BAC Information

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BAC

Clone NameB6Ng01-022P02
Chromosome14 (Build37)X (Build37)
Map Location 80,387,175 - 80,388,26992,128,569 - 92,128,734
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734
Downstream geneOlfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022P02.bB6Ng01-022P02.g
ACCDH855007DH855008
length1,089880
definitionDH855007|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P02, 5' end.DH855008|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,387,175 - 80,388,269)(92,128,569 - 92,128,734)
sequence
gaattcactgacacagagaacaaaatggtggaatatcagagtaatgaaga
actgtgattccaaccactttttacactctagtgaacagggagccagggga
cttgggctctgagctcagctcccaccctggatgtcattagagaaatgaca
tttttttttcttgacccacctaacagctggctaagctgagcctctgagct
ctttgtctctagcaggctagaggacaggataaatgtggactgccttctag
ttgtgtccagcttaaatgttattttcatatcttcatattaagacaagact
tcattgcagacttcttctttcgcttgctggatttctgggctggatgcttt
ccttatttcccaagatagtttgtgctaagccacagtactttctcttctta
tcagagggaattctctcctcaggctagcctgagctcagacaggtgagcag
tgccttggccactttgtctgttctggacaattatacagtttagatcttaa
tcttcttgcttcaccttctcctgtgatcctttctgtactcagcatcaggt
atgtgggacaatggcattccccgattctgctctgacatgcctgtgttctg
cgaggtgaacaatggaagggcctcatggggtcaggatcaggaccctgagt
tcttagctctgctgccatccagtaggggatcttaaagaccctcattcttt
ctcctacagtttctttattcttcatttcagctgaggggcttagaaagtag
acagtcaagaagccttcctcagaatctcttaacaactctcatcctcatca
ggaggtagcctgttgtcttcactgtagctcacaaagccctcctggactgg
tccctctgctttgagtctaagttctcatcttcttctgtagactctatgtt
atggtctaataatgaataataataatgaacgttgtgaagctccagaacag
tcgttttctttctcagtctcagacactgcagacactcctcccgttgtcct
catctcctttcctgtccctcttctgagtctcagttcttgttgtggtcact
gctttgggagctcagactttacttctaaaggaaccctct
gaattctttgtacctcatttttaatggggttatttgttttcttgatgtcc
agggctttttgtttgtttgtttgattgattgattttggtttggttttttc
ttttttttgagtcttttatatattttgaatattagacctctatcaaatgt
gcagttgacaaaatcctttttctgtactgtagactgccactttgtacaaa
taactatttcttttgctatgtaccaacttttcactttcaggaggtccatt
tattgttgatcttattgccagctctcatagagagctagtgagttcaaagc
tattctcctcttcctcttctattaggtttagtgtatcaaattgtatatta
atctctttgattcacttgaggttgagttttgcgcaggtgataagtgtgga
tctgtttggattcctctgtgtgctcccaccaagtctggccagcaccattt
attcaagctgctttttcactgtctgtatttcttttttttttttttaatta
aaaaaatatcaggtgtttgtaggtgtctggatttatgtatgagtcttcaa
tttgattcaattgatcaactttaaggtattcgccaaaactatttgttttg
ttttgttttgttttgttttgttttgttttgttttattagtatagttttgt
actataatttgaagtcagggatggtgatgcttccaacagttcttgtactg
ttaaagactgttttggctatcctcatttttttttttgcatgtccatatga
agctgaaaattgcctttcaagatctgtgaagcattgtggtgaaattttga
cagagttgcattcaattggtagacggcttttgatagaatgtccattttta
ctataataatcttatgggcgtggggagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80387175_80388269
seq2: B6Ng01-022P02.b_45_1133

seq1  GAATTCACTGACACAGAGAACAAAATGGTGGAATATCAGAGTAATGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACACAGAGAACAAAATGGTGGAATATCAGAGTAATGAAGA  50

seq1  ACTGTGATTCCAACCACTTTTTACACTCTAGTGAACAGGGAGCCAGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATTCCAACCACTTTTTACACTCTAGTGAACAGGGAGCCAGGGGA  100

seq1  CTTGGGCTCTGAGCTCAGCTCCCACCCTGGATGTCATTAGAGAAATGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTCTGAGCTCAGCTCCCACCCTGGATGTCATTAGAGAAATGACA  150

seq1  TTTTTTTTTCTTGACCCACCTAACAGCTGGCTAAGCTGAGCCTCTGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTTGACCCACCTAACAGCTGGCTAAGCTGAGCCTCTGAGCT  200

seq1  CTTTGTCTCTAGCAGGCTAGAGGACAGGATAAATGTGGACTGCCTTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTCTAGCAGGCTAGAGGACAGGATAAATGTGGACTGCCTTCTAG  250

seq1  TTGTGTCCAGCTTAAATGTTATTTTCATATCTTCATATTAAGACAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCAGCTTAAATGTTATTTTCATATCTTCATATTAAGACAAGACT  300

seq1  TCATTGCAGACTTCTTCTTTCGCTTGCTGGATTTCTGGGCTGGATGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAGACTTCTTCTTTCGCTTGCTGGATTTCTGGGCTGGATGCTTT  350

seq1  CCTTATTTCCCAAGATAGTTTGTGCTAAGCCACAGTACTTTCTCTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTCCCAAGATAGTTTGTGCTAAGCCACAGTACTTTCTCTTCTTA  400

seq1  TCAGAGGGAATTCTCTCCTCAGGCTAGCCTGAGCTCAGACAGGTGAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGAATTCTCTCCTCAGGCTAGCCTGAGCTCAGACAGGTGAGCAG  450

seq1  TGCCTTGGCCACTTTGTCTGTTCTGGACAATTATACAGTTTAGATCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGCCACTTTGTCTGTTCTGGACAATTATACAGTTTAGATCTTAA  500

seq1  TCTTCTTGCTTCACCTTCTCCTGTGATCCTTTCTGTACTCAGCATCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCTTCACCTTCTCCTGTGATCCTTTCTGTACTCAGCATCAGGT  550

seq1  ATGTGGGACAATGGCATTCCCCGATTCTGCTCTGACATGCCTGTGTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGACAATGGCATTCCCCGATTCTGCTCTGACATGCCTGTGTTCTG  600

seq1  CGAGGTGAACAATGGAAGGGCCTCATGGGGTCAGGATCAGGACCCTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGAACAATGGAAGGGCCTCATGGGGTCAGGATCAGGACCCTGAGT  650

seq1  TCTTAGCTCTGCTGCCATCCAGTAGGGGATCTTAAAGACCCTCATTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTCTGCTGCCATCCAGTAGGGGATCTTAAAGACCCTCATTCTTT  700

seq1  CTCCTACAGTTTCTTTATTCTTCATTTCAGCTGAGGGGCTTAGAAAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACAGTTTCTTTATTCTTCATTTCAGCTGAGGGGCTTAGAAAGTAG  750

seq1  ACAGTCAAGAAGCCTTCCTCAGAATCTCTTAACAACTCTCATCCTCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAAGAAGCCTTCCTCAGAATCTCTTAACAACTCTCATCCTCATCA  800

seq1  GGAGGTAGCCTGTTGTCTTCACTGTAGCTCACAAAGCCCTCCTGGACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGCCTGTTGTCTTCACTGTAGCTCACAAAGCCCTCCTGGACTGG  850

seq1  TCCCTCTGCTTTGAGGTCTAAGTTCTCATCTTCTTCTGTAGACTCTATGT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCTTTGA-GTCTAAGTTCTCATCTTCTTCTGTAGACTCTATGT  899

seq1  TATGGTCTAATAATGAATAATAATAATGAACGTTGTGAAGCTCCCAGAAC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATGGTCTAATAATGAATAATAATAATGAACGTTGTGAAGCT-CCAGAAC  948

seq1  AGGTCGTTTTCTTTCTCAGTCTCAGACACTGCAGACACT-CTCCCTTTGT  999
      | ||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  A-GTCGTTTTCTTTCTCAGTCTCAGACACTGCAGACACTCCTCCCGTTGT  997

seq1  CCTCATCTCTTTTCCTGTCCCTCCTTCTGAGTCTCAGTTCTTGTTGTTGT  1049
      ||||||||| |||||||||||| |||||||||||||||||||||||| ||
seq2  CCTCATCTCCTTTCCTGTCCCT-CTTCTGAGTCTCAGTTCTTGTTGTGGT  1046

seq1  CACTTGCTTTGGGAAGCTCAGACTTTACTTCCTAAAGGAACTCTCT  1095
      ||| ||||||||| |||||||||||||||| |||||||||| ||||
seq2  CAC-TGCTTTGGG-AGCTCAGACTTTACTT-CTAAAGGAACCCTCT  1089

seq1: chrX_92128569_92128734
seq2: B6Ng01-022P02.g_123_513

seq1  TTTTTGTTTGTTTGTTTGATTGATTGA------------------TTTTT  32
      |||||||||||||||||||||||||||                  |||||
seq2  TTTTTGTTTGTTTGTTTGATTGATTGATTTTGGTTTGGTTTTTTCTTTTT  50

seq1  TTCGAG------AAAGTGTTT-----------CTC-------TGTG----  54
      || |||      | |   |||           |||       ||||    
seq2  TTTGAGTCTTTTATATATTTTGAATATTAGACCTCTATCAAATGTGCAGT  100

seq1  -----TAACCC--TGGCTGTCCTGGA-ACT--CACTCTGTA-----GACC  89
            || ||  |  |||| ||| | |||  |||| ||||      || 
seq2  TGACAAAATCCTTTTTCTGTACTGTAGACTGCCACTTTGTACAAATAACT  150

seq1  A-------GGCTGGCTTCAAAC---------TCAGAA-------------  110
      |        |||   | | |||         |||| |             
seq2  ATTTCTTTTGCTATGTACCAACTTTTCACTTTCAGGAGGTCCATTTATTG  200

seq1  ---AT----TTGCCTGCCTCTGCCCACCAAGTGCTGGT--ATTAAAGGTG  151
         ||    ||||| | ||||   ||   || ||| ||   || || |  
seq2  TTGATCTTATTGCCAG-CTCT---CATAGAGAGCTAGTGAGTTCAAAGCT  246

seq1  AGTGCCACCAGCACC-----------------------------------  166
      | |  | ||    ||                                   
seq2  ATT--CTCCTCTTCCTCTTCTATTAGGTTTAGTGTATCAAATTGTATATT  294

seq1  --------------------------------------------------  166
                                                        
seq2  AATCTCTTTGATTCACTTGAGGTTGAGTTTTGCGCAGGTGATAAGTGTGG  344

seq1  -----------------------------------------------  166
                                                     
seq2  ATCTGTTTGGATTCCTCTGTGTGCTCCCACCAAGTCTGGCCAGCACC  391