BAC Information

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BAC

Clone NameB6Ng01-027K08
ChromosomeX (Build37)
Map Location 92,124,278 - 92,248,845
singlet/doubletdoublet
Overlap geneGm371, 9630042H07Rik, Arhgef9
Upstream geneEG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda
Downstream geneLOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027K08.bB6Ng01-027K08.g
ACCDH858335DH858336
length4241,002
definitionDH858335|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K08, 5' end.DH858336|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,124,278 - 92,124,709)(92,247,857 - 92,248,845)
sequence
ctgagttgggggctagcctggtttacagagtgagtcccagaacagtctgg
aatatacacagagtgagtcccaggacagtcagggatatacacagagaaag
ccagtcaggagaaactcaaaaaaaaaaaaaaaaccttaaaattttagggt
cattttttggttcttatgtatttatttttagaattttaggtgtttttgtt
tgtttgtttgattgattgatttttttcgagacagtgtttctctgtgtaac
cctggctgtcctggaactcactctgtagaccaggctggcttcaaactcgg
aaatttgcctgcctctgcccaccaagtgctggtattaaaggtgagtgcca
ccagcacccagcttaagggttttttaaacagggctttgtatggtttttat
aagagtgttttagtggggtttttg
gaattcagaaatagacctacatgcatatgtgtgacttatttttgacaaag
acagaacaattcagcaaagaaagtgcaatattttcaacaaatagtctgaa
ttagatttctatagacaaatttggaccttgatataagcccagacctttta
taataattaagtaggaatctattgtgaaattaaatacgaaactatagcgc
cctaagaaaaagtattctaaaaatctttagagttggtatatttgatatca
aaagcttgaaagagaaaatgaaaaatagactttaaagcaggagttcttcc
atgctgtccctgtattatttgttagcatctaataccctcatatttctagc
atttgccacctttcaaaaatggctacagaactggaggcttcttcctatga
aagtaccaatggcccgtgatggcttagcattaaaactactgccagggtag
ttggattccttgaatcctccattaatataaaaagatctataacctcagta
tcattgaaaggtcacagattccatttcccttttctctatgaaacatgtct
tatggtgatgaatttcctttctgtttcaactactaatgtcaattttctat
tgaatacaggttttgtcactgtcaacccaaagcaaaatactaaattactt
gggccttaaccgttatggaaagtcctgaagtcagtagttcttaaccagat
tattttgacgctttcaggtagggttggagaggaaaagaaccacagtctaa
aactgaaaagagtttgtgaggttcttcagggatattatggtctcctgaaa
gaatcctaaccaggaactcagcacatgtgagctctagttcccactttatt
gggagctgagtataagatcttaggtataatattcttctgtccttggtttc
ttgtctgtcaacaaatgatgtacactcccgattttatttttattttattt
tattatttttttttttatttggataccgaaaaagtgtggaaaaaagaaaa
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_92124278_92124709
seq2: B6Ng01-027K08.b_40_469

seq1  GAATTCCTGAGTTGGGGGCTAGCCTGGTTTACAGAGTGAGTCCCAGGACA  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAATTCCTGAGTTGGGGGCTAGCCTGGTTTACAGAGTGAGTCCCAGAACA  50

seq1  GTCTGGAATATACACAGAGTGAGTCCCAGGACAGTCAGGGATATACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAATATACACAGAGTGAGTCCCAGGACAGTCAGGGATATACACAG  100

seq1  AGAAAGCCAGTCAGGAGAAACTCAAAAAAAAAAAAAAAAGCCTTAAAATT  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAAGCCAGTCAGGAGAAACTCAAAAAAAAAAAAAAAA-CCTTAAAATT  149

seq1  TTAGGGTCATTTTTTGGTTCTTATGTATTTATTTTTAGAATTTTAGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTAGGGTCATTTTTTGGTTCTTATGTATTTATTTTTAGAATTTTAGGTG-  198

seq1  TTTTTGTTTGTTTGTTTGATTGATTGATTTTTTTCGAGAAAGTGTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTTGTTTGTTTGTTTGATTGATTGATTTTTTTCGAGACAGTGTTTCTC  248

seq1  TGTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTC  298

seq1  AAACTCAGAAATTTGCCTGCCTCTGCCCACCAAGTGCTGGTATTAAAGGT  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGGAAATTTGCCTGCCTCTGCCCACCAAGTGCTGGTATTAAAGGT  348

seq1  GAGTGCCACCAGCACCCAGCTTAAGGGTTTTTTAAACAGGGCTTTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCACCAGCACCCAGCTTAAGGGTTTTTTAAACAGGGCTTTGTATG  398

seq1  GTTTTTAGAAGAGTGTTGTAGTGGGGTTTTTG  432
      ||||||| ||||||||| ||||||||||||||
seq2  GTTTTTATAAGAGTGTTTTAGTGGGGTTTTTG  430

seq1: chrX_92247857_92248845
seq2: B6Ng01-027K08.g_69_1045 (reverse)

seq1  GGTATCACAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAATAA  50
      |||||| |||||||   |||| |||||  |||||||||||||||||||||
seq2  GGTATC-CAAATAA---AAAAAAAAAT--AATAAAATAAAATAAAAATAA  44

seq1  AATCTGGAGTGTTACCATCATTTGTTTGACAGACAAGAAAACCAAGGACA  100
      |||| |||||||   ||||||||| |||||||||||| ||||||||||||
seq2  AATCGGGAGTGT--ACATCATTTG-TTGACAGACAAG-AAACCAAGGACA  90

seq1  GAAGAAATATTATACCTAAGATCTTATACTCAGCTCCCAATAAAGTGGGA  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAG-AATATTATACCTAAGATCTTATACTCAGCTCCCAATAAAGTGGGA  139

seq1  ACTAGAGCTCACATGTGCTGAGTTCCTGGTTAGGATTTCTTTTCAGGAGA  200
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  ACTAGAGCTCACATGTGCTGAGTTCCTGGTTAGGATT--CTTTCAGGAGA  187

seq1  CCATAATATCCCTGAAGAACCTCACAAACTCTTTTCAGTTTTAGACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATATCCCTGAAGAACCTCACAAACTCTTTTCAGTTTTAGACTGTG  237

seq1  GTTCTTTTCCTCTCCAACCCTACCTGAAAGCGTCAAAATAATCTGGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTCCTCTCCAACCCTACCTGAAAGCGTCAAAATAATCTGGTTAA  287

seq1  GAACTACTGACTTCAGGACTTTCCATAACGGTTAAGGCCCAAGTAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTGACTTCAGGACTTTCCATAACGGTTAAGGCCCAAGTAATTTA  337

seq1  GTATTTTGCTTTGGGTTGACAGTGAC-AAACCTGTATTCAATAGAAAATT  399
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTATTTTGCTTTGGGTTGACAGTGACAAAACCTGTATTCAATAGAAAATT  387

seq1  GACATTAGTAGTTGAAACAGAAAGGAAATTCATCACCATAAGACATGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAGTAGTTGAAACAGAAAGGAAATTCATCACCATAAGACATGTTT  437

seq1  CATAGAGAAAAGGGAAATGGAATCTGTGACCTTTCAATGATACTGAGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAAAAGGGAAATGGAATCTGTGACCTTTCAATGATACTGAGGTT  487

seq1  ATAGATCTTTTTATATTAATGGAGGATTCAAGGAATCCAACTACCCTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTTTTTATATTAATGGAGGATTCAAGGAATCCAACTACCCTGGC  537

seq1  AGTAGTTTTAATGCTAAGCCATCACGGGCCATTGGTACTTTCATAGGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTTAATGCTAAGCCATCACGGGCCATTGGTACTTTCATAGGAAG  587

seq1  AAGCCTCCAGTTCTGTAGCCATTTTTGAAAGGTGGCAAATGCTAGAAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCCAGTTCTGTAGCCATTTTTGAAAGGTGGCAAATGCTAGAAATA  637

seq1  TGAGGGTATTAGATGCTAACAAATAATACAGGGACAGCATGGAAGAACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTATTAGATGCTAACAAATAATACAGGGACAGCATGGAAGAACTC  687

seq1  CTGCTTTAAAGTCTATTTTTCATTTTCTCTTTCAAGCTTTTGATATCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAAAGTCTATTTTTCATTTTCTCTTTCAAGCTTTTGATATCAAA  737

seq1  TATACCAACTCTAAAGATTTTTAGAATACTTTTTCTTAGGGCGCTATAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAACTCTAAAGATTTTTAGAATACTTTTTCTTAGGGCGCTATAGT  787

seq1  TTCGTATTTAATTTCACAATAGATTCCTACTTAATTATTATAAAAGGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTATTTAATTTCACAATAGATTCCTACTTAATTATTATAAAAGGTCT  837

seq1  GGGCTTATATCAAGGTCCAAATTTGTCTATAGAAATCTAATTCAGACTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATATCAAGGTCCAAATTTGTCTATAGAAATCTAATTCAGACTAT  887

seq1  TTGTTGAAAATATTGCACTTTCTTTGCTGAATTGTTCTGTCTTTGTCAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAATATTGCACTTTCTTTGCTGAATTGTTCTGTCTTTGTCAAA  937

seq1  AATAAGTCACACATATGCATGTAGGTCTATTTCTGAATTC  989
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCACACATATGCATGTAGGTCTATTTCTGAATTC  977