BAC Information

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BAC

Clone NameB6Ng01-023E11
Chromosome4 (Build37)X (Build37)
Map Location 7,948,659 - 7,949,25942,610,293 - 42,610,841
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023E11.bB6Ng01-023E11.g
ACCDH855243DH855244
length601956
definitionDH855243|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E11, 5' end.DH855244|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,948,659 - 7,949,259)(42,610,293 - 42,610,841)
sequence
gaattcaactgcatagattccatggcagtgttcatgtatagataccatgc
tactttcagggcataataagaatgaactactctgatgtgacaaagagctg
ccatagtctcaaaatgcagcacttggacatcagactctcagaacatccct
tgaagttcttctggttagctcccatttcctagcttggtgctaacatgtaa
gcaatgtgtcttgagatatatcttactaattttccatggcaacgactcac
tcacaaacaagaatatagcaactaaatataggccagcaatgactaaggta
attgtcttttgttttctaagtgacaaagctccactttgactcctatgtac
aatatgaatgagagtcttaaatgctataaagccctgaaagttaactgagc
atgctatctttacatggtatagagtatgcatacactttgtggtggttgca
aaaggtggatgaaagttctgactccaggtaagtattttaatcttaattat
tttcttaatttaaataatatattgatgggtgttttacctacatgtgtagc
acagtgcctacctaggccagagactgtctcaaaattcctgtgaaactaaa
a
gaattcaataactcacttaaagaaatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaaatgaacaaaatcatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcga
cgctggagatagaaaccctaggaaagaaatctggaaccatagatttgagc
atcagcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
ctccatagagaacatcggcacaacaatcaaagaaaatgaaaatgctattc
cagacaaatttgcaaattgatccttccaattcgttgaagaattgagttgg
aattttgatggggattgcattgaatctgtagattgcttttggcaagatag
ccatttttacaatgttgatcctgccaatccatgagcatgggagatctttc
catcttctgagatcttctttaatttctttcttcagagatttgaagttttt
atcatacagatctttcacctccttagttagagtcacgccaagatatttta
tattatttgtgactattgagaagggtgttgtttccctaatttctttctca
gcctgtttattctttgtatagagaaaggccattgacttgtttgagtttat
tttatatccagctacttcaccgaagctgtttatcagtttaggagttctct
ggtagaattttagggtcacttatatatactatcatatcatctgcaaaagt
gatatttgactttctcttttcaatttgtatccccttgatctcatttgtgc
gaatgctctgctatacttcaagtactatgtgaaagaggagaaagtggcgg
ccttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_7948659_7949259
seq2: B6Ng01-023E11.b_33_633 (reverse)

seq1  TTTTAGTTTCACAGGAATTCTGAGACAGTCTCTGGCCTTGGTAGGCACTG  50
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TTTTAGTTTCACAGGAATTTTGAGACAGTCTCTGGCCTAGGTAGGCACTG  50

seq1  TGCTACACATGTAGGTAAAACACCCATCAATATATTATTTAAATTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACACATGTAGGTAAAACACCCATCAATATATTATTTAAATTAAGAA  100

seq1  AATAATTAAGATTAAAATACTTACCTGGAGTCAGAACTTTCATCCACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAGATTAAAATACTTACCTGGAGTCAGAACTTTCATCCACCTT  150

seq1  TTGCAACCACCACAAAGTGTATGCATACTCTATACCATGTAAAGATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACCACCACAAAGTGTATGCATACTCTATACCATGTAAAGATAGCA  200

seq1  TGCTCAGTTAACTTTCAGGGCTTTATAGCATTTAAGACTCTCATTCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTTAACTTTCAGGGCTTTATAGCATTTAAGACTCTCATTCATAT  250

seq1  TGTACATAGGAGTCAAAGTGGAGCTTTGTCACTTAGAAAACAAAAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAGGAGTCAAAGTGGAGCTTTGTCACTTAGAAAACAAAAGACAA  300

seq1  TTACCTTAGTCATTGCTGGCCTATATTTAGTTGCTATATTCTTGTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAGTCATTGCTGGCCTATATTTAGTTGCTATATTCTTGTTTGTG  350

seq1  AGTGAGTCGTTGCCATGGAAAATTAGTAAGATATATCTCAAGACACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCGTTGCCATGGAAAATTAGTAAGATATATCTCAAGACACATTG  400

seq1  CTTACATGTTAGCACCAAGCTAGGAAATGGGAGCTAACCAGAAGAACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGTTAGCACCAAGCTAGGAAATGGGAGCTAACCAGAAGAACTTC  450

seq1  AAGGGATGTTCTGAGAGTCTGATGTCCAAGTGCTGCATTTTGAGACTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGTTCTGAGAGTCTGATGTCCAAGTGCTGCATTTTGAGACTATG  500

seq1  GCAGCTCTTTGTCACATCAGAGTAGTTCATTCTTATTATGCCCTGAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTTTGTCACATCAGAGTAGTTCATTCTTATTATGCCCTGAAAGT  550

seq1  AGCATGGTATCTATACATGAACACTGCCATGGAATCTATGCAGTTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTATCTATACATGAACACTGCCATGGAATCTATGCAGTTGAATT  600

seq1  C  601
      |
seq2  C  601

seq1: chrX_42610293_42610841
seq2: B6Ng01-023E11.g_491_1023 (reverse)

seq1  ACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTAT  50
      ||||||| | |||||||||     ||| ||  ||||||||||||||||| 
seq2  ACAAGGCCG-CCACTTTCT-----CCTCTTTCACATAGTACTTGAAGTA-  43

seq1  TAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGA  100
      ||| |||||| ||||| ||   ||| ||||||||||||||||||||| ||
seq2  TAG-CAGAGC-ATTCG-CA--CAAATGAGATCAAGGGGATACAAATT-GA  87

seq1  AAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATAT  150
      |||||| ||||| ||||||||| |||||||||||||||||||||||||||
seq2  AAAGAGAAAGTC-AAATATCAC-TTTTGCAGATGATATGATAGTATATAT  135

seq1  AAGTGACCCTAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTT  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGTGACCCTAAAATTCTACCAGAGAACTCCTAAA-CTGATAAACAGCTT  184

seq1  CGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTC  234

seq1  TCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCC  284

seq1  TTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAA  334

seq1  GGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAA  384

seq1  TTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGC  434

seq1  AGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATT  484

seq1  CAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAA  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAA  533