BAC Information

Click to search

BAC

Clone NameB6Ng01-023K05
ChromosomeX (Build37)
Map Location 94,206,928 - 94,340,024
singlet/doubletdoublet
Overlap geneLOC668238, Pgr15l
Upstream geneMsn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik, Heph, Gpr165, LOC675824, LOC668234, EG668236
Downstream geneEda2r, LOC668244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023K05.bB6Ng01-023K05.g
ACCDH855502DH855503
length968975
definitionDH855502|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K05, 5' end.DH855503|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,206,928 - 94,207,900)(94,339,221 - 94,340,024)
sequence
gaattctgtatatgtgaaacacttagttcaattctcagtacttcaaaaat
aaaaataaaacaaaacagcaggaaaaaaaactagaaaattgaaagtcaga
gcacatgatttttattccactaattctttcaacattttgttttgtgttat
tccacctctgtcttagatcttaattgtgttttctggttcttgattatcta
tctatctatctatctatctatctatctatctatctatctatctgcctatc
tatatatacatccatacattaatatccatccatccatctatatacccatt
catctatctatcctgaaatatccttcgatactaaaacagggctgatctgt
agcttgctttataatatgttttcatatccatgattccattttgttcccca
aaagtaaaattacagactgcactgccagacttgactaaatatctgctatc
acaataacaatccccccgcctattttcttatcatttcttcttcattttat
attatacatttgtaaaatgatatttatattctgtcatttgtattttcaat
ttcttctcattctctagtcattttcagtctaacttatcatcctatcattc
catgaacttgttttggaaattgtagtcttgatttacatggcaactactct
cctctgaattttgttaaacctccatagattttattcatcaatattcatga
aatcctcttaatctaatgattttcaaattgctgtgtccagggtatgtact
tgacttctatgatttctatgtatatcctacaggtgtccctacccatggtt
ctaactaacagcaatagcttgctaatctatacatgttgggtatctaggac
agatttctcctcttgtctctacttagatagttcacagactaaatgtatat
aatatgagctatttcatgccaccatagctccttcttttatatcacataca
tagagcagtcaagttaga
gaattcagaaaggttaatgaaaattctttagtcaaaaaagcataaactaa
atttgtggggaaaggagtcaagaaagcttaaaatacataagacaaaacaa
tgacaaaagaaacaaagatatttactcatccaactgacatatcaattgat
atatgcttcataataactagcatagctataaaatccagatgttcaggaac
agattaatatataaagaaggtataataaaaatacacgggtggtactgagt
atttagaaaattgataatcctgtaacatgcaccaatactatggatgaact
agacattgctctatgtgcggcaatccagacattctgtgagatttcactta
tggggtacatgaagtagccaagatcacatgaacagagaattggtgagata
tcacagaatgcagtaaagatgttattctttagatagaaagctttagttat
ataagatatactagtgtagagaccaaccttagacttagagttcacaatat
tgtattataaacttaaaattagacctcacattaaatgttcacagaatgtc
ttaggtttttactattgtgaagagccaccatgagcaagggaactcttata
aggatgacatttaattggggctggcttacaagttcagaggttcagtccat
tatcgtcaaggtaggaacatggcagtatctaggcaggcatgatgcaggca
gagctgagagttctacattttcctctgaaagctgctagcagaatactggc
ttccaggaggctaggataagattcttaaagcccacacccactgtgataca
cctactccaacaaggctgcaactccaaatagtgccattctctgggccaat
catattcaaactaagacagtgcaataaaaaagaggatatctaaactcaag
agtcaaaattttgattttagggaataataaaaatatagtataaagcaatc
ctacaattacaaatagatcagaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_94206928_94207900
seq2: B6Ng01-023K05.b_39_1006

seq1  GAATTCTGTATATGTGAAACACTTAGTTCAATTCTCAGTACTTCAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATATGTGAAACACTTAGTTCAATTCTCAGTACTTCAAAAAT  50

seq1  AAAAATAAAACAAAACAGCAGGAAAAAAAACTAGAAAATTGAAAGTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAACAAAACAGCAGGAAAAAAAACTAGAAAATTGAAAGTCAGA  100

seq1  GCACATGATTTTTATTCCACTAATTCTTTCAACATTTTGTTTTGTGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGATTTTTATTCCACTAATTCTTTCAACATTTTGTTTTGTGTTAT  150

seq1  TCCACCTCTGTCTTAGATCTTAATTGTGTTTTCTGGTTCTTGATTATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCTGTCTTAGATCTTAATTGTGTTTTCTGGTTCTTGATTATCTA  200

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGCCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGCCTATC  250

seq1  TATATATACATCCATACATTAATATCCATCCATCCATCTATATACCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACATCCATACATTAATATCCATCCATCCATCTATATACCCATT  300

seq1  CATCTATCTATCCTGAAATATCCTTCGATACTAAAACAGGGCTGATCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCTATCCTGAAATATCCTTCGATACTAAAACAGGGCTGATCTGT  350

seq1  AGCTTGCTTTATAATATGTTTTCATATCCATGATTCCATTTTGTTCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTTTATAATATGTTTTCATATCCATGATTCCATTTTGTTCCCCA  400

seq1  AAAGTAAAATTACAGACTGCACTGCCAGACTTGACTAAATATCTGCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAATTACAGACTGCACTGCCAGACTTGACTAAATATCTGCTATC  450

seq1  ACAATAACAATCCCCCCGCCTATTTTCTTATCATTTCTTCTTCATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACAATCCCCCCGCCTATTTTCTTATCATTTCTTCTTCATTTTAT  500

seq1  ATTATACATTTGTAAAATGATATTTATATTCTGTCATTTGTATTTTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACATTTGTAAAATGATATTTATATTCTGTCATTTGTATTTTCAAT  550

seq1  TTCTTCTCATTCTCTAGTCATTTTCAGTCTAACTTATCATCCTATCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCATTCTCTAGTCATTTTCAGTCTAACTTATCATCCTATCATTC  600

seq1  CATGAACTTGTTTTGGAAATTGTAGTCTTGATTTACATGGCAACTACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTTGTTTTGGAAATTGTAGTCTTGATTTACATGGCAACTACTCT  650

seq1  CCTCTGAATTTTGTTAAACCTCCATAGATTTTATTCATCAATATTCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAATTTTGTTAAACCTCCATAGATTTTATTCATCAATATTCATGA  700

seq1  AATCCTCTTAATCTAATGATTTTCAAATTGCTGTGTCCAGGGTATGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTTAATCTAATGATTTTCAAATTGCTGTGTCCAGGGTATGTACT  750

seq1  TGACTTCTATGATTTCTATGTATATCCTACATGGTGTCCTTACCCATGGT  800
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TGACTTCTATGATTTCTATGTATATCCTACA-GGTGTCCCTACCCATGGT  799

seq1  TCTAACTAACAGCAATAGCTTGCTAATCTATACATGTT-GGTATCTAGGA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTAACTAACAGCAATAGCTTGCTAATCTATACATGTTGGGTATCTAGGA  849

seq1  CAGATTTCTCCTCTTGTCTCTACTTAGATAGTTCACAGACTAAATGTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTCCTCTTGTCTCTACTTAGATAGTTCACAGACTAAATGTATA  899

seq1  TAAATATGAGCTTATTTTCATGCCACCATAGCTCCTTCTTTTATATCACA  949
      | ||||||||||   |||||||||||||||||||||||||||||||||||
seq2  T-AATATGAGCT--ATTTCATGCCACCATAGCTCCTTCTTTTATATCACA  946

seq1  TACATTAGAGCAGTACAAGTTAGA  973
      |||| ||||||||| |||||||||
seq2  TACA-TAGAGCAGT-CAAGTTAGA  968

seq1: chrX_94339221_94340024
seq2: B6Ng01-023K05.g_68_871 (reverse)

seq1  TAGGTGTATCACAGTGGGTGTGGGCTTTAAGAATCTTATCCTAGCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTATCACAGTGGGTGTGGGCTTTAAGAATCTTATCCTAGCCTCCT  50

seq1  GGAAGCCAGTATTCTGCTAGCAGCTTTCAGAGGAAAATGTAGAACTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAGTATTCTGCTAGCAGCTTTCAGAGGAAAATGTAGAACTCTCA  100

seq1  GCTCTGCCTGCATCATGCCTGCCTAGATACTGCCATGTTCCTACCTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTGCATCATGCCTGCCTAGATACTGCCATGTTCCTACCTTGAC  150

seq1  GATAATGGACTGAACCTCTGAACTTGTAAGCCAGCCCCAATTAAATGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGACTGAACCTCTGAACTTGTAAGCCAGCCCCAATTAAATGTCA  200

seq1  TCCTTATAAGAGTTCCCTTGCTCATGGTGGCTCTTCACAATAGTAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATAAGAGTTCCCTTGCTCATGGTGGCTCTTCACAATAGTAAAAAC  250

seq1  CTAAGACATTCTGTGAACATTTAATGTGAGGTCTAATTTTAAGTTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACATTCTGTGAACATTTAATGTGAGGTCTAATTTTAAGTTTATAA  300

seq1  TACAATATTGTGAACTCTAAGTCTAAGGTTGGTCTCTACACTAGTATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATTGTGAACTCTAAGTCTAAGGTTGGTCTCTACACTAGTATATC  350

seq1  TTATATAACTAAAGCTTTCTATCTAAAGAATAACATCTTTACTGCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAACTAAAGCTTTCTATCTAAAGAATAACATCTTTACTGCATTCT  400

seq1  GTGATATCTCACCAATTCTCTGTTCATGTGATCTTGGCTACTTCATGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATCTCACCAATTCTCTGTTCATGTGATCTTGGCTACTTCATGTAC  450

seq1  CCCATAAGTGAAATCTCACAGAATGTCTGGATTGCCGCACATAGAGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAGTGAAATCTCACAGAATGTCTGGATTGCCGCACATAGAGCAAT  500

seq1  GTCTAGTTCATCCATAGTATTGGTGCATGTTACAGGATTATCAATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTTCATCCATAGTATTGGTGCATGTTACAGGATTATCAATTTTCT  550

seq1  AAATACTCAGTACCACCCGTGTATTTTTATTATACCTTCTTTATATATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCAGTACCACCCGTGTATTTTTATTATACCTTCTTTATATATTA  600

seq1  ATCTGTTCCTGAACATCTGGATTTTATAGCTATGCTAGTTATTATGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCCTGAACATCTGGATTTTATAGCTATGCTAGTTATTATGAAGC  650

seq1  ATATATCAATTGATATGTCAGTTGGATGAGTAAATATCTTTGTTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCAATTGATATGTCAGTTGGATGAGTAAATATCTTTGTTTCTTTT  700

seq1  GTCATTGTTTTGTCTTATGTATTTTAAGCTTTCTTGACTCCTTTCCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTTTTGTCTTATGTATTTTAAGCTTTCTTGACTCCTTTCCCCAC  750

seq1  AAATTTAGTTTATGCTTTTTTGACTAAAGAATTTTCATTAACCTTTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGTTTATGCTTTTTTGACTAAAGAATTTTCATTAACCTTTCTGA  800

seq1  ATTC  804
      ||||
seq2  ATTC  804