BAC Information

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BAC

Clone NameB6Ng01-021G20
ChromosomeX (Build37)12 (Build37)
Map Location 104,581,068 - 104,581,35532,631,616 - 32,631,836
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm784, Cysltr1, EG331493, LOC668490, LOC100042772, LOC100043263, Zcchc5, Gpr23, P2ry10, A630033H20Rik, Gpr174, LOC668502, LOC622613, LOC385404
Downstream geneItm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021G20.bB6Ng01-021G20.g
ACCDH853934DH853935
length288593
definitionDH853934|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G20, 5' end.DH853935|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,581,068 - 104,581,355)(32,631,616 - 32,631,836)
sequence
agttgtcagggattcagtatggtttttcttaaataggaaacaattattaa
ctgtctaccatgaagaagtaaataagctatttggtagaattagaaaagtt
ttggaggtaacatataccatacatgggttctgaactcaccatgtaaccca
caaggatgtcatattaagtatggttgaatgcaagaaatttgtcaacagca
tatatatatatatatatatatatatatatatatatatatatagtgttagt
tgtttgcttctatatatttatgatacatgaggcacaca
gaattcctcatgtttgtatttattaaatgtggtaaatcttgttcaaaaag
aaaataatttttaaaaagatatctaaagaacgaagaccaaagtgtgaaca
ctttgccccttcttagaattgggaacaaaacacgaatggaaggagttaca
gagacaaagtttggagctgagatgaaatgatggaccatctagagactgcc
acacccggggatccatgccataatcagccttcaaacgctgacaccattgc
atacaccagcaagattttactgaaaggaccctgatatatctgtctcttgt
gaggctatgccagtgcctggcaatcgcagaagtggatgatcagagtcatc
tattggttggaacacagggcccccaatggaggagctagagaaagtaccca
aagagctaaaggggtcttcaaccctataggtggaacaacaatatgaacta
accagtacccctggagctcgtgtttctagctgcatatgtagcagaagatg
gcctagtcggccatcatttagaagcgagaccccttggtcttgcaaacttc
atatgcctcagtacaggggaatgccagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_104581068_104581355
seq2: B6Ng01-021G20.b_51_338

seq1  AGTTGTCAGGGATTCAGTATGGTTTTTCTTAAATAGGAAACAATTATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCAGGGATTCAGTATGGTTTTTCTTAAATAGGAAACAATTATTAA  50

seq1  CTGTCTACCATGAAGAAGTAAATAAGCTATTTGGTAGAATTAGAAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTACCATGAAGAAGTAAATAAGCTATTTGGTAGAATTAGAAAAGTT  100

seq1  TTGGAGGTAACATATACCATACATGGGTTCTGAACTCACCATGTAACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGTAACATATACCATACATGGGTTCTGAACTCACCATGTAACCCA  150

seq1  CAAGGATGTCATATTAAGTATGGTTGAATGCAAGAAATTTGTCAACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGTCATATTAAGTATGGTTGAATGCAAGAAATTTGTCAACAGCA  200

seq1  TATATATATATATATATATATATATATATATATATATATATAGTGTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATAGTGTTAGT  250

seq1  TGTTTGCTACTTGAAAATTAGGACACATGAGGCACACA  288
      |||||||| ||  | | ||| || ||||||||||||||
seq2  TGTTTGCTTCTATATATTTATGATACATGAGGCACACA  288

seq1: chr12_32631616_32631836
seq2: B6Ng01-021G20.g_393_659 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATGAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| | ||| ||| |||   | |||                ||||
seq2  GCAAGACCAAGGGGTCTCGCTTCTAAATGATGGCCGACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      || |||||| ||||||||| ||||||||||| ||||||||||| ||||||
seq2  TGCTACATATGCAGCTAGAAACACGAGCTCCAGGGGTACTGGTTAGTTCA  150

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGAAGACCCCTTTAGCTCTTTGGGTAC  200

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
      |||||||| |||||||||||||| ||||||| ||| | ||||||| ||||
seq2  TTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCC-AACCAATAGATGAC  249

seq1  TGTGAGCATCCACTTCTG  221
      | ||| ||||||||||||
seq2  TCTGATCATCCACTTCTG  267