BAC Information

Click to search

BAC

Clone NameB6Ng01-020B01
ChromosomeX (Build37)
Map Location 165,224,703 - 165,354,554
singlet/doubletdoublet
Overlap geneArhgap6
Upstream geneFrmpd4, EG667822, EG637566, Msl31
Downstream geneAmelx, Hccs, LOC100040950, BC022960, Mid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020B01.bB6Ng01-020B01.g
ACCDH852969DH852970
length9941,103
definitionDH852969|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B01, 5' end.DH852970|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,224,703 - 165,225,694)(165,353,428 - 165,354,554)
sequence
gaattcatacagacagacacagacactggtatgcacacatgcactcacta
actcactcatgaagacaggattgcttatatcatcccatttccatgcagtg
ttagagatttggaagaaaacatttaaaaatcagagggaaaacttccatat
tatttcattattttcaaaagttggacatattaacaatgtttatgttacga
acattgtagaataatgaacaaaatattaccattgtttatattgccacaca
gttattcatcctccaaagcattcctaaaatatcctatggaaagctgtcct
ctagaagcttcttaaaggcttaaacttgctttaatcaacatatttgtaca
tatttaacattttaattagtttaaaaatatttaaattaattttccataca
atatagaattatcatgatttttcccttccccaactcctcccttctacttc
tacttccaactccttcctacttcactacccacccagttttatgccctttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
ccttccttccttccttccttacttccttccttccttcctccctccctccc
tccctccctctctctctttctctctctctctctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctccctttctttt
ctttctttagaaaacagaaaaatgaaacaaaccataattagaaacaaaaa
acagcaagaaacacacacacacataaaataaaacccataaaaacataaaa
tcagaaatcatagtatacaagcaaagaccactaagacaaaaatgactaaa
caatgcaatatgagacaaaaaagtattcaaaaatatcattgagttcatgt
tgtattgaccatctagctctcactggtcatgagacttaccctcaagtctc
cttaaatagccaatgagactactttggagaaaactactttttat
gaattcatcagacagggagtgtccttgtgagtcaaaaccagccctttctt
tatctaaataccttggctataaaatgaaggtgtttggccttgttcttcct
ctgagcacaaatggttctgagaaagttctccaaaatataaggggaaacat
tcttgacaaaacaatattttaaagatttaatatttaactattaaagtgat
gttgcatttctttgaagtacaaatgtacaaattctgatcaccctggattt
aaaatcacaaaacttgaggtagctcaagagcagtgattctcagcatgcta
gtcatgtcccctttgcagtgaatccaagaacttttcacaggggtcacaca
tcatatatcctgcatatcaaatattttcattatgattcataacagcagca
aaactactgttatgaagtagcaatgaaaataattttatggttgtggtcac
cacaacatgaaaaaatgtattaaagggtcacagccttaggaaggttgaga
accaccacaacctagagaatatttccttcaaagtttttatacaacagaga
ctaaatattacagctgatggtatctgccttcacacacacacacacacaca
cacacacacacacacacacaagacagaaagcactagtgtgtttaaagaag
cctatgaaatacctccaaattgaaccacgaaatatgtattatcctactca
cacagtccaatatcgattcagtagcagcacattttctaccagctaaaaac
tgaactgaaacaaaatgagtatgagtggcatttttgtgaaaggatgtaaa
acttcccccatgtaggaaggtgaatgctgatgacacgtgtggatacgtga
gaatgcggctgttgtgttttgtgcaacccctgaccttctagtttcctcct
ttctttctcctctttctttctttcttcatctttcttcctcttttctcttc
tcatgtctgcttaaaaataattttaaagacatgaaaggagctttcttctt
actgaagaattaagaaccaagtacatttaatgttgctttcttgttttcta
aggtgcttcctcatttgctgttcaaaaatttagtcttctaactggaatta
tca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_165224703_165225694
seq2: B6Ng01-020B01.b_41_1034

seq1  GAATTCATACAGACAGACACAGACACTGGTATGCACACATGCACTCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGACAGACACAGACACTGGTATGCACACATGCACTCACTA  50

seq1  ACTCACTCATGAAGACAGGATTGCTTATATCATCCCATTTCCATGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCATGAAGACAGGATTGCTTATATCATCCCATTTCCATGCAGTG  100

seq1  TTAGAGATTTGGAAGAAAACATTTAAAAATCAGAGGGAAAACTTCCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATTTGGAAGAAAACATTTAAAAATCAGAGGGAAAACTTCCATAT  150

seq1  TATTTCATTATTTTCAAAAGTTGGACATATTAACAATGTTTATGTTACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTATTTTCAAAAGTTGGACATATTAACAATGTTTATGTTACGA  200

seq1  ACATTGTAGAATAATGAACAAAATATTACCATTGTTTATATTGCCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAGAATAATGAACAAAATATTACCATTGTTTATATTGCCACACA  250

seq1  GTTATTCATCCTCCAAAGCATTCCTAAAATATCCTATGGAAAGCTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCATCCTCCAAAGCATTCCTAAAATATCCTATGGAAAGCTGTCCT  300

seq1  CTAGAAGCTTCTTAAAGGCTTAAACTTGCTTTAATCAACATATTTGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCTTCTTAAAGGCTTAAACTTGCTTTAATCAACATATTTGTACA  350

seq1  TATTTAACATTTTAATTAGTTTAAAAATATTTAAATTAATTTTCCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACATTTTAATTAGTTTAAAAATATTTAAATTAATTTTCCATACA  400

seq1  ATATAGAATTATCATGATTTTTCCCTTCCCCAACTCCTCCCTTCTACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAATTATCATGATTTTTCCCTTCCCCAACTCCTCCCTTCTACTTC  450

seq1  TACTTCCAACTCCTTCCTACTTCACTACCCACCCAGTTTTATGCCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCAACTCCTTCCTACTTCACTACCCACCCAGTTTTATGCCCTTTC  500

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  550

seq1  CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCC  600
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTCCTTACTTCCTTCCTTCCTTCCTCCCTCCCTCCC  600

seq1  TCCCTCCCTCTCTCTCTTTCTCTCTCTCTC----TCTTTCTTTCTTTCTT  646
      ||||||||||||||||||||||||||||||    ||||||||||||||||
seq2  TCCCTCCCTCTCTCTCTTTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTT  650

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCCTTTCTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCCTTTCTTTT  700

seq1  CTTTCTTTAGAAAACAGAAAAATGAAACAAACCATAATTAGAAACAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTAGAAAACAGAAAAATGAAACAAACCATAATTAGAAACAAAAA  750

seq1  ACAGCAAGAAACACACACACACATAAAATAAAACCCATAAAAACATAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGAAACACACACACACATAAAATAAAACCCATAAAAACATAAAA  800

seq1  TCAGAAATCATAGTATACAAGCAAAGACCACTAAGACAAAAAATGACTAA  846
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAGAAATCATAGTATACAAGCAAAGACCACTAAGAC-AAAAATGACTAA  849

seq1  ACAATGCAATATGAGACAAAAAAGTATTCAAAAATATCATTGAGTTCATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAATATGAGACAAAAAAGTATTCAAAAATATCATTGAGTTCATG  899

seq1  TTGTATTGACCATCTAGCTCTCACTGGTCATGAGACTTACCCTCAAGTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGACCATCTAGCTCTCACTGGTCATGAGACTTACCCTCAAGTCT  949

seq1  CCTTAAAATAGCCAATGAGACTACTTTGGAGAAAACTACTTTTTAT  992
      |||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTT-AAATAGCCAATGAGACTACTTTGGAGAAAACTACTTTTTAT  994

seq1: chrX_165353428_165354554
seq2: B6Ng01-020B01.g_63_1165 (reverse)

seq1  TGATAATTCCCCAGTTTAGAAGAGCTAAAATATTCTGAACAGCAAATGAG  50
      ||||||||  |||| |||||||| |||||   || |||||||||||||||
seq2  TGATAATT--CCAG-TTAGAAGA-CTAAA--TTTTTGAACAGCAAATGAG  44

seq1  GAAGCAACCCTTAGAAAACAAGAAAGCAACATTAAATTGTACTTGGTTTC  100
      ||||||  |||||||||||||||||||||||||||| ||||||||| |||
seq2  GAAGCA--CCTTAGAAAACAAGAAAGCAACATTAAA-TGTACTTGG-TTC  90

seq1  TTAATTCTTCCAGT-AGGAGAAAGCTCCCTTTTCATGTCTTTAAAATTAT  149
      ||||||||| |||| || ||||||||||  ||||||||||||||||||||
seq2  TTAATTCTT-CAGTAAGAAGAAAGCTCC--TTTCATGTCTTTAAAATTAT  137

seq1  TTTTAAGGCAGGACATTGAGAAAGAGAAAAAGAAGGAAGAAAGAATGAAA  199
      |||||| ||| |||| |||| |||||||||   |||||||||| ||| ||
seq2  TTTTAA-GCA-GACA-TGAG-AAGAGAAAA--GAGGAAGAAAG-ATG-AA  179

seq1  GAAAGAAAGAAAAGAAGGAAGAAAGAAAGGAAGGAAACTAGAAGGTCAGG  249
      ||||||||| |||||  | ||||||||||| |||||||||||||||||||
seq2  GAAAGAAAG-AAAGA--GGAGAAAGAAAGG-AGGAAACTAGAAGGTCAGG  225

seq1  GGTTGCACAAAACACAACAGCCGCATTCTCACGTATCCACACGTGTCATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCACAAAACACAACAGCCGCATTCTCACGTATCCACACGTGTCATC  275

seq1  AGCATTCACCTTCCTACATGGGGGAAGTTTTACATCCTTTCACAAAAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCACCTTCCTACATGGGGGAAGTTTTACATCCTTTCACAAAAATG  325

seq1  CCACTCATACTCATTTTGTTTCAGTTCAGTTTTTAGCTGGTAGAAAATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATACTCATTTTGTTTCAGTTCAGTTTTTAGCTGGTAGAAAATGT  375

seq1  GCTGCTACTGAATCGATATTGGACTGTGTGAGTAGGATAATACATATTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTACTGAATCGATATTGGACTGTGTGAGTAGGATAATACATATTTC  425

seq1  GTGGTTCAATTTGGAGGTATTTCATAGGCTTCTTTAAACACACTAGTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCAATTTGGAGGTATTTCATAGGCTTCTTTAAACACACTAGTGCT  475

seq1  TTCTGTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA  525

seq1  GGCAGATACCATCAGCTGTAATATTTAGTCTCTGTTGTATAAAAACTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATACCATCAGCTGTAATATTTAGTCTCTGTTGTATAAAAACTTTG  575

seq1  AAGGAAATATTCTCTAGGTTGTGGTGGTTCTCAACCTTCCTAAGGCTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATATTCTCTAGGTTGTGGTGGTTCTCAACCTTCCTAAGGCTGTG  625

seq1  ACCCTTTAATACATTTTTTCATGTTGTGGTGACCACAACCATAAAATTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTAATACATTTTTTCATGTTGTGGTGACCACAACCATAAAATTAT  675

seq1  TTTCATTGCTACTTCATAACAGTAGTTTTGCTGCTGTTATGAATCATAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGCTACTTCATAACAGTAGTTTTGCTGCTGTTATGAATCATAAT  725

seq1  GAAAATATTTGATATGCAGGATATATGATGTGTGACCCCTGTGAAAAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTTGATATGCAGGATATATGATGTGTGACCCCTGTGAAAAGTT  775

seq1  CTTGGATTCACTGCAAAGGGGACATGACTAGCATGCTGAGAATCACTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTCACTGCAAAGGGGACATGACTAGCATGCTGAGAATCACTGCT  825

seq1  CTTGAGCTACCTCAAGTTTTGTGATTTTAAATCCAGGGTGATCAGAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTACCTCAAGTTTTGTGATTTTAAATCCAGGGTGATCAGAATTT  875

seq1  GTACATTTGTACTTCAAAGAAATGCAACATCACTTTAATAGTTAAATATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTGTACTTCAAAGAAATGCAACATCACTTTAATAGTTAAATATT  925

seq1  AAATCTTTAAAATATTGTTTTGTCAAGAATGTTTCCCCTTATATTTTGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTAAAATATTGTTTTGTCAAGAATGTTTCCCCTTATATTTTGGA  975

seq1  GAACTTTCTCAGAACCATTTGTGCTCAGAGGAAGAACAAGGCCAAACACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCTCAGAACCATTTGTGCTCAGAGGAAGAACAAGGCCAAACACC  1025

seq1  TTCATTTTATAGCCAAGGTATTTAGATAAAGAAAGGGCTGGTTTTGACTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTATAGCCAAGGTATTTAGATAAAGAAAGGGCTGGTTTTGACTC  1075

seq1  ACAAGGACACTCCCTGTCTGATGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  ACAAGGACACTCCCTGTCTGATGAATTC  1103