BAC Information

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BAC

Clone NameB6Ng01-023A08
ChromosomeX (Build37)
Map Location 88,031,166 - 88,168,636
singlet/doubletdoublet
Overlap geneLOC100041815, Gm44
Upstream geneLOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615, LOC629471
Downstream geneLOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023A08.bB6Ng01-023A08.g
ACCDH855061DH855062
length7431,159
definitionDH855061|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A08, 5' end.DH855062|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,168,106 - 88,168,636)(88,031,166 - 88,032,351)
sequence
aagtggaacacatatataaaaatagataaatagaaaaatatattaaattg
gaaggttataggaagtatgagttgcagaaaaagtaaatttattaataagg
atctccttgagaaacagaaataatagaatgaatatttttaaatggggatt
tattagagtggtttataccatactgttggaaatctgagaagccagtagct
gctaagttcactaagggagatgcttcaatagttctgatcagtactgcagg
tctgtaagatcccttcagaatcattgttattcaatctttgttggaacatt
aaggtagcaagtttcttatgtcagtgaaaataacagtagtaacaacacca
atagagtagatgtattcatcagcaaggaaaatgctaggcaagcaaaagag
gtaccaaatttccatcaggcctccttatatatgagctgagtccaaatgtg
ctattcactcagagggagggtctttcttccttgtttatatgtccattaaa
taccctcacaaatttaactaagggtctgtttcctaggtgattccacatta
aattaacttaacaaataaagattaaccatcacaattaagttgctaggaaa
aaagtcgccaaaaagatattagattagaaatttctagaaaatgagaaatc
aagccatagagacatctagcagcacattccaggtacacatacaaggccct
gaattaagaatagaatgtgctgacatactcgggaaaaagagga
gaattccttaactaatgacttatttccttcatttatggagatatgaccat
atgtacaggactgttttatgctatgatcttgactattctcttaattctgc
ctccctcttttacttataaggactatgataattaaactgaaactataaaa
ctaatccaaggtgttctccccatgtcacagttagttgaaatgaaatctta
actgcattttcaactttatctcccttctatactaaaacctaactttaaat
agcttctaggaattaagatacagacaattttgtgtattcctgtctatact
tacctcaaatggcactttccaattaataacactattaatgatattacaag
gtattattatgcatgctactgtattagatacattgccatagaaatgtata
cacatatatgtgtacttatataagtacttattcacacacatatgtagata
aatatatagattatatatagagagatacattcatttatagatataggaat
agagagatatatatcatatgatatatatcagcaaactaccaagattgttt
tttggttttcaagctgaatatattttaatcacgatatgaacgttcaatta
atatgaattttctcatcagaaaaagttgtaggtaatagtataatctatat
taatatttgtgagcatttaatgaaatactatccataaaaccttattgtat
ttaaggaattatatatatattgactgttgatgattatatgagtatcattt
cttgtagttatactaaaatgtttgtgcttctgttatataatcaaatttta
aatgtctacctcagatgagttttactttagtattatgttacataatattt
ttggaaggaattttcaaactatgcatcaaattatactgaatctaatgtat
tagaatcattgtgaagtaaaaatacaaatcattcaataataactgtattt
tcaaataaaattttctctagcaaatctcaaagcacattttttattggaaa
tgagtacatgttttggtgggttttttatattttttcatagtactactcat
tgctaacaaaaacctttcattcattcaatcatgtataatacaactaaata
cataagtaatactactatctttgacatatttcattgtgtccaaccgtttg
atattacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_88168106_88168636
seq2: B6Ng01-023A08.b_41_571 (reverse)

seq1  AAACAGACCCTTAGTTAAATTTGTGAGGGTATTTAATGGACATATAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACCCTTAGTTAAATTTGTGAGGGTATTTAATGGACATATAAACA  50

seq1  AGGAAGAAAGACCCTCCCTCTGAGTGAATAGCACATTTGGACTCAGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGACCCTCCCTCTGAGTGAATAGCACATTTGGACTCAGCTCA  100

seq1  TATATAAGGAGGCCTGATGGAAATTTGGTACCTCTTTTGCTTGCCTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGGAGGCCTGATGGAAATTTGGTACCTCTTTTGCTTGCCTAGCA  150

seq1  TTTTCCTTGCTGATGAATACATCTACTCTATTGGTGTTGTTACTACTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGCTGATGAATACATCTACTCTATTGGTGTTGTTACTACTGTT  200

seq1  ATTTTCACTGACATAAGAAACTTGCTACCTTAATGTTCCAACAAAGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTGACATAAGAAACTTGCTACCTTAATGTTCCAACAAAGATTG  250

seq1  AATAACAATGATTCTGAAGGGATCTTACAGACCTGCAGTACTGATCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATGATTCTGAAGGGATCTTACAGACCTGCAGTACTGATCAGAA  300

seq1  CTATTGAAGCATCTCCCTTAGTGAACTTAGCAGCTACTGGCTTCTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAAGCATCTCCCTTAGTGAACTTAGCAGCTACTGGCTTCTCAGAT  350

seq1  TTCCAACAGTATGGTATAAACCACTCTAATAAATCCCCATTTAAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACAGTATGGTATAAACCACTCTAATAAATCCCCATTTAAAAATAT  400

seq1  TCATTCTATTATTTCTGTTTCTCAAGGAGATCCTTATTAATAAATTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTATTATTTCTGTTTCTCAAGGAGATCCTTATTAATAAATTTACT  450

seq1  TTTTCTGCAACTCATACTTCCTATAACCTTCCAATTTAATATATTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCAACTCATACTTCCTATAACCTTCCAATTTAATATATTTTTCT  500

seq1  ATTTATCTATTTTTATATATGTGTTCCACTT  531
      |||||||||||||||||||||||||||||||
seq2  ATTTATCTATTTTTATATATGTGTTCCACTT  531

seq1: chrX_88031166_88032351
seq2: B6Ng01-023A08.g_68_1226

seq1  GAATTCCTTAACTAATGACTTATTTCCTTCATTTATGGAGATATGACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAACTAATGACTTATTTCCTTCATTTATGGAGATATGACCAT  50

seq1  ATGTACAGGACTGTTTTATGCTATGATCTTGACTATTCTCTTAATTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGGACTGTTTTATGCTATGATCTTGACTATTCTCTTAATTCTGC  100

seq1  CTCCCTCTTTTACTTATAAGGACTATGATAATTAAACTGAAACTATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTTTTACTTATAAGGACTATGATAATTAAACTGAAACTATAAAA  150

seq1  CTAATCCAAGGTGTTCTCCCCATGTCACAGTTAGTTGAAATGAAATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCAAGGTGTTCTCCCCATGTCACAGTTAGTTGAAATGAAATCTTA  200

seq1  ACTGCATTTTCAACTTTATCTCCCTTCTATACTAAAACCTAACTTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTTCAACTTTATCTCCCTTCTATACTAAAACCTAACTTTAAAT  250

seq1  AGCTTCTAGGAATTAAGATACAGACAATTTTGTGTATTCCTGTCTATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTAGGAATTAAGATACAGACAATTTTGTGTATTCCTGTCTATACT  300

seq1  TACCTCAAATGGCACTTTCCAATTAATAACACTATTAATGATATTACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAAATGGCACTTTCCAATTAATAACACTATTAATGATATTACAAG  350

seq1  GTATTATTATGCATGCTACTGTATTAGATACATTGCCATAGAAATGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTATGCATGCTACTGTATTAGATACATTGCCATAGAAATGTATA  400

seq1  CACATATATGTGTACTTATATAAGTACTTATTCACACACATATGTAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATGTGTACTTATATAAGTACTTATTCACACACATATGTAGATA  450

seq1  AATATATAGATTATATATAGAGAGATACATTCATTTATAGATATAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGATTATATATAGAGAGATACATTCATTTATAGATATAGGAAT  500

seq1  AGAGAGATATATATCATATGATATATATCAGCAAACTACCAAGATTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATATATATCATATGATATATATCAGCAAACTACCAAGATTGTTT  550

seq1  TTTGGTTTTCAAGCTGAATATATTTTAATCACGATATGAACGTTCAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTCAAGCTGAATATATTTTAATCACGATATGAACGTTCAATTA  600

seq1  ATATGAATTTTCTCATCAGAAAAAGTTGTAGGTAATAGTATAATCTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTTTCTCATCAGAAAAAGTTGTAGGTAATAGTATAATCTATAT  650

seq1  TAATATTTGTGAGCATTTAATGAAATACTATCCATAAAACCTTATTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGTGAGCATTTAATGAAATACTATCCATAAAACCTTATTGTAT  700

seq1  TTAAGGAATTATATATATATTGACTGTTGATGATTATATGAGTATCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAATTATATATATATTGACTGTTGATGATTATATGAGTATCATTT  750

seq1  CTTGTAGTTATACTAAAATGTTTGTGCTTCTGTTATATAATCAAATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGTTATACTAAAATGTTTGTGCTTCTGTTATATAATCAAATTTTA  800

seq1  AATGTCTACCTCAGATGAGTTTTACTTTAGTATTATGTTACATAATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTACCTCAGATGAGTTTTACTTTAGTATTATGTTACATAATATTT  850

seq1  TTGGAAGGAAATTTTCAAACTATGCATCAAATTATACTGAATCTAAATGT  900
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  TTGGAAGG-AATTTTCAAACTATGCATCAAATTATACTGAATCT-AATGT  898

seq1  ATTAGAATCATTGTGAAGTAAAAAATACAAAATCATTCAATAATAACTGT  950
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  ATTAGAATCATTGTGAAGT-AAAAATAC-AAATCATTCAATAATAACTGT  946

seq1  ATTTTCAAATAAAATTTTCTCTAGCAAATCTCAAAGCACATTTTTTTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  ATTTTCAAATAAAATTTTCTCTAGCAAATCTCAAAGCACATTTTTT--AT  994

seq1  TGAAAATGAGTACATGTTTT-GTGGGTTTTTTATATTTTTTCATAGTAAC  1049
      || ||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  TGGAAATGAGTACATGTTTTGGTGGGTTTTTTATATTTTTTCATAGT-AC  1043

seq1  TACTCATTGCTTAACAAAAAACTTTTCAAATTCAATTTCAAATTCATGTA  1099
      |||||||||| ||||||||| ||||    |||||  |||||  |||||||
seq2  TACTCATTGC-TAACAAAAACCTTT---CATTCA--TTCAA--TCATGTA  1085

seq1  TAATTACAACTAAAATAACATTAAGTAAATAACTACTATCTTTAGACATA  1149
      ||| ||||||||||   ||| |||||||   |||||||||||| ||||| 
seq2  TAA-TACAACTAAA--TACA-TAAGTAA--TACTACTATCTTT-GACAT-  1127

seq1  ATTTCATTTGTTTTCACAATCTGTTTGATATATACAA  1186
      |||||| |||| |   | | | ||||||||| |||||
seq2  ATTTCA-TTGTGT---CCAACCGTTTGATAT-TACAA  1159