BAC Information

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BAC

Clone NameB6Ng01-022M22
ChromosomeX (Build37)4 (Build37)
Map Location 7,069,357 - 7,070,141149,948,408 - 149,948,558
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneShroom4, LOC100043937, Dgkk, Ccnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik
Downstream geneLOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022M22.bB6Ng01-022M22.g
ACCDH854908DH854909
length948348
definitionDH854908|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M22, 5' end.DH854909|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,069,357 - 7,070,141)(149,948,408 - 149,948,558)
sequence
gaattcaggcagagactccctcctagaccagagaccacactggcagccag
aaccgcagataggctgtccaccagcgggcttcctacactcacttagtgcc
ccaagcccccactcccctcctcattattgtgtctcactccctcaacttgg
gcagagacccccctgcttcaccaaaggcaaagctagccactagaggttca
gcccccaagttggacagagaatccctactggaggtcatgccggccaccag
aaacccaaaccacaaaggccagaagacgacagagtaaacagaaaccaagt
agcgaaacacctattcaacaaagacgaatgcagaaatcagcacctagaac
tataagcatcccaaacccagatgcctaaatgccagtgtaagaacacaaca
acagccagggcagtatggcaccaccagagcccagctatcctacatattta
gccctgcatatttcaatgcagctgaagcaaagaaaataaccttaaaacca
actttatgaagataacagaggtccttagagaggaaatgaataaatccctt
aaagaaatctatgacaagaccaaaaaataaataaaaatgaagtggaagaa
atcaataagtctcttgaagaatgccaagaaagccaagagaaaacaaacaa
gtgcaggaaattgttcgtgtcctgaaaatgaaaatagaggaataaagaaa
acacaaactgaaggaattctgggaatgcaaaatctaggtaatcgaacagg
atctacagatgcaagcatcaccaacagaatacaagagatggaagggagaa
tctcaaggtctgaacatatgatagaggaaatagattcatcagtcaaagaa
aatgtaaatctagaacattcgtaacacaaagtatccaggaatcagtagcc
ttcctatatacaaagcaaagactagcttggggaaaaataaagcagcaa
gaattcactctgtagaccaggctggcctggaactcatagaagtcgcctgt
ctctgcctccactacccagaaattcaagtctacctttaaattcatagttt
gaggctagcctgtgcaacatgaaagtcagcctcaaacaactcatttttgg
gctgggtgtggtggtgcagtcttcatcttagtactcaggaggcagaggca
agcagaggtctgtgagtttgaggccagtctggtctgagtagtgagttcca
ggacagccagggtcacataagtagatcctgtctcaaacaaaaccaaaacc
aaaaccaaccaactaactaaccaaccaaacaaaaaaacccaaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_7069357_7070141
seq2: B6Ng01-022M22.b_46_829

seq1  GAATTCAGGCAGAGACTCCCTCCTAGACCAGAGACCACACTGGCAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAGAGACTCCCTCCTAGACCAGAGACCACACTGGCAGCCAG  50

seq1  AACCGCAGATAGGCTGTCCACCAGCGGGCTTCCTACACTCACTTAGTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCAGATAGGCTGTCCACCAGCGGGCTTCCTACACTCACTTAGTGCC  100

seq1  CCAAGCCCCCACTCCCCTCCTCATTATTGTGTCTCACTCCCTCAACTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCCCACTCCCCTCCTCATTATTGTGTCTCACTCCCTCAACTTGG  150

seq1  GCAGAGACCCCCCTGCTTCACCAAAGGCAAAGCTAGCCACTAGAGGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACCCCCCTGCTTCACCAAAGGCAAAGCTAGCCACTAGAGGTTCA  200

seq1  GCCCCCAAGTTGGACAGAGAATCCCTACTGGAGGTCATGCCGGCCACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAAGTTGGACAGAGAATCCCTACTGGAGGTCATGCCGGCCACCAG  250

seq1  AAACCCAAACCACAAAGGCCAGAAGACGACAGAGTAAACAGAAACCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAACCACAAAGGCCAGAAGACGACAGAGTAAACAGAAACCAAGT  300

seq1  AGCGAAACACCTATTCAACAAAGACGAATGCAGAAATCAGCACCTAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAACACCTATTCAACAAAGACGAATGCAGAAATCAGCACCTAGAAC  350

seq1  TATAAGCATCCCAAACCCAGATGCCTAAATGCCAGTGTAAGAACACAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCATCCCAAACCCAGATGCCTAAATGCCAGTGTAAGAACACAACA  400

seq1  ACAGCCAGGGCAGTATGGCACCACCAGAGCCCAGCTATCCTACATATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGCAGTATGGCACCACCAGAGCCCAGCTATCCTACATATTTA  450

seq1  GCCCTGCATATTTCAATGCAGCTGAAGCAAAGAAAATAACCTTAAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCATATTTCAATGCAGCTGAAGCAAAGAAAATAACCTTAAAACCA  500

seq1  ACTTTATGAAGATAACAGAGGTCCTTAGAGAGGAAATGAATAAATCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGAAGATAACAGAGGTCCTTAGAGAGGAAATGAATAAATCCCTT  550

seq1  AAAGAAATCTATGACAAGACCAAAAAATAAATAAAAATGAAGTGGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCTATGACAAGACCAAAAAATAAATAAAAATGAAGTGGAAGAA  600

seq1  ATCAATAAGTCTCTTGAAGAATGCCAAGAAAGCCAAGAGAAAACAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAGTCTCTTGAAGAATGCCAAGAAAGCCAAGAGAAAACAAACAA  650

seq1  GTGCAGGAAATTGTTCGTGTCCTGAAAATGAAAATAGAGGAAATAAAGAA  700
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGCAGGAAATTGTTCGTGTCCTGAAAATGAAAATAGAGG-AATAAAGAA  699

seq1  AACACAAACTGAAGGAATTCTGGGAATGCAAAATCTAGGTAATCGAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAACTGAAGGAATTCTGGGAATGCAAAATCTAGGTAATCGAACAG  749

seq1  GATCTACAGATGCAAGCATCACCAACAGAATACAA  785
      |||||||||||||||||||||||||||||||||||
seq2  GATCTACAGATGCAAGCATCACCAACAGAATACAA  784

seq1: chr4_149948408_149948558
seq2: B6Ng01-022M22.g_286_416 (reverse)

seq1  TTTGTTTTGGGTTTTTTTGTTTTTTTTGTCTGTTTAGTTGGTTGGTTTTG  50
      ||||||||||||||||||||||  || || |  |||||||||||||||||
seq2  TTTGTTTTGGGTTTTTTTGTTTGGTTGGT-TAGTTAGTTGGTTGGTTTTG  49

seq1  GTTTTATTGGGGGGGGGTTGTTTTGTTTGAGACACATTTCTCATTTCTCT  100
      ||||             | |||||||||||||||        || |   |
seq2  GTTT-------------TGGTTTTGTTTGAGACA------GGATCTACTT  80

seq1  GTGTAACTCTGACTGTCCTGGAACTCACTCTGTAGATCAGACTGGCCTCA  150
       ||| || ||| |||||||||||||||||    ||| |||||||||||||
seq2  ATGTGACCCTGGCTGTCCTGGAACTCACTACTCAGACCAGACTGGCCTCA  130

seq1  A  151
      |
seq2  A  131