BAC Information

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BAC

Clone NameB6Ng01-027O17
Chromosome7 (Build37)X (Build37)
Map Location 64,901,238 - 64,902,26842,318,432 - 42,318,574
singlet/doubletsingletsinglet
Overlap geneGabrb3
Upstream geneLOC100040839, Gabrg3, Gabra5
Downstream geneEG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027O17.bB6Ng01-027O17.g
ACCDH858534DH858535
length1,033720
definitionDH858534|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O17, 5' end.DH858535|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,901,238 - 64,902,268)(42,318,432 - 42,318,574)
sequence
gaattcctgtaggctcagcttgtcattcaactgaaaaccagcctccacag
tggcttttgttcttatggcctgttcacagtgcatctggggatttgtgtct
ggaacgtgtatcaggactataactttcaaagtagtctgcagaatgctgaa
gttgcataaggaacacccaaatgctaggcagaggacattttaatgtttat
tagcaaagacaccatttcacatatggtaacgaaggtctttcaacataagc
acactggaataacctgtttatcataagggaatcacatcatctaattctaa
ccccatgtgaatactgatagctatagtacatttctatttctgtccttatc
tcaggagaattttctgttagatcagtattggtaagagaataatgttaata
aggggcccttattttatgatgtgtttaccataaaacaccagctgcatcta
gccatatgcatctagttcctgatttgccactcaaggacttatggtcacaa
ttgggtgtgtctattcaagtcatattacatggttgagatcttcaggaatg
tagcatatcctacagacagcttcaagaagaaacatttcctgcaaagcatc
ctatcattctgtcccctttacagatcttagagatgtatctgagaagctta
cagacgcatagttgacttttgccacagaaacagtggcttcaagccatacc
ctttaatgcttctcctagatttttctggcttctttaatagctagctcctg
acttccaccattttatccttcctgtgctctctgaatggaagatactggaa
gcttgctgatctgggagaacattggcattttttctccagctcacctgtgt
gacttctgagtcgcttcacctgggtcctcacaggccatcccatccagcta
ttaggcacttcacttttctatgtggctattgtacagaaagtgcattttca
ccggctctctttttgaaaaagaattttatcattctggaggcacgtatgga
tggtttttctcttttcttaaaatcatgtaaaaa
gaattcaaggcaagtcaagactgcatagtgagatcttatgggggaggggg
aaagaaaccaggaatggaggtttatggcaatatttcagaaggagggcctg
agggtgcattgcatgaactgtgaagaaaaagcccaagttttcagtggaga
cccaaggacagtagccatgccaagaccctggtatattgtctggggaatgt
tgcatgcaaggagaagagttgaactatggaagaccttatgtgtgctccgg
ggttgcagagctggaatgtgaggttgctgtagtcctttggatcactgatg
attctattatgagctccaaatgcccaacactgagctgagggattcccatt
tgtctttctcattttgaggacttctttggtctgatacttatctgctatgt
ccccatttctactttgtgaagggactatttattctgtttttaactgttaa
aagtacatggcatgtttgtttcttatgttatagcaactcagagttaagaa
attgcctgggtctcagaagagacagcacaagtacttttgtagagggttag
aactcttaaaaactacagggacttttttttaatgatttttttattagatt
tttttttcatttacttttcaaatgctatcctgaaagttccctatatactc
cttgcgccctgctccccaagccacccactcctgctttcctggccctggca
tttcccctgtactggggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_64901238_64902268
seq2: B6Ng01-027O17.b_46_1078

seq1  GAATTCCTGTAGGCTCAGCTTGTCATTCAACTGAAAACCAGCCTCCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTAGGCTCAGCTTGTCATTCAACTGAAAACCAGCCTCCACAG  50

seq1  TGGCTTTTGTTCTTATGGCCTGTTCACAGTGCATCTGGGGATTTGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGTTCTTATGGCCTGTTCACAGTGCATCTGGGGATTTGTGTCT  100

seq1  GGAACGTGTATCAGGACTATAACTTTCAAAGTAGTCTGCAGAATGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGTGTATCAGGACTATAACTTTCAAAGTAGTCTGCAGAATGCTGAA  150

seq1  GTTGCATAAGGAACACCCAAATGCTAGGCAGAGGACATTTTAATGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATAAGGAACACCCAAATGCTAGGCAGAGGACATTTTAATGTTTAT  200

seq1  TAGCAAAGACACCATTTCACATATGGTAACGAAGGTCTTTCAACATAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGACACCATTTCACATATGGTAACGAAGGTCTTTCAACATAAGC  250

seq1  ACACTGGAATAACCTGTTTATCATAAGGGAATCACATCATCTAATTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGAATAACCTGTTTATCATAAGGGAATCACATCATCTAATTCTAA  300

seq1  CCCCATGTGAATACTGATAGCTATAGTACATTTCTATTTCTGTCCTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGTGAATACTGATAGCTATAGTACATTTCTATTTCTGTCCTTATC  350

seq1  TCAGGAGAATTTTCTGTTAGATCAGTATTGGTAAGAGAATAATGTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAATTTTCTGTTAGATCAGTATTGGTAAGAGAATAATGTTAATA  400

seq1  AGGGGCCCTTATTTTATGATGTGTTTACCATAAAACACCAGCTGCATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCCTTATTTTATGATGTGTTTACCATAAAACACCAGCTGCATCTA  450

seq1  GCCATATGCATCTAGTTCCTGATTTGCCACTCAAGGACTTATGGTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATGCATCTAGTTCCTGATTTGCCACTCAAGGACTTATGGTCACAA  500

seq1  TTGGGTGTGTCTATTCAAGTCATATTACATGGTTGAGATCTTCAGGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTGTCTATTCAAGTCATATTACATGGTTGAGATCTTCAGGAATG  550

seq1  TAGCATATCCTACAGACAGCTTCAAGAAGAAACATTTCCTGCAAAGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATCCTACAGACAGCTTCAAGAAGAAACATTTCCTGCAAAGCATC  600

seq1  CTATCATTCTGTCCCCTTTACAGATCTTAGAGATGTATCTGAGAAGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTCTGTCCCCTTTACAGATCTTAGAGATGTATCTGAGAAGCTTA  650

seq1  CAGACGCATAGTTGAC-TTTGCCACAGAAACAGTGGCTTCAAGCCATACC  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGACGCATAGTTGACTTTTGCCACAGAAACAGTGGCTTCAAGCCATACC  700

seq1  CTTTAATGCTTCTCCTAGATTTTTCTGGCTTCTTTAATAGCTAGCTCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGCTTCTCCTAGATTTTTCTGGCTTCTTTAATAGCTAGCTCCTG  750

seq1  ACTTCCACCA-TTTATCCTTCCTGTGCTCTCTGAATGGAAGATACTGGAA  798
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACCATTTTATCCTTCCTGTGCTCTCTGAATGGAAGATACTGGAA  800

seq1  GCTTGCTGATCTGGGAGAACATTGGCATTTTTTCTCCAGCTCACCTGTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGATCTGGGAGAACATTGGCATTTTTTCTCCAGCTCACCTGTGT  850

seq1  GACTTCTGAGTCGCTTCACCTGGGTCCTCACAGGCCATCCCATCCAGCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGAGTCGCTTCACCTGGGTCCTCACAGGCCATCCCATCCAGCTA  900

seq1  TTAGGCACTTCACTTTTCTATGTGGCTATTGTACAGATAAGTGCATTTTC  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAGGCACTTCACTTTTCTATGTGGCTATTGTACAGA-AAGTGCATTTTC  949

seq1  ACCGGCTCCCTTTTTG-AGAAGTATTTTATCA-TCTTGAGGCACGTAATG  996
      |||||||| ||||||| | ||| ||||||||| ||| ||||||||||  |
seq2  ACCGGCTCTCTTTTTGAAAAAGAATTTTATCATTCTGGAGGCACGTATGG  999

seq1  AGTGTTTTTCTTTTTTTCTTAAAATCATTTAAAAA  1031
      |  ||||||| | ||||||||||||||| ||||||
seq2  ATGGTTTTTC-TCTTTTCTTAAAATCATGTAAAAA  1033

seq1: chrX_42318432_42318574
seq2: B6Ng01-027O17.g_667_788 (reverse)

seq1  ATGCCCCAGTACAGGGG-AATGTCAGAGCCA-AAAAATGGGAACGGGTGG  48
      ||||||||||||||||| |||| ||| ||||  |||   |||  ||||||
seq2  ATGCCCCAGTACAGGGGAAATGCCAGGGCCAGGAAAGCAGGAGTGGGTGG  50

seq1  GTAAGGGAG-TGGGGGGAGGGCTTTTGAGATAGCATTGGAAATGTAATTG  97
       |  |||||  ||| | | ||  |   | ||||    |||| |    || 
seq2  CTTGGGGAGCAGGGCGCAAGGAGT---ATATAG----GGAACT----TTC  89

seq1  AAGAAAATACGTAATAAAAAAAAAAGAAAAGTAAATGAAAAAAAAA  143
      | || |  |  |             |||||||||||||||||||||
seq2  AGGATAGCATTT-------------GAAAAGTAAATGAAAAAAAAA  122