MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-028C15
Chromosome	X (Build37)
Map Location	43,384,296 - 43,385,266
singlet/doublet	singlet
Overlap gene	none
Upstream gene	1110059M19Rik, LOC100040038, EG385346
Downstream gene	LOC100040075, Actrt1, EG245405, LOC665632
Link	Open Mouse BAC browser

Click to get alignment info.

name	1110059M19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68800 MGI:1916050
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 15 ESTs

name	LOC100040038 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040038
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	EG385346 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:385346 MGI:3644449
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040075 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040075
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Actrt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73360 MGI:1920610
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG245405 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245405 MGI:3647751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 130 ESTs, 8 Proteins

name	LOC665632 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665632
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 13 Proteins pseudo : _no_value

name	1110059M19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407347 GeneID:68800 MGI:1916050
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 15 ESTs product : RIKEN cDNA 1110059M19 gene transcript_id : XM_978018.1

name	EG385346 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271555 GeneID:385346 MGI:3644449
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG385346 transcript_id : XM_888120.2

name	Actrt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370294 GeneID:73360 MGI:1920610
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin-related protein T1 transcript_id : NM_028514.2

name	EG245405 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271556 GeneID:245405 MGI:3647751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 130 ESTs, 7 Proteins product : predicted gene, EG245405 transcript_id : XM_141727.9

name	1110059M19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407348 GeneID:68800 MGI:1916050
definition	codon_start : 1 product : hypothetical protein LOC68800 protein_id : XP_983112.1

name	EG385346 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83000958 GeneID:385346 MGI:3644449
definition	codon_start : 1 product : hypothetical protein protein_id : XP_893213.1

name	Actrt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386318 CCDS:CCDS30102.1 GeneID:73360 MGI:1920610
definition	GO_component : GO:0005856 - cytoskeleton [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : actin-related protein T1 protein_id : NP_082790.1

name	EG245405 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63744454 GeneID:245405 MGI:3647751
definition	codon_start : 1 product : hypothetical protein protein_id : XP_141727.3

name	LOC100040038 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040038
definition	number : 2 pseudo : _no_value

name	LOC100040038 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040038
definition	number : 1 pseudo : _no_value

name	LOC100040075 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040075
definition	number : 1 pseudo : _no_value

name	LOC665632 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271529 GeneID:665632
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 13 Proteins product : similar to laminin receptor pseudo : _no_value transcript_id : XR_031534.1

clone name	MSMg01-048J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296C07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-163L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163F19
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-028C15.b	B6Ng01-028C15.g
ACC	DH858714	DH858715
length	1,164	1,030
definition	DH858714\|Mus musculus domesticus DNA, BAC clone: B6Ng01-028C15, 5' end.	DH858715\|Mus musculus domesticus DNA, BAC clone: B6Ng01-028C15, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg ggattgcaggcttgtacaactactctggaaatccgtctggcggttcctca gaaaattggacatagtactaccggaggattcagcaatacctctcctgggc atatatccagaagatgccccaactggtaagaaggacacatgctccactat gttcatagcagccttatttataatagccagaagctggaaagaacccagat gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc taggatacccaagatataagatacaatttcctaaacacatgaaactcaag aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa caaaacacccttggaaggagttacagagacaaagtttggagctgagatga aaggatggaccatgtagagactgccttatccagggatccaccccataatc agcatccaaacgctgacaccattgcatacactagcagattttatcgaaag gacccagatgtagctgtctcttgtgagactatgccgggcctagcaaacac agaagtggatgctcacagtcagctaatggatgggatacagggctcccaat ggaggggctagagaaagtatccaggagctaaagggatctgcatcctatag tggatcacattatgaactaaccagtactctggagcctctgactctagctg ctatgtatcaaaagatgtctaatcgcctcctgaaaagaagccatggacaa caaactttaatgctcagtacgggagtccggggcaaaaggggagggctggg aaggggagatgggg	gaattctgtttaatcctgtattacatttttaattgaaatatttgcatttt gatagattatttcttatttatttattttgatattagcactctattaaatg tgaaattgataaaaatatattcacattctgttagctgctactttttccaa aatatggtatgaaaactatgccttacagaatgattttagtttatgaggtc ccaattattaattgtggaaattattgcctgcactaatgaacttttcttgt gacaattgagttcaaggctattttcccactttgtttttctatcaagtgca atgtatccagcttaacattgaggtatttgacatttgtagttgagattgtg tagggtgataattacaggtctgtgtccatttcttctatgtgcaaccatca atttgaccagcaccatttgttgaagatactatcttttttttcctgtgtgt atttctgacttctttataaaataaatcagctgtctataggtatatggata tatatctgcatcttcagtttgattatattgatcagcatatatgtttttac tccaatacccactaaaagttttatatatatatatcaagatagttcaattt tctcatacatgtaatgaatatgaatatcaattcaatcaacagttacatat attctataagcaattgcacttactgaatttattaataactaataatttgt acaatatataatttataatttagtgaatttaagatataattttcaagtgg cttttaatattttcacaatgtttacaaccattattacatgtacttctaga ttgtttttactaatcaccatatttcttcattccaatgatataggcattac tcttcatacatctctcaaacatgatcatttatcttctttaataactatga atttgaatataagatgtttataaatgtgaaatcttatcatgtttgtcgtt ttgtttaacctttttatcttagggcaatgattacaataagatataaattt ttagatataccccactttctttgtcactta
quality values	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chrX_43384296_43385266
seq2: B6Ng01-028C15.g_126_1095

seq1  TTCTTATTTATTTATTTTGATATTAGCACTCTATTAAATGTGAAATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTATTTATTTTGATATTAGCACTCTATTAAATGTGAAATTGAT  50

seq1  AAAAATATATTCACATTCTGTTAGCTGCTACTTTTTCCAAAATATGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATATTCACATTCTGTTAGCTGCTACTTTTTCCAAAATATGGTAT  100

seq1  GAAAACTATGCCTTACAGAATGATTTTAGTTTATGAGGTCCCAATTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTATGCCTTACAGAATGATTTTAGTTTATGAGGTCCCAATTATTA  150

seq1  ATTGTGGAAATTATTGCCTGCACTAATGAACTTTTCTTGTGACAATTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGAAATTATTGCCTGCACTAATGAACTTTTCTTGTGACAATTGAG  200

seq1  TTCAAGGCTATTTTCCCACTTTGTTTTTCTATCAAGTGCAATGTATCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCTATTTTCCCACTTTGTTTTTCTATCAAGTGCAATGTATCCAG  250

seq1  CTTAACATTGAGGTATTTGACATTTGTAGTTGAGATTGTGTAGGGTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATTGAGGTATTTGACATTTGTAGTTGAGATTGTGTAGGGTGATA  300

seq1  ATTACAGGTCTGTGTCCATTTCTTCTATGTGCAACCATCAATTTGACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGTCTGTGTCCATTTCTTCTATGTGCAACCATCAATTTGACCAG  350

seq1  CACCATTTGTTGAAGATACTATCTTTTTTTTCCTGTGTGTATTTCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTGTTGAAGATACTATCTTTTTTTTCCTGTGTGTATTTCTGACT  400

seq1  TCTTTATAAAATAAATCAGCTGTCTATAGGTATATGGATATATATCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAAATAAATCAGCTGTCTATAGGTATATGGATATATATCTGCA  450

seq1  TCTTCAGTTTGATTATATTGATCAGCATATATGTTTTTACTCCAATACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTTTGATTATATTGATCAGCATATATGTTTTTACTCCAATACCC  500

seq1  ACTAAAAGTTTTATATATATATATCAAGATAGTTCAATTTTCTCATACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGTTTTATATATATATATCAAGATAGTTCAATTTTCTCATACAT  550

seq1  GTAATGAATATGAATATCAATTCAATCAACAGTTACATATATTCTATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAATATGAATATCAATTCAATCAACAGTTACATATATTCTATAAG  600

seq1  CAATTGCACTTACTGAATTTATTAATAACTAATAATTTGTACAATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCACTTACTGAATTTATTAATAACTAATAATTTGTACAATATATA  650

seq1  ATTTATAATTTAGTGAATTTAAGATATAATTTTCAAGTGGCTTTTAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAATTTAGTGAATTTAAGATATAATTTTCAAGTGGCTTTTAATAT  700

seq1  TTTCACAATGTTTACAACCATTATTACATGTACTTCTAGATTGTTTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATGTTTACAACCATTATTACATGTACTTCTAGATTGTTTTTAC  750

seq1  TAATCACCATATTTCTTCATTCCAATGATATAGGCATTACTCTTCATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACCATATTTCTTCATTCCAATGATATAGGCATTACTCTTCATACA  800

seq1  TCTCTCAAACATGATCATTTATCTTCTTTAATAACTATGAATTTGAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAACATGATCATTTATCTTCTTTAATAACTATGAATTTGAATAT  850

seq1  AAGATGTTTAATAAATGTGAAATCTTATCATGTTTGTCGTTTTGCTTAAC  900
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  AAGATGTTT-ATAAATGTGAAATCTTATCATGTTTGTCGTTTTGTTTAAC  899

seq1  CATTTTATCTTAGGGCAATGATTACAATAGTATATAAATTTTTAGATATA  950
      | |||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CTTTTTATCTTAGGGCAATGATTACAATAAGATATAAATTTTTAGATATA  949

seq1  CCACAATTTCTTTGTCACTTA  971
      || || |||||||||||||||
seq2  CCCCACTTTCTTTGTCACTTA  970

BAC Information

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BAC

BAC End Information

Alignment Information