BAC Information

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BAC

Clone NameB6Ng01-027A01
ChromosomeX (Build37)
Map Location 164,028,592 - 164,209,496
singlet/doubletdoublet
Overlap geneFrmpd4
Upstream geneLOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027A01.bB6Ng01-027A01.g
ACCDH857871DH857872
length903982
definitionDH857871|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A01, 5' end.DH857872|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,028,592 - 164,029,498)(164,208,512 - 164,209,496)
sequence
gaattcatcttcgactttttatcatttcactaagatctatttgatgcata
atatgtgtgcaaatatatgcacacacacacacacacacatatatatatat
atatatatatatatatatatatatatatatatatatacatacacacacaa
atataaattgtaaaataccttttcaatcaacttggtttgcacatctatca
cttcacatagtgatgctctatgtaggggtgagaacagtaaccccctattc
cattagcagatattagctgttcagtatagtattgactattattgttatgg
ctctttttccctttgtgctatttgtaacagaaaatcacagactgcttaat
ttagaatggacacaaatatattggccgaagcttctagaggatgagttcaa
gatcaacgtggctaattctagtgaaggccttctcaatgcaccaccccata
ataggagaagaaaagcaagagaactcatgatagaaatgacctcttttaaa
cttttggcaattttacaagggcccttaaacccttgcaagagagctttgct
actatgatttaagtgctatttaaaagacctaacttattgatacaatttat
tataccaggaatttggctttatctattaattatgaaagggatcaaaaagc
acttgaacatgtctttctgctcctagtcctccagtgtttcctttaatact
gttaatattgctgtatatctaaagtgctctaatatttggtgcatatatat
ttattacagtatcttttgatgaagtatgttttcttatagatagaagtaaa
ggtgtatttatctcatggaggtatggacagtcatcgctgatctcttctgg
ttacagtagagtgaataatatattcttatcttttttttacagctcagctg
tga
gaattcagatacttcatattcatccaataaagtggatattgaagcatgtt
aataacttacatgggtgtgtgtctatttttaaatggatataaataaatag
aatactagtctaatattattgatatatagagaatggatagaaataatcac
tataggtgccaagcatatagtaagaacttcaagactacatgatcatgtga
ctgttcaagtcatatgctctcatgccttcacacattcatttagtggtatt
gaacctaactgcccctaataagagacaactgaaaaactctttagtaacat
taaattggctgtaatgtgaatatttacactatggaaatcagcataagtta
caaataatgctattgtctttgagtttgtttgtctgtgtaacactgcctgc
tgttgcttcttctccttccttcttcccttgtacgcaaaggaaattaactc
agaaaagaagcattacagatttttcttttttgatcttgaatttaaaaagc
tgaattatcttaaataagtattactccttctgtatgagattactggaaaa
aatcaaaaggtagatgaaagatgaaaataattagtgataatcataagaat
gttggaatatatatatatttaatttatgctttggagttttaagaaaggtt
ccaagtgagtagactgttctcaacattgaatgattttggtctctcccaag
attatatctcgacctcagtgtcaggattagaaactgccattcatcagatt
ccctttggtcttttctgatgctgtaagtgttttaaccctatttagggttt
tctatatatttcacttcactggaggagtctctgaactatagcaattttga
cagtttcagcaataaagctcgaaatcgctctgagagggtagtctgtcatg
actcctagttggtcagtcagtaactcttctattaaaaactgtgggtgggc
tgggttacacctttttgttgtaattttgaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_164028592_164029498
seq2: B6Ng01-027A01.b_42_944

seq1  GAATTCATCTTCGACTTTTTATCATTTCACTAAGATCTATTTGATGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCGACTTTTTATCATTTCACTAAGATCTATTTGATGCATA  50

seq1  ATATGTGTGCAAATATATGCACACACACACACACACACATATATATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGCAAATATATGCACACACACACACACACACATATATATATAT  100

seq1  ATATATATATATATATATATATATATATATATATATACATACACACACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATACATACACACACAA  150

seq1  ATATAAATTGTAAAATACCTTTTCAATCAACTTGGTTTGCACATCTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTGTAAAATACCTTTTCAATCAACTTGGTTTGCACATCTATCA  200

seq1  CTTCACATAGTGATGCTCTATGTAGGGGTGAGAACAGTAACCCCCTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATAGTGATGCTCTATGTAGGGGTGAGAACAGTAACCCCCTATTC  250

seq1  CATTAGCAGATATTAGCTGTTCAGTATAGTATTGACTATTATTGTTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCAGATATTAGCTGTTCAGTATAGTATTGACTATTATTGTTATGG  300

seq1  CTCTTTTTCCCTTTGTGCTATTTGTAACAGAAAATCACAGACTGCTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCCCTTTGTGCTATTTGTAACAGAAAATCACAGACTGCTTAAT  350

seq1  TTAGAATGGACACAAATATATTGGCCGAAGCTTCTAGAGGATGAGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGGACACAAATATATTGGCCGAAGCTTCTAGAGGATGAGTTCAA  400

seq1  GATCAACGTGGCTAATTCTAGTGAAGGCCTTCTCAATGCACCACCCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACGTGGCTAATTCTAGTGAAGGCCTTCTCAATGCACCACCCCATA  450

seq1  ATAGGAGAAGAAAAGCAAGAGAACTCATGATAGAAATGACCTCTTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGAAGAAAAGCAAGAGAACTCATGATAGAAATGACCTCTTTTAAA  500

seq1  CTTTTGGCAATTTTACAAGGGCCCTTAAACCCTTGCAAGAGAGCTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCAATTTTACAAGGGCCCTTAAACCCTTGCAAGAGAGCTTTGCT  550

seq1  ACTATGATTTAAGTGCTATTT-AAAGACCTAACTTATTGATACAATTTAT  599
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTATGATTTAAGTGCTATTTAAAAGACCTAACTTATTGATACAATTTAT  600

seq1  TATACCAGGAATTTGGCTTTATCTATTAATTATGAAAGGGATCAAAAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAGGAATTTGGCTTTATCTATTAATTATGAAAGGGATCAAAAAGC  650

seq1  ACTTGAACATGTCTTTCTGCTCCTAGTCCTCCATTGTTTCCTTTAATACT  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTGAACATGTCTTTCTGCTCCTAGTCCTCCAGTGTTTCCTTTAATACT  700

seq1  GTTAATATTGCTGTATATCT-AAGTGCTCTAATATTTGGTGCATATATAT  748
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTAATATTGCTGTATATCTAAAGTGCTCTAATATTTGGTGCATATATAT  750

seq1  TTATTACAGTATCTTTTGATGAAGTATGTTTTCTTATAGATTAGAAGTAA  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTATTACAGTATCTTTTGATGAAGTATGTTTTCTTATAGA-TAGAAGTAA  799

seq1  AGGTTTATTTTTCCTCATGGAGGTATGTACAGTCATCGCTGATCTCTTCT  848
      |||| ||||| | |||||||||||||| ||||||||||||||||||||||
seq2  AGGTGTATTTAT-CTCATGGAGGTATGGACAGTCATCGCTGATCTCTTCT  848

seq1  GGTTTACATTAGAGTAGAATATAATTTTCTTATCTTTTTATTTACAGCTC  898
      || ||||| |||||| |||||  || ||||||||||||| ||||||||||
seq2  GG-TTACAGTAGAGT-GAATAATATATTCTTATCTTTTT-TTTACAGCTC  895

seq1  AGCCTGTGA  907
      || ||||||
seq2  AG-CTGTGA  903

seq1: chrX_164208512_164209496
seq2: B6Ng01-027A01.g_66_1047 (reverse)

seq1  ACCT-AAAATAACAACAAAAAAGCTGTGAAACCAGCCCACCCACAGTTTC  49
      |||| ||||| ||||| |||||| ||| || |||||||||||||||||| 
seq2  ACCTCAAAATTACAAC-AAAAAGGTGT-AACCCAGCCCACCCACAGTTTT  48

seq1  TAATAGAAGAGTTTACTGACTGACCAACTATGGAGTCATGACAGACTACC  99
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  TAATAGAAGAG-TTACTGACTGACCAACTA-GGAGTCATGACAGACTACC  96

seq1  ATCTCAGAGCGATTTCGAGCTTTATTGCTGAAACTGTCAAAATTGCTATA  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAGCGATTTCGAGCTTTATTGCTGAAACTGTCAAAATTGCTATA  146

seq1  GTTCAGAGACTCCTCCAGTGAAGTGAAATATATAGAAAACCCTAAATAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGACTCCTCCAGTGAAGTGAAATATATAGAAAACCCTAAATAGG  196

seq1  GTTAAAACACTTACAGCATCAGAAAAGACCAAAGGGAATCTGATGAATGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAACACTTACAGCATCAGAAAAGACCAAAGGGAATCTGATGAATGG  246

seq1  CAGTTTCTAATCCTGACACTGAGGTCGAGATATAATCTTGGGAGAGACCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTAATCCTGACACTGAGGTCGAGATATAATCTTGGGAGAGACCA  296

seq1  AAATCATTCAATGTTGAGAACAGTCTACTCACTTGGAACCTTTCTTAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTCAATGTTGAGAACAGTCTACTCACTTGGAACCTTTCTTAAAA  346

seq1  CTCCAAAGCATAAATTAAATATATATATATTCCAACATTCTTATGATTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGCATAAATTAAATATATATATATTCCAACATTCTTATGATTAT  396

seq1  CACTAATTATTTTCATCTTTCATCTACCTTTTGATTTTTTCCAGTAATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATTATTTTCATCTTTCATCTACCTTTTGATTTTTTCCAGTAATCT  446

seq1  CATACAGAAGGAGTAATACTTATTTAAGATAATTCAGCTTTTTAAATTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAAGGAGTAATACTTATTTAAGATAATTCAGCTTTTTAAATTCA  496

seq1  AGATCAAAAAAGAAAAATCTGTAATGCTTCTTTTCTGAGTTAATTTCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAAAAGAAAAATCTGTAATGCTTCTTTTCTGAGTTAATTTCCTT  546

seq1  TGCGTACAAGGGAAGAAGGAAGGAGAAGAAGCAACAGCAGGCAGTGTTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTACAAGGGAAGAAGGAAGGAGAAGAAGCAACAGCAGGCAGTGTTAC  596

seq1  ACAGACAAACAAACTCAAAGACAATAGCATTATTTGTAACTTATGCTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAACAAACTCAAAGACAATAGCATTATTTGTAACTTATGCTGAT  646

seq1  TTCCATAGTGTAAATATTCACATTACAGCCAATTTAATGTTACTAAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAGTGTAAATATTCACATTACAGCCAATTTAATGTTACTAAAGAG  696

seq1  TTTTTCAGTTGTCTCTTATTAGGGGCAGTTAGGTTCAATACCACTAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGTTGTCTCTTATTAGGGGCAGTTAGGTTCAATACCACTAAATG  746

seq1  AATGTGTGAAGGCATGAGAGCATATGACTTGAACAGTCACATGATCATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGAAGGCATGAGAGCATATGACTTGAACAGTCACATGATCATGT  796

seq1  AGTCTTGAAGTTCTTACTATATGCTTGGCACCTATAGTGATTATTTCTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGAAGTTCTTACTATATGCTTGGCACCTATAGTGATTATTTCTAT  846

seq1  CCATTCTCTATATATCAATAATATTAGACTAGTATTCTATTTATTTATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCTATATATCAATAATATTAGACTAGTATTCTATTTATTTATAT  896

seq1  CCATTTAAAAATAGACACACACCCATGTAAGTTATTAACATGCTTCAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAAAATAGACACACACCCATGTAAGTTATTAACATGCTTCAATA  946

seq1  TCCACTTTATTGGATGAATATGAAGTATCTGAATTC  985
      ||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTATTGGATGAATATGAAGTATCTGAATTC  982