BAC Information

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BAC

Clone NameB6Ng01-020P11
ChromosomeX (Build37)
Map Location 70,973,367 - 71,140,285
singlet/doubletdoublet
Overlap geneAbcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4
Upstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31
Downstream geneArd1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020P11.bB6Ng01-020P11.g
ACCDH853614DH853615
length1,1641,024
definitionDH853614|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P11, 5' end.DH853615|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,973,367 - 70,974,537)(71,139,248 - 71,140,285)
sequence
gaattcctaggtcctttggtaattcactatttaagtttgtgaggaactgc
taagtacttttccatttgatctcctcccagccatagatggaggtcccact
tctcacctggtcaatgtctgctcttacctcgctttcctccagcttccttt
gtcaagatgacatgttatttcttagcaatatcagtttccttagtgattaa
tgatgtcaagcatctttttataaacttactgtgatgaggaagtgcacctt
actacacacatgtagcggtcagaaggcaactttggggaatcagttctcaa
cttccaccatacagaccctggagatcaaacttaggtcattaggcttggtg
accaacacctttaccagctgagccacctcaccaacacaccttattgctct
ttatatgtctttatttttttttctgagaaaacatttcactagctcaggtt
ggccttgaacatgtggcattcctcttccctcagcctttggactactgaga
aaccaggcaaccaggcaaattttttatatatatacacacatacatacata
catacatacatacatacatacatacatatggatccttttccagctgtgtg
aagtcaagatcctcctgtttccaccacctaaatgctgggttgcagtttag
aagtattctttcccaggctatatattgtttgccattgcactttactgatt
aagtccctcagtgctcaaaaattatttaattttgaaagttcaggttaatc
tatttttcttgtttgtgtttctaacaaatcaaacctaaggacaagtgtta
cccattttttcctgtgagttagtttttcatttgtgctatgagatggagta
tgtgctctgtacatttatcagtcataacatggtatccacaatattcatct
tttccatggtggctccatgactttcactgtctttcctaacccactgtggc
tttagactcagaagcatgagaagcagctttggaaatgaagaggaggagct
ggttagtgagcgtacagaagcttttaccattgctcgaaccttcctcacag
tctgctgcagatgcaccgaaaggatcatgtccttcttataggaggtaccc
cagtaaactcctatcctggcttgctctttcctttctgaactgcctgggat
aggagcatgtcacc
gaattctgtgtttaaggagctcttgggaaagactgctgtccgccagggcc
atgggttagcatctacagcctccccgagtctaggaactctgacgcccctg
gcctgcagcagcatcagcaaaaacaaagtcttctcccggggacctggggc
tccaatttccccctcaacctcccatccccagggtccagattcaactcgca
agccagtctgaggcagcttacctccagcagccaccaccaagcccaccatt
ccacataggcctattgcttcacctcagccctcttctaggtctcttgggag
gtagcaaaggaaggaagctggagatgagctcctcttatgcctttgcttgg
aagccttgggctgtggctgtgaaatatggaagtggcagtaattcataaag
accccatgtgctggttgctgttgtaatagcctgtgctgtttggggggcgc
tgaacaggtagggtgcagggcaactcccagagcctgcactgctagagacc
agatgccaagacagaaggttgacatggagctgtttattttcacctgggga
cctgctctcaaaaatacagtcttggttgcttatatcacagattcctgaac
ataggtatgtctatgggtgtgcgaatctttgtatttcagcttctgtgccc
accatatacctggtccaaggaaattttttccatgtggaaaatgaactgca
acttttattagggagacagacagagggaggaatgacaggaaggtctattg
gtcctatcctggtccttcttccagctccctgggagtcttcctcacctgca
gagtacttgccagaatgggaagcccaagtgcctctgttgcctattctcct
cctagaccttgaggcatctgtcccagttgcttcccatgtctggcaacaaa
ggagccatgttaagtttctttacacccttccttcttgtatacctgggaca
tgtcacctaggaggacaaggatacaagtaccctttctggtattccagggc
accctaaatagtcagctagctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_70973367_70974537
seq2: B6Ng01-020P11.b_46_1209

seq1  GAATTCCTAGGTCCTTTGGTAATTCACTATTTAAGTTTGTGAGGAACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGTCCTTTGGTAATTCACTATTTAAGTTTGTGAGGAACTGC  50

seq1  TAAGTACTTTTCCATTTGATCTCCTCCCAGCCATAGATGGAGGTCCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACTTTTCCATTTGATCTCCTCCCAGCCATAGATGGAGGTCCCACT  100

seq1  TCTCACCTGGTCAATGTCTGCTCTTACCTCGCTTTCCTCCAGCTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTGGTCAATGTCTGCTCTTACCTCGCTTTCCTCCAGCTTCCTTT  150

seq1  GTCAAGATGACATGTTATTTCTTAGCAATATCAGTTTCCTTAGTGATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGATGACATGTTATTTCTTAGCAATATCAGTTTCCTTAGTGATTAA  200

seq1  TGATGTCAAGCATCTTTTTATAAACTTACTGTGATGAGGAAGTGCACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCAAGCATCTTTTTATAAACTTACTGTGATGAGGAAGTGCACCTT  250

seq1  ACTACACACATGTAGCGGTCAGAAGGCAACTTTGGGGAATCAGTTCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACACATGTAGCGGTCAGAAGGCAACTTTGGGGAATCAGTTCTCAA  300

seq1  CTTCCACCATACAGACCCTGGAGATCAAACTTAGGTCATTAGGCTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCATACAGACCCTGGAGATCAAACTTAGGTCATTAGGCTTGGTG  350

seq1  ACCAACACCTTTACCAGCTGAGCCACCTCACCAACACACCTTATTGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACCTTTACCAGCTGAGCCACCTCACCAACACACCTTATTGCTCT  400

seq1  TTATATGTCTTTATTTTTTTTTCTGAGAAAACATTTCACTAGCTCAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTCTTTATTTTTTTTTCTGAGAAAACATTTCACTAGCTCAGGTT  450

seq1  GGCCTTGAACATGTGGCATTCCTCTTCCCTCAGCCTTTGGACTACTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAACATGTGGCATTCCTCTTCCCTCAGCCTTTGGACTACTGAGA  500

seq1  AACCAGGCAACCAGGCAAATTTTTTATATATATACACACATACATACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGCAACCAGGCAAATTTTTTATATATATACACACATACATACATA  550

seq1  CATACATACATACATACATACATACATATGGATCCTTTTCCAGCTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACATACATACATACATACATATGGATCCTTTTCCAGCTGTGTG  600

seq1  AAGTCAAGATCCTCCTGTTTCCACCACCTAAATGCTGGGTTGCAGTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAGATCCTCCTGTTTCCACCACCTAAATGCTGGGTTGCAGTTTAG  650

seq1  AAGTATTCTTTCCCAGGCTATATATTGTTTGCCATTGCACTTTACTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCTTTCCCAGGCTATATATTGTTTGCCATTGCACTTTACTGATT  700

seq1  AAGTCCCTCAGTGCTCAAAAATTATTTAATTTTG-AAGTTCAGGTTAATC  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGTCCCTCAGTGCTCAAAAATTATTTAATTTTGAAAGTTCAGGTTAATC  750

seq1  TATTTTTCTTGTTTGTGTTTCTAACAAATCAAACCTAAGGACAAGTGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTTGTTTGTGTTTCTAACAAATCAAACCTAAGGACAAGTGTTA  800

seq1  CCCATTTTTTCCTGTGAGTTAG-TTTTCATTTGTGCTATGAGATGGAGTA  848
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCATTTTTTCCTGTGAGTTAGTTTTTCATTTGTGCTATGAGATGGAGTA  850

seq1  TGTGCTCTGTACATCTATCAGTCATAACATGGTATCCACAATATTCATCT  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGTACATTTATCAGTCATAACATGGTATCCACAATATTCATCT  900

seq1  TTTCCATGGTGGCTCCATGACTTTCCACTGTCTTTCCTAACCCAACTGTG  948
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  TTTCCATGGTGGCTCCATGACTTT-CACTGTCTTTCCTAACCC-ACTGTG  948

seq1  GCTTTTAGACTCAGAAGCCATGAAGAAGGCAGCCTTGGAAATGAAGGAAG  998
      || |||||||||||||| |||| |||| ||||| ||||||||||| || |
seq2  GC-TTTAGACTCAGAAG-CATG-AGAA-GCAGCTTTGGAAATGAA-GAGG  993

seq1  AGGAGCTGGTTAGTGAGCGTACAGAAGCTTTCACCATTGCCCGAAACCTC  1048
      ||||||||||||||||||||||||||||||| |||||||| |||| | ||
seq2  AGGAGCTGGTTAGTGAGCGTACAGAAGCTTTTACCATTGCTCGAACCTTC  1043

seq1  CTCACAG-CTGCTGCAGATGCCACCGAAAGGATCATGT-CATCTTATAAG  1096
      ||||||| |||||||||||| ||||||||||||||||| | |||||| ||
seq2  CTCACAGTCTGCTGCAGATG-CACCGAAAGGATCATGTCCTTCTTAT-AG  1091

seq1  GAGGTAACCCCAGTATAGCTCCTACTCT-GCTTGCTCTTCCACTCCTGAA  1145
      ||||| ||||||||| | ||||||  || |||||||||| |  | |||||
seq2  GAGGT-ACCCCAGTA-AACTCCTATCCTGGCTTGCTCTTTCCTTTCTGAA  1139

seq1  CTGGCTGGTATTGAGCCCATGTCACC  1171
      ||| |||| || | |  |||||||||
seq2  CTGCCTGGGATAG-GAGCATGTCACC  1164

seq1: chrX_71139248_71140285
seq2: B6Ng01-020P11.g_68_1091 (reverse)

seq1  TGTAGCTTAGCTGACTATCTAGGGTTGGCCCTGGGAGTACCAAGAAAGGG  50
      |||||| ||||||||||| ||||||  ||||| ||| |||| ||||||||
seq2  TGTAGC-TAGCTGACTATTTAGGGT--GCCCT-GGAATACC-AGAAAGGG  45

seq1  TACCTTGGTTATCCTTGGTCCTCCCTAGGTGACATTGTCCCCAGGTATAC  100
      || ||||  ||||||| ||||| ||||||||||| ||| |||||||||||
seq2  TA-CTTG--TATCCTT-GTCCT-CCTAGGTGACA-TGT-CCCAGGTATAC  88

seq1  AAGAAGGAAGGGTGTAAAGAAACCTTAACATTGGCTCCTTTGTTGCCAGA  150
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  AAGAAGGAAGGGTGTAAAGAAA-CTTAACA-TGGCTCCTTTGTTGCCAGA  136

seq1  CATGGGAAGCAACTGGGACAGATGCCTCAAGGTCTAGGAGGAGAATAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAGCAACTGGGACAGATGCCTCAAGGTCTAGGAGGAGAATAGGC  186

seq1  AACAGAGGCACTTGGGCTTCCCATTCTGGCAAGTACTCTGCAGGTGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGCACTTGGGCTTCCCATTCTGGCAAGTACTCTGCAGGTGAGGA  236

seq1  AGACTCCCAGGGAGCTGGAAGAAGGACCAGGATAGGACCAATAGACCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCAGGGAGCTGGAAGAAGGACCAGGATAGGACCAATAGACCTTC  286

seq1  CTGTCATTCCTCCCTCTGTCTGTCTCCCTAATAAAAGTTGCAGTTCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTCCTCCCTCTGTCTGTCTCCCTAATAAAAGTTGCAGTTCATTT  336

seq1  TCCACATGGAAAAAATTTCCTTGGACCAGGTATATGGTGGGCACAGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGGAAAAAATTTCCTTGGACCAGGTATATGGTGGGCACAGAAGC  386

seq1  TGAAATACAAAGATTCGCACACCCATAGACATACCTATGTTCAGGAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACAAAGATTCGCACACCCATAGACATACCTATGTTCAGGAATCT  436

seq1  GTGATATAAGCAACCAAGACTGTATTTTTGAGAGCAGGTCCCCAGGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATAAGCAACCAAGACTGTATTTTTGAGAGCAGGTCCCCAGGTGAA  486

seq1  AATAAACAGCTCCATGTCAACCTTCTGTCTTGGCATCTGGTCTCTAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGCTCCATGTCAACCTTCTGTCTTGGCATCTGGTCTCTAGCAG  536

seq1  TGCAGGCTCTGGGAGTTGCCCTGCACCCTACCTGTTCAGCGCCCCCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTCTGGGAGTTGCCCTGCACCCTACCTGTTCAGCGCCCCCCAAA  586

seq1  CAGCACAGGCTATTACAACAGCAACCAGCACATGGGGTCTTTATGAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGCTATTACAACAGCAACCAGCACATGGGGTCTTTATGAATTA  636

seq1  CTGCCACTTCCATATTTCACAGCCACAGCCCAAGGCTTCCAAGCAAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTTCCATATTTCACAGCCACAGCCCAAGGCTTCCAAGCAAAGGC  686

seq1  ATAAGAGGAGCTCATCTCCAGCTTCCTTCCTTTGCTACCTCCCAAGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGGAGCTCATCTCCAGCTTCCTTCCTTTGCTACCTCCCAAGAGAC  736

seq1  CTAGAAGAGGGCTGAGGTGAAGCAATAGGCCTATGTGGAATGGTGGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGAGGGCTGAGGTGAAGCAATAGGCCTATGTGGAATGGTGGGCTT  786

seq1  GGTGGTGGCTGCTGGAGGTAAGCTGCCTCAGACTGGCTTGCGAGTTGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGCTGCTGGAGGTAAGCTGCCTCAGACTGGCTTGCGAGTTGAAT  836

seq1  CTGGACCCTGGGGATGGGAGGTTGAGGGGGAAATTGGAGCCCCAGGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCCTGGGGATGGGAGGTTGAGGGGGAAATTGGAGCCCCAGGTCCC  886

seq1  CGGGAGAAGACTTTGTTTTTGCTGATGCTGCTGCAGGCCAGGGGCGTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGAAGACTTTGTTTTTGCTGATGCTGCTGCAGGCCAGGGGCGTCAG  936

seq1  AGTTCCTAGACTCGGGGAGGCTGTAGATGCTAACCCATGGCCCTGGCGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTAGACTCGGGGAGGCTGTAGATGCTAACCCATGGCCCTGGCGGA  986

seq1  CAGCAGTCTTTCCCAAGAGCTCCTTAAACACAGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTCTTTCCCAAGAGCTCCTTAAACACAGAATTC  1024