BAC Information

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BAC

Clone NameB6Ng01-025E03
ChromosomeX (Build37)
Map Location 86,658,561 - 86,803,266
singlet/doubletdoublet
Overlap geneEG629419
Upstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2
Downstream gene4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025E03.bB6Ng01-025E03.g
ACCDH856661DH856662
length1,1711,122
definitionDH856661|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E03, 5' end.DH856662|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,802,066 - 86,803,266)(86,658,561 - 86,659,076)
sequence
gaattcttaattacatacattgtagtaagtcagacattgtgaaacataca
cactaacaagttatagttggatgtatcttaccataacagtaataattgtt
agaagaacctagatctttgttgtagaatttttctttcgagtaacattaaa
aaaaaagtacaaataaactataatgtttgaaaatgtttgcttatgagatg
aaaccatagagaacaaagaacaccatgaaatataggctatctatttagca
aaatgagataaccatgacagggtctgagggaggtagtatgtttttagtta
tgtttgattcctttttctggaaagtttatgataatttaattaaaattcct
tttggtcctgaagatagaacccaggactttgaacatactgggcaaaagat
acagcactaagtcaaccccattctctaagaagtatgaaaaaggattgtat
tacactccctggttatatacatttacctcaatttaccataaaaagttaag
tgaaatgaaacagttggtcaaacacagttctataatatctgtaagtgctc
tagtattaagtgacatgtttgcctaaaacaagaatattatagaaatactt
gctgatgagcaaagataggcctcactgacaagttgctgaaatatgagctg
tgaactaaaatcatttttcccatagaacactctatatttcattgcatttc
attttgagcatatataaaggggtacctcagtgtaaacagagacacaaaag
tggttagactctttccaattcctgtttagagacagaaagagacatgggaa
tgacagaatgagtattttagtgatatttgttattatattagactgtggtt
ttctaatagcaaatatatccatgggatgagctctgaaaaatagcagtata
gattgaaacacatatgaacctttccccaatctggtatgacagctgccaat
tagatgatctattagtgaaagtccacaagaagtgcctctaacatgaggaa
gaaaaccctttggaatctttgaatttcatggagatctacttgatgtttct
atgcacagtcactttagttatgtcattcaattatggatcagaagtggatt
ggaattttcctaacttgtagatgagctattgaactgaaaaatagcaatgt
tctatcttgcacatagaaata
gaattccagtcattgaaacaagaagctataacactgaagttgccttggag
atcccaagatgttcaagatgccagagccatgagatatctgctaaggaatg
cttctaacagggagttgaatcagcccaggaaaagatgtttgttgcaatca
acatggatggaaaattagttggagatctgaagaccacttggatatcagtt
atggagaggcagagtttggagtttgtccagctgatttcctgtcttgcttt
ggggattatagttaagtgattggatggctgtcagaagaaaccttgaactt
tagacttttatcattgttgagactgctatagactatgggaactttggaag
ttgaactaaatgtacattttttattatgctatggccatatttgaccctga
tagactcaagtttttgaacaggcctatggggtccagggagtggaacgtga
tggtttaaatgtgcttggcccagggagaggcactttttggaggtgtgtcc
ttgttggagtaggtgtgcctttgtggccatgggtttaaggccctcaccct
agctgcctggaatttagtcttcctctagcaaccttcagatgaagatttaa
aactctcagctcttcctgcatcatgcctgcttggattctgccatattctg
gctttgatcatactagactgaacctctgaacctgtaagccagcctcaatt
aaatgttgtcctttataagacttgccttggtcatggtttctgttcacagc
agtaaatccctaactaagacaaggaccaaggccaatcttaacaaagaaag
cattttactgggaactgctcactgtttcagaggtctagtctattatcatc
acttcagggagcatggcaacttgcagccaggtccctgtagtagtacctga
gagctatatactgattcatagactagaatgaaactctgagtttggcatgg
gcaattgaaacctcaaagcccaccgctagttacacacttcctctaacagg
aactacttcttatcctttatatcctctacatagcacccctcctaggtgac
tagtcattcaaattatgtttatacatttcaccaaagtaaaatgaatatgt
ttaacatgcagtggaaagctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_86802066_86803266
seq2: B6Ng01-025E03.b_49_1219 (reverse)

seq1  TATTTCCTTAGTGTGC-AGATAGAACATTTGCTAATATTTTTCAGTTTCA  49
      ||||||  || ||||| |||||||||| ||||   |||||||||| ||||
seq2  TATTTC--TA-TGTGCAAGATAGAACA-TTGC---TATTTTTCAG-TTCA  42

seq1  ATAGCCTCATCTCTGCAGCTTAGGGAAAAATTCCAATTCCACTTCTTGAT  99
      |||| ||||  ||| ||  |||||  |||||||||| |||||||| ||||
seq2  ATAG-CTCA--TCTACAAGTTAGG--AAAATTCCAA-TCCACTTC-TGAT  85

seq1  -CATAAATGTTGAATGACATAACTAAAGTGACTGTGCATAGAAAACATCA  148
       |||||   |||||||||||||||||||||||||||||||| ||||||||
seq2  CCATAA---TTGAATGACATAACTAAAGTGACTGTGCATAG-AAACATCA  131

seq1  AGTAGATTCTCAATGAATATTCAAAGATTTCCAAAGGGTTTTCTTCCCTC  198
      |||||| |||| ||||| ||||||||| ||||||||||||||||| ||||
seq2  AGTAGA-TCTCCATGAA-ATTCAAAGA-TTCCAAAGGGTTTTCTT-CCTC  177

seq1  ATGTTAGGAGGCAACTTTCTTGTTGGACTTTTCACTAATAGATCATCTAA  248
      |||||| ||||||   |||||| ||||| |||||||||||||||||||||
seq2  ATGTTA-GAGGCA--CTTCTTG-TGGAC-TTTCACTAATAGATCATCTAA  222

seq1  TTGGCAGCTGTCATACCAGATTGGTGGAAAAGGTTCATATGTGTTTCAAT  298
      |||||||||||||||||||||||  || ||||||||||||||||||||||
seq2  TTGGCAGCTGTCATACCAGATTG--GGGAAAGGTTCATATGTGTTTCAAT  270

seq1  CTATACTGCTATTTTTTCAGAGCTCATCCCATGGATATATTTTGCTATTA  348
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  CTATACTGCTA-TTTTTCAGAGCTCATCCCATGGATATA-TTTGCTATTA  318

seq1  GAAAACCACAGTCTAATATAATAACAAATATCACTAAAATACTCATTCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCACAGTCTAATATAATAACAAATATCACTAAAATACTCATTCTG  368

seq1  TCATTCCCATGTCTCTTTCTGTCTCTAAACAGGAATTGGAAAGAGTCTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCATGTCTCTTTCTGTCTCTAAACAGGAATTGGAAAGAGTCTAA  418

seq1  CCACTTTTGTGTCTCTGTTTACACTGAGGTACCCCTTTATATATGCTCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTGTGTCTCTGTTTACACTGAGGTACCCCTTTATATATGCTCAA  468

seq1  AATGAAATGCAATGAAATATAGAGTGTTCTATGGGAAAAATGATTTTAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGCAATGAAATATAGAGTGTTCTATGGGAAAAATGATTTTAGT  518

seq1  TCACAGCTCATATTTCAGCAACTTGTCAGTGAGGCCTATCTTTGCTCATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTCATATTTCAGCAACTTGTCAGTGAGGCCTATCTTTGCTCATC  568

seq1  AGCAAGTATTTCTATAATATTCTTGTTTTAGGCAAACATGTCACTTAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTATTTCTATAATATTCTTGTTTTAGGCAAACATGTCACTTAATA  618

seq1  CTAGAGCACTTACAGATATTATAGAACTGTGTTTGACCAACTGTTTCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCACTTACAGATATTATAGAACTGTGTTTGACCAACTGTTTCATT  668

seq1  TCACTTAACTTTTTATGGTAAATTGAGGTAAATGTATATAACCAGGGAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAACTTTTTATGGTAAATTGAGGTAAATGTATATAACCAGGGAGT  718

seq1  GTAATACAATCCTTTTTCATACTTCTTAGAGAATGGGGTTGACTTAGTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACAATCCTTTTTCATACTTCTTAGAGAATGGGGTTGACTTAGTGC  768

seq1  TGTATCTTTTGCCCAGTATGTTCAAAGTCCTGGGTTCTATCTTCAGGACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTTTGCCCAGTATGTTCAAAGTCCTGGGTTCTATCTTCAGGACC  818

seq1  AAAAGGAATTTTAATTAAATTATCATAAACTTTCCAGAAAAAGGAATCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAATTTTAATTAAATTATCATAAACTTTCCAGAAAAAGGAATCAA  868

seq1  ACATAACTAAAAACATACTACCTCCCTCAGACCCTGTCATGGTTATCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTAAAAACATACTACCTCCCTCAGACCCTGTCATGGTTATCTCA  918

seq1  TTTTGCTAAATAGATAGCCTATATTTCATGGTGTTCTTTGTTCTCTATGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTAAATAGATAGCCTATATTTCATGGTGTTCTTTGTTCTCTATGG  968

seq1  TTTCATCTCATAAGCAAACATTTTCAAACATTATAGTTTATTTGTACTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCATAAGCAAACATTTTCAAACATTATAGTTTATTTGTACTTT  1018

seq1  TTTTTTAATGTTACTCGAAAGAAAAATTCTACAACAAAGATCTAGGTTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATGTTACTCGAAAGAAAAATTCTACAACAAAGATCTAGGTTCT  1068

seq1  TCTAACAATTATTACTGTTATGGTAAGATACATCCAACTATAACTTGTTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAATTATTACTGTTATGGTAAGATACATCCAACTATAACTTGTTA  1118

seq1  GTGTGTATGTTTCACAATGTCTGACTTACTACAATGTATGTAATTAAGAA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTTTCACAATGTCTGACTTACTACAATGTATGTAATTAAGAA  1168

seq1  TTC  1201
      |||
seq2  TTC  1171

seq1: chrX_86658561_86659076
seq2: B6Ng01-025E03.g_683_1191

seq1  TCCTGCATCATGCCTGCTTGGATTCTGCCATATTCTGGCTTTGATCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCATGCCTGCTTGGATTCTGCCATATTCTGGCTTTGATCATAC  50

seq1  TAGACTGAACCTCTGAACCTGTAAGCCAGCCTCAATTAAATGTTGTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGAACCTCTGAACCTGTAAGCCAGCCTCAATTAAATGTTGTCCTT  100

seq1  TATAAGACTTGCCTTGGTCATGGTTTCTGTTCACAGCAGTAAATCCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACTTGCCTTGGTCATGGTTTCTGTTCACAGCAGTAAATCCCTAA  150

seq1  CTAAGACAAGGACCAAGGCCAATCTTAACAAAGAAAGCATTTTACTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACAAGGACCAAGGCCAATCTTAACAAAGAAAGCATTTTACTGGGA  200

seq1  ACTGCTCACTGTTTCAGAGGTCTAGTCTATTATCATCACTTCAGGGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCACTGTTTCAGAGGTCTAGTCTATTATCATCACTTCAGGGAGCA  250

seq1  TGGCAACATGCAGCCAGGT-CCTGGAGTAGTACCTGAGAGCTATATACTG  299
      ||||||| ||||||||||| |||| |||||||||||||||||||||||||
seq2  TGGCAACTTGCAGCCAGGTCCCTGTAGTAGTACCTGAGAGCTATATACTG  300

seq1  ATTCATAGACTAAGAATGATACTCTGAGTTTGGCATGGGCAATTGAAACC  349
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  ATTCATAGACT-AGAATGAAACTCTGAGTTTGGCATGGGCAATTGAAACC  349

seq1  TCAAAGCCCACCGCTAGTGACACACTTCCTCTAACAAGGACCTACTTCCT  399
      |||||||||||||||||| |||||||||||||||| |||| |||||| ||
seq2  TCAAAGCCCACCGCTAGTTACACACTTCCTCTAAC-AGGAACTACTT-CT  397

seq1  AATCCTTTTAATCTCTTACAATAGCACCACTCCTAGGTGACTAGTCATTC  449
       |||||||  |||   ||| |||||||| |||||||||||||||||||||
seq2  TATCCTTTATATCCTCTAC-ATAGCACCCCTCCTAGGTGACTAGTCATTC  446

seq1  AAATATATAGTTTATACATTTTCACAAAGAAAAATGAAGAATGTGTAACA  499
      |||| ||| ||||||||||||   ||||| ||||||||  |||| |||||
seq2  AAAT-TAT-GTTTATACATTTCACCAAAGTAAAATGAA-TATGTTTAACA  493

seq1  GTGCAGTGGAAAGCTAC  516
       ||||||||||||||||
seq2  -TGCAGTGGAAAGCTAC  509