BAC Information

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BAC

Clone NameB6Ng01-024A18
ChromosomeX (Build37)
Map Location 166,156,925 - 166,259,575
singlet/doubletdoublet
Overlap geneMid1, 4933400A11Rik
Upstream geneArhgap6, Amelx, Hccs, LOC100040950, BC022960
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024A18.bB6Ng01-024A18.g
ACCDH855795DH855796
length1,0531,162
definitionDH855795|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A18, 5' end.DH855796|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,258,534 - 166,259,575)(166,156,925 - 166,158,091)
sequence
gaattcaatagctaaacaaaccagccaatcagtgagctctaggttcggtg
acatacactggctcataaaataaggtggatacatatcccgagacacctag
tattaatctcttgcctccacaatgcatgtgcacgcacacacatgaaccta
catgcagatgtgcatatacccatactaatatgtatatatactacacacac
acacaaattgggttaaatgatggacattcaaattataataaattcttagt
gggcatataagcaaacatgctgccactttctaaaaataatttttgctttt
aacatacttagcaagcacatgttgaatatgaattttgtggttacaattat
gtctaaaacattctatgagaggctacatcaaaatgttaatattgttatta
gttctataaaatgttggatttgattttttgttgtagtttattgttttttg
ttttttcaaggcagggtttctctctatagccctggctgtcctggagcttg
cttcttaaaccaggttggtctcaaactcagagaatgacctgcctcattaa
cctgagtgctggtattaaaggcatgcatcacatgcctggctcaaaattga
acttaaaaaaaaaagcaagttcataatttttacaaagaatgcacagaata
ttgagacacactttcagatcaacctcaaaggataataacctgagttgagt
tttaagaacgtcgacctgattcttttgttagctgattaaaagctaattag
cacactctatagtaaaggacacttttttttctctacttgttggaacaatt
tattgctgagctagctgtaggagttgaccagtggaaatatataaagcatt
ttaggaatatgaacagacaaatttttgtttcatttgtgaaaaaaggacac
ttttcaatataaagaacattagaaagaaagtggtgagttcccttataccc
agcatcagagttgagagacgacatatttgagcttcgacaacttggggtga
catgacatgacctgtccaatataataatgatggctagcagtaataagaag
taa
gaattcattaattaacgaccttagctttttgtttggtgtggttaatttca
tgtattttaattttatagctatgtaaaaacagaaccaaatatttagtctg
aaattaaacagagtagtttgaatttttctgctctcatttcttgtaaatag
caagcattttttttcacaaaaaaattgttgattcattcagaagtctaaaa
tcttgcatgaaattaaaggaaagttctgttatacaaagcaaaaatacgct
tctgccaggaaaagtgccatccataaataaataaataaataataaagttc
caggtctgtttttaatctcacatttagttaaggcacggttctgatagagg
tagtgaactgccaaaggaaaatgctttcctgctgctgaagaaatgatgag
gcaggcagggggtttatttttataacaatgtgttttgatcctgtgacaaa
tgtttcaccatagccttaacatttttcctattctaaactaaattgtgcat
gttaacattttgatctgtctcaacttctaagaacactaagatgtattgtt
ggtgttgaggacttttctctctggtttcctgtatgtttaattcaattaca
tcattcttgagtgtttcccacttgcaaagtaccatctagtactgtctagt
catagaaagatggttaaaccaacacgtctttatgaaagaggtgaaactac
ctctaagtaacttaggtacaaagaagagtgcagtatggtttataaaacaa
aaacaaaaaacaaaaaacaagcaaaccagaaaatgctgcaagtgaaacca
aggagggcataaatttaaataaggaagatcctagaagtcttgggaaacag
agaagcagagacttttattaagagatgtatatcatttgatatattgctgt
gagagttttgggggctggaaaacctatctagagaacagagaaagtttaaa
tacggcacacatatgacacctgtgtgtctgtttatgaatttagactgaga
ccacacctatcctcttcagtatggcaattactagccagctgtaactgtta
gatttatattaagaaaacaaaactccattgtcaatctttccagccaatat
gatacatggtaagtgctactagcactcagaggaagaatattgtgttgtaa
aggatggtacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_166258534_166259575
seq2: B6Ng01-024A18.b_42_1068 (reverse)

seq1  TTATTATTATTGAGACAGGTTCATGTCATGTCA-CCCAAGTTGGTCTGAA  49
      |||||| ||||| |||||| ||||||||||||| |||||||| ||| |||
seq2  TTATTA-TATTG-GACAGG-TCATGTCATGTCACCCCAAGTT-GTC-GAA  45

seq1  GCTCATATATGTCGTCTCTCAACCTCCTGAATGCTGGGGTTATAAGGGAA  99
      ||||| |||||||||||||||||   ||| ||||||||  ||||||||||
seq2  GCTCAAATATGTCGTCTCTCAAC--TCTG-ATGCTGGG--TATAAGGGAA  90

seq1  CTTCACCACTTTTCTTTCTAATGTTCTTTTATATTGAAAAGTGGTCCTTT  149
      | ||||||| |||||||||||||||| ||||||||||||||| |||| ||
seq2  C-TCACCAC-TTTCTTTCTAATGTTC-TTTATATTGAAAAGT-GTCC-TT  135

seq1  TTTTCACAAATGGAAACAAAAATTTGTCTGTTCATATTCCTTAAATGCTT  199
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  TTTTCACAAAT-GAAACAAAAATTTGTCTGTTCATATTCCTAAAATGCTT  184

seq1  TATATATTTCCACTGGTCAACTCCTACAGCTAGCTCAGCAATAAATTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTCCACTGGTCAACTCCTACAGCTAGCTCAGCAATAAATTGTT  234

seq1  CCAACAAGTAGAGAAAAAAAAGTGTCCTTTACTATAGAGTGTGCTAATTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAGTAGAGAAAAAAAAGTGTCCTTTACTATAGAGTGTGCTAATTA  284

seq1  GCTTTTAATCAGCTAACAAAAGAATCAGGTCGACGTTCTTAAAACTCAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATCAGCTAACAAAAGAATCAGGTCGACGTTCTTAAAACTCAAC  334

seq1  TCAGGTTATTATCCTTTGAGGTTGATCTGAAAGTGTGTCTCAATATTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTATTATCCTTTGAGGTTGATCTGAAAGTGTGTCTCAATATTCTG  384

seq1  TGCATTCTTTGTAAAAATTATGAACTTGCTTTTTTTTTTAAGTTCAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTTTGTAAAAATTATGAACTTGCTTTTTTTTTTAAGTTCAATTT  434

seq1  TGAGCCAGGCATGTGATGCATGCCTTTAATACCAGCACTCAGGTTAATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGGCATGTGATGCATGCCTTTAATACCAGCACTCAGGTTAATGA  484

seq1  GGCAGGTCATTCTCTGAGTTTGAGACCAACCTGGTTTAAGAAGCAAGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTCATTCTCTGAGTTTGAGACCAACCTGGTTTAAGAAGCAAGCTC  534

seq1  CAGGACAGCCAGGGCTATAGAGAGAAACCCTGCCTTGAAAAAACAAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGGGCTATAGAGAGAAACCCTGCCTTGAAAAAACAAAAAA  584

seq1  CAATAAACTACAACAAAAAATCAAATCCAACATTTTATAGAACTAATAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACTACAACAAAAAATCAAATCCAACATTTTATAGAACTAATAAC  634

seq1  AATATTAACATTTTGATGTAGCCTCTCATAGAATGTTTTAGACATAATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAACATTTTGATGTAGCCTCTCATAGAATGTTTTAGACATAATTG  684

seq1  TAACCACAAAATTCATATTCAACATGTGCTTGCTAAGTATGTTAAAAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACAAAATTCATATTCAACATGTGCTTGCTAAGTATGTTAAAAGCA  734

seq1  AAAATTATTTTTAGAAAGTGGCAGCATGTTTGCTTATATGCCCACTAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTTAGAAAGTGGCAGCATGTTTGCTTATATGCCCACTAAGA  784

seq1  ATTTATTATAATTTGAATGTCCATCATTTAACCCAATTTGTGTGTGTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATAATTTGAATGTCCATCATTTAACCCAATTTGTGTGTGTGTG  834

seq1  TAGTATATATACATATTAGTATGGGTATATGCACATCTGCATGTAGGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATATACATATTAGTATGGGTATATGCACATCTGCATGTAGGTTC  884

seq1  ATGTGTGTGCGTGCACATGCATTGTGGAGGCAAGAGATTAATACTAGGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGCGTGCACATGCATTGTGGAGGCAAGAGATTAATACTAGGTG  934

seq1  TCTCGGGATATGTATCCACCTTATTTTATGAGCCAGTGTATGTCACCGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGATATGTATCCACCTTATTTTATGAGCCAGTGTATGTCACCGAA  984

seq1  CCTAGAGCTCACTGATTGGCTGGTTTGTTTAGCTATTGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGCTCACTGATTGGCTGGTTTGTTTAGCTATTGAATTC  1027

seq1: chrX_166156925_166158091
seq2: B6Ng01-024A18.g_70_1231

seq1  GAATTCATTAATTAACGACCTTAGCTTTTTGTTTGGTGTGGTTAATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTAACGACCTTAGCTTTTTGTTTGGTGTGGTTAATTTCA  50

seq1  TGTATTTTAATTTTATAGCTATGTAAAAACAGAACCAAATATTTAGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTAATTTTATAGCTATGTAAAAACAGAACCAAATATTTAGTCTG  100

seq1  AAATTAAACAGAGTAGTTTGAATTTTTCTGCTCTCATTTCTTGTAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACAGAGTAGTTTGAATTTTTCTGCTCTCATTTCTTGTAAATAG  150

seq1  CAAGCATTTTTTTTCACAAAAAAATTGTTGATTCATTCAGAAGTCTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTTTTTTTCACAAAAAAATTGTTGATTCATTCAGAAGTCTAAAA  200

seq1  TCTTGCATGAAATTAAAGGAAAGTTCTGTTATACAAAGCAAAAATACGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATGAAATTAAAGGAAAGTTCTGTTATACAAAGCAAAAATACGCT  250

seq1  TCTGCCAGGAAAAGTGCCATCCATAAATAAATAAATAAATAATAAAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGGAAAAGTGCCATCCATAAATAAATAAATAAATAATAAAGTTC  300

seq1  CAGGTCTGTTTTTAATCTCACATTTAGTTAAGGCACGGTTCTGATAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGTTTTTAATCTCACATTTAGTTAAGGCACGGTTCTGATAGAGG  350

seq1  TAGTGAACTGCCAAAGGAAAATGCTTTCCTGCTGCTGAAGAAATGATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAACTGCCAAAGGAAAATGCTTTCCTGCTGCTGAAGAAATGATGAG  400

seq1  GCAGGCAGGGGGTTTATTTTTATAACAATGTGTTTTGATCCTGTGACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGGGGGTTTATTTTTATAACAATGTGTTTTGATCCTGTGACAAA  450

seq1  TGTTTCACCATAGCCTTAACATTTTTCCTATTCTAAACTAAATTGTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACCATAGCCTTAACATTTTTCCTATTCTAAACTAAATTGTGCAT  500

seq1  GTTAACATTTTGATCTGTCTCAACTTCTAAGAACACTAAGATGTATTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTTTGATCTGTCTCAACTTCTAAGAACACTAAGATGTATTGTT  550

seq1  GGTGTTGAGGACTTTTCTCTCTGGTTTCCTGTATGTTTAATTCAATTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGAGGACTTTTCTCTCTGGTTTCCTGTATGTTTAATTCAATTACA  600

seq1  TCATTCTTGAGTGTTTCCCACTTGCAAAGTACCATCTAGTACTGTCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTGAGTGTTTCCCACTTGCAAAGTACCATCTAGTACTGTCTAGT  650

seq1  CATAGAAAGATGGTTAAACCAACACGTCTTTATGAAAGAGGTGAAACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAAGATGGTTAAACCAACACGTCTTTATGAAAGAGGTGAAACTAC  700

seq1  CTCTAAGTAACTTAGGTACAAAGAAGAGTGCAGTATGGTTTATAAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTAACTTAGGTACAAAGAAGAGTGCAGTATGGTTTATAAAACAA  750

seq1  AAACAAAAAACAAAAAACAAGCAAACCAGAAAATGCTGCAAGTGAAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACAAAAAACAAGCAAACCAGAAAATGCTGCAAGTGAAACCA  800

seq1  AGGAGGGCATAAATTTAAATAAGGAAGATCCTAGAAGTCTTGGGAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCATAAATTTAAATAAGGAAGATCCTAGAAGTCTTGGGAAACAG  850

seq1  AGAAGCAGAGACTTTTATTAAGAGATGTATATCATTTGATATATTGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGAGACTTTTATTAAGAGATGTATATCATTTGATATATTGCTGT  900

seq1  GAGAGTTTTGGGGGCTGGAAAACCTATCTAGAAGAACAGAGAAAGTTTAA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGAGTTTTGGGGGCTGGAAAACCTATCTAG-AGAACAGAGAAAGTTTAA  949

seq1  ATACGGCACACATATGACA-CTGTGGTTGTCTGTTTATGAATTTAGAACT  999
      ||||||||||||||||||| |||||  ||||||||||||||||||| |||
seq2  ATACGGCACACATATGACACCTGTG--TGTCTGTTTATGAATTTAG-ACT  996

seq1  GAGACCACACCTATCCTCTCCAGTATGGCAATAACTAG-CAGCATGTAAC  1048
      ||||||||||||||||||| |||||||||||| ||||| |||| ||||||
seq2  GAGACCACACCTATCCTCTTCAGTATGGCAATTACTAGCCAGC-TGTAAC  1045

seq1  TGTTTAGATTTATATTTAAGAAAACAAAACTCAATAGTCAATCTTT-CAG  1097
      || ||||||||||| ||||||||||||||||| || |||||||||| |||
seq2  TG-TTAGATTTATA-TTAAGAAAACAAAACTCCATTGTCAATCTTTCCAG  1093

seq1  CCATATTAGATACATGTTAAGTGCTTACTAGGCATCAGAGGAAG-ATATT  1146
      ||| ||  |||||||| ||||||| ||||||   |||||||||| |||||
seq2  CCA-ATATGATACATGGTAAGTGC-TACTAGCACTCAGAGGAAGAATATT  1141

seq1  GTGGTGGAGGGGATGGTAGAA  1167
      ||| || |  |||||||| ||
seq2  GTGTTGTAAAGGATGGTACAA  1162