaactgagaaaaccagttacacttattttactgagccttg
attaagaaaaacactggtcttgtcaccaagaaacagttaagtagcaccta
ttggttagaggtatttacctgtgacctgcatgacctctgttcatttctga
ccctcatcactcactggctgtgccatctccatttagttttcatatgtttt
taaaaaatatatttctggtttttaatgtatccttttcctttttaaagtgt
atttgttttacatattttatgtatacaagagctttgttttcatgtatgcc
tgcacaccagaaggcttcagatcacattataaatggttgtgagatgccat
gtgggtactaggaattgtactcaggagctctagaagagcagccagtgctt
ttaggcattgaatcatctctctagtccctggttatgatatttttagtcat
taaaatattaaattctgagttactagcaatagaaagtcttaaattagtaa
gtataatcttggcattgacaatagtgtaggaacactgaggaaatcagaat
aaatattaaccaaattagttactgtttttatactgtcttagtcactgttc
tattgctgtggagacaccataaccaaatcaattcttctgaaagaaagcat
gtaattgggggcttgcttacagtttagaattcattaggttcttagtgtca
tgggtgggaagcatggcagcattggagcaggagctgaaagctactttctg
gatcccaggcagcagggaaagaagaaagcttggtctggcaaggactttta
aactcaagcccacactcaatgaacag
gaattctgaagtcatttttttcccgatagcttaaaaaaccgtgggggggg
gagcagtgggtggggttacagatgaaacaagatggccttcagttggtaat
tgttggagctggatgaaggattcgcagccgtttgtactgctgttctttta
caattttatttatttcacattatccttaatagaaattaattaattttttt
ccaaaattgataaacatacaagaaagtacatttatctgaaaataaaacta
caagaaaaatagaatttctacattatcagctttgatgtcctttgtgtgag
ataaaattttatttactgatggaaaggaaagtcaccatctcatatctttt
tatgtccttttccatctctttgtttgaccttctaggtcatcatcagaaaa
gctaagtttgctatacagtaaggatcaggagatctgaccctggttgcaga
accattcctggttgcagaatacagggtaagtgccttccttctggcctcag
tttacagaccagctatatcacaaccttcttagatgtgtagcagtattttg
aagattattaagctgccatctgagaaagtgctttaattctgaaatgggaa
ggataaacaatatagtcatgcgtaatctttattccttattaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_133162421_133163549
seq2: B6Ng01-019O18.b_46_1171

seq1  GAATTCTTATGGTGTACTATGAAAAGATGACAGCATTAGCAGGGCTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGGTGTACTATGAAAAGATGACAGCATTAGCAGGGCTTAAT  50

seq1  TTGAGTGTTATTTTGGGGAGATGTTTTATATGACCTCACAGATCTTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTTATTTTGGGGAGATGTTTTATATGACCTCACAGATCTTCTAA  100

seq1  TAACACATATCACTCATGTAAATACATTAGTAAAGTTGTTGAGCACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATATCACTCATGTAAATACATTAGTAAAGTTGTTGAGCACAAAT  150

seq1  GTTTGCTGTACTACCTACAGAAAAGCTACTTACTTCAAAATGACAACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGTACTACCTACAGAAAAGCTACTTACTTCAAAATGACAACATA  200

seq1  GGAAAGGAGAAAAGATTTCTGGTAGTGCTGTATAAAATACTGCAGACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGAAAAGATTTCTGGTAGTGCTGTATAAAATACTGCAGACCTA  250

seq1  TTTTTCAAAGTTCCCAAATATGACTTTTTTCTTTTAAAGTATTTTACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAAGTTCCCAAATATGACTTTTTTCTTTTAAAGTATTTTACCAA  300

seq1  AGTGCCCAGTTAACTGAGAAAACCAGTTACACTTATTTTACTGAGCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCAGTTAACTGAGAAAACCAGTTACACTTATTTTACTGAGCCTTG  350

seq1  ATTAAGAAAAACACTGGTCTTGTCACCAAGAAACAGTTAAGTAGCACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAAAACACTGGTCTTGTCACCAAGAAACAGTTAAGTAGCACCTA  400

seq1  TTGGTTAGAGGTATTTACCTGTGACCTGCATGACCTCTGTTCATTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGAGGTATTTACCTGTGACCTGCATGACCTCTGTTCATTTCTGA  450

seq1  CCCTCATCACTCACTGGCTGTGCCATCTCCATTTAGTTTTCATATGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCACTCACTGGCTGTGCCATCTCCATTTAGTTTTCATATGTTTT  500

seq1  TAAAAAATATATTTCTGGTTTTTAATGTATCCTTTTCCTTTTTAAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATATATTTCTGGTTTTTAATGTATCCTTTTCCTTTTTAAAGTGT  550

seq1  ATTTGTTTTACATATTTTATGTATACAAGAGCTTTGTTTTCATGTATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTACATATTTTATGTATACAAGAGCTTTGTTTTCATGTATGCC  600

seq1  TGCACACCAGAAGGCTTCAGATCACATTATAAATGGTTGTGAGATGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCAGAAGGCTTCAGATCACATTATAAATGGTTGTGAGATGCCAT  650

seq1  GTGGGTACTAGGAATTGTACTCAGGAGCTCTAGAAGAGCAGCCAGTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTACTAGGAATTGTACTCAGGAGCTCTAGAAGAGCAGCCAGTGCTT  700

seq1  TTAGGCATTGAATCATCTCTCTAGTCCCTGGTTATGATATTTTTAGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCATTGAATCATCTCTCTAGTCCCTGGTTATGATATTTTTAGTCAT  750

seq1  TAAAATATTAAATTCTGAGTTACTAGCAATAGAAAGTCTTAAATTAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTAAATTCTGAGTTACTAGCAATAGAAAGTCTTAAATTAGTAA  800

seq1  GTATAATCTTGGCATTGACAATAGTGTAGGAACACTGAGGAAATCAGGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTATAATCTTGGCATTGACAATAGTGTAGGAACACTGAGGAAATCA-GAA  849

seq1  TAAATATTAACCAAATTAGTTACTGTTTTTTATACTGTCTTAGTCACTGT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAAATATTAACCAAATTAGTTACTG-TTTTTATACTGTCTTAGTCACTGT  898

seq1  TCTATTGCTGTGGAGACACCATAACCAAATCAATTCTTCTGAAAGAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCTGTGGAGACACCATAACCAAATCAATTCTTCTGAAAGAAAGC  948

seq1  ATGTAATTGGGGGCTTGCTTACAGTTTAGAATTCA-TAGGTTCTTAGTGT  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGTAATTGGGGGCTTGCTTACAGTTTAGAATTCATTAGGTTCTTAGTGT  998

seq1  CAT-GGTGGGAAGCATGGCAGCA-TGGAGCAGGAGCTGAAAGCTAC-ATC  1046
      ||| ||||||||||||||||||| ||||||||||||||||||||||  ||
seq2  CATGGGTGGGAAGCATGGCAGCATTGGAGCAGGAGCTGAAAGCTACTTTC  1048

seq1  TGGATCCCCAGGCAGCAGGAAAAG-AGAAAGCCTTGGCCTGGCAAGGACT  1095
      ||||| ||||||||||||| |||| |||||| ||||| ||||||||||||
seq2  TGGAT-CCCAGGCAGCAGGGAAAGAAGAAAG-CTTGGTCTGGCAAGGACT  1096

seq1  TTTCAAACTTCAAAGCCCACACTCAATGACACAG  1129
      ||| |||||   ||||||||||||||||| ||||
seq2  TTT-AAACT--CAAGCCCACACTCAATGA-ACAG  1126

seq1: chrX_133274172_133274818
seq2: B6Ng01-019O18.g_67_711 (reverse)

seq1  TTTTTAATTAAGAGAAT-AAGATTACGCATGACTATATTGTTTATCCTTC  49
      ||||||| |||| |||| ||||||||||||||||||||||||||||||||
seq2  TTTTTAA-TAAG-GAATAAAGATTACGCATGACTATATTGTTTATCCTTC  48

seq1  CCTTTTCAGAATTTAAAGCACTTTCTCAGATGGCAGCTTATTAATCTTCA  99
      || |||||||| |||||||||||||||||||||||||||| |||||||||
seq2  CCATTTCAGAA-TTAAAGCACTTTCTCAGATGGCAGCTTAATAATCTTCA  97

seq1  AAATACTGCTACACATCTAAGAAGGTTGTGATATAGCTGGTCTGTAAACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGCTACACATCTAAGAAGGTTGTGATATAGCTGGTCTGTAAACT  147

seq1  GAGGCCAGAAGGAAGGCACTTACCCTGTATTCTGCAACCAGGAATGGTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGAAGGAAGGCACTTACCCTGTATTCTGCAACCAGGAATGGTTC  197

seq1  TGCAACCAGGGTCAGATCTCCTGATCCTTACTGTATAGCAAACTTAGCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCAGGGTCAGATCTCCTGATCCTTACTGTATAGCAAACTTAGCTT  247

seq1  TTCTGATGATGACCTAGAAGGTCAAACAAAGAGATGGAAAAGGACATAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGATGACCTAGAAGGTCAAACAAAGAGATGGAAAAGGACATAAA  297

seq1  AAGATATGAGATGGTGACTTTCCTTTCCATCAGTAAATAAAATTTTATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGAGATGGTGACTTTCCTTTCCATCAGTAAATAAAATTTTATCT  347

seq1  CACACAAAGGACATCAAAGCTGATAATGTAGAAATTCTATTTTTCTTGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAGGACATCAAAGCTGATAATGTAGAAATTCTATTTTTCTTGTA  397

seq1  GTTTTATTTTCAGATAAATGTACTTTCTTGTATGTTTATCAATTTTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTCAGATAAATGTACTTTCTTGTATGTTTATCAATTTTGGAA  447

seq1  AAAAATTAATTAATTTCTATTAAGGATAATGTGAAATAAATAAAATTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAATTAATTTCTATTAAGGATAATGTGAAATAAATAAAATTGTA  497

seq1  AAAGAACAGCAGTACAAACGGCTGCGAATCCTTCATCCAGCTCCAACAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAGCAGTACAAACGGCTGCGAATCCTTCATCCAGCTCCAACAAT  547

seq1  TACCAACTGAAGGCCATCTTGTTTCATCTGTAACCCCACCCACTGCTCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTGAAGGCCATCTTGTTTCATCTGTAACCCCACCCACTGCTCCC  597

seq1  CCCCCCACGGTTTTTTAAGCTATCGGGAAAAAAATGACTTCAGAATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACGGTTTTTTAAGCTATCGGGAAAAAAATGACTTCAGAATTC  645