BAC Information

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BAC

Clone NameB6Ng01-029C06
ChromosomeX (Build37)
Map Location 39,998,671 - 40,102,013
singlet/doubletdoublet
Overlap geneOdz1
Upstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029C06.bB6Ng01-029C06.g
ACCDH859425DH859426
length1,1531,138
definitionDH859425|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C06, 5' end.DH859426|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,998,671 - 39,999,255)(40,100,851 - 40,102,013)
sequence
gaattcttttttatttagagtccattagtttgttgttatttattattatc
atttattattattattaacctaagatcattttcccatgccaagccaccaa
attatatttattcatcatttattcttaggcttttctggcctgtatcattt
tcttggacttttcttgtttttagatgactataacagttttaagagtactt
gtcagttgttatataggaatttttactggaattttttccaatattttcct
cagataggaattgtggtgtttctgtggaacggtgtcattttgaccaaatt
atatctagattgtaaacggtcagtaaaatttctccctgccaggcttggcc
tggagcttctgatggagccatttcccctttctataaaacacaaaatgaaa
taaaaccagaaactctcattctggagtgttcttcctggaagggagttaat
attcacagacagaacttaagggagccaggaattaattgcatcctacctcc
ttgtgagtagagcatcatataaattattatcatttttggatgagtggttt
atttttctcatttatttaagaaaagtatgagtaatttacatcagtatggg
ctccatagacttttattttatgcctgcagcgaacaaaaccagaggctatt
tggtgttgtgtaagttgtcacactaagaactctttctgttggattatatg
cctcttttccatgcctcaataaatgtttattatcatcactactggcacca
ccatcatcattatgttaagacttaatcacttctgtcacttcaagaatgtt
ctagattctttcctcctctgatactagaatcagtcatttctggagggcaa
tagctctgtttatttggaaatggtattaaaaagcaaaacttcattgctag
ttcttttttgtttgtttgtttatttgtttggttggttttttcgagacagg
atttctctctatatagccctggctgtcctggaactcactttgtagaccag
ctggcctgcacatcagaaatctgcctgcttctgacttccaaatgctggga
ctaaaggcgtgcgccacatgccgctcattgctagttctaagactgatttg
catgtaaccctctcctaaaaaactgggactgctccgacaaatccatatcc
atc
gaattctcagtttagttctataccccattttttgattggtttttatctga
tgtggggttagtgaagatatttttccccaatctgtaggttgccaattttt
attgtgatatatatacacacatatatatatattctatactgcaatcacat
aggtttaagcctcctgaacacaggtcaagatatcaagatagtaatcaaat
aatgacccttcagacagttaatggtgtcttgtctcttcccaggtccagag
atatgacctggataccattctttaaacactaattagagtctagaactttg
atgcttattttttctaccaactgcagattttgagggctgaatctagacat
aatattctctaaaccagctaacattaaattatctacctaaaaaatgtcct
agcaatgtcaagtacataatgcaatattagtgaaattgggagtgacttaa
atactttaaattgtctacttatagctaaattaatagcttcatatcagtat
gatttaactctattagaatgttagtatcaaatgactgcagagatgtaaaa
aatggttaaaaatctcttgatcatttaataaaacataatgtgaaacgttt
taggaaacacgaaaaatatatttatttcaagtgtaaaatcccagaatttg
gatgtctgaataaagcatgaggattacaaatttgggccaagcttgggtta
cataagaaaccatatatttatcttatgattatgctaatagacatgtaaca
tttaaaaaaattttaaatactaaattgtattttctcagagtaaagttata
aagtttaaaaactatacttaatgagttaaacatcaatagacggtacattc
aaatgccatacaaatgcatttaaatgtgtttttatcatgctaaggagttt
attaactctaggttccttttctttcttcatgcaaatttcatgttgagggg
aaaataagtgtagacgcatggtctgtacacaatagttacaacttgatgct
agtgcaccactggtgcagttctagagcttctcaattctgctagcatatgt
ctctcaagctctctctgattcattctcttaagtcagaaggctcttaacag
aatgctgatgagaagacgccacttatgagctctcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_39998671_39999255
seq2: B6Ng01-029C06.b_626_1196

seq1  AATTTACATCAGTATGGGCTCCATAGACTTTTATTTTATGCCTGCAGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATCAGTATGGGCTCCATAGACTTTTATTTTATGCCTGCAGCGA  50

seq1  ACAAAACCAGAGGCTATTTGGTGTTGTGTAAGTTGTCACACTAAGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAGAGGCTATTTGGTGTTGTGTAAGTTGTCACACTAAGAACTC  100

seq1  TTTCTGTTGGATTATATGCCTCTTTTCCATGCCTCAATAAATGTTTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGGATTATATGCCTCTTTTCCATGCCTCAATAAATGTTTATTA  150

seq1  TCATCACTACTGGCACCACCATCATCATTATGTTAAGACTTAATCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTACTGGCACCACCATCATCATTATGTTAAGACTTAATCACTTC  200

seq1  TGTCACTTCAAGAATGTTCTAGATTCTTTCCTCCTCTGATACTAGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTCAAGAATGTTCTAGATTCTTTCCTCCTCTGATACTAGAATCA  250

seq1  GTCATTTCTGGAGGGCAATAGCTCTGTTTATTTGGAAATGGTATTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTGGAGGGCAATAGCTCTGTTTATTTGGAAATGGTATTAAAAA  300

seq1  GCAAAACTTCATTGCTAGTTCTTTTTTGTTTGTTTGTTTATTTGTTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTTCATTGCTAGTTCTTTTTTGTTTGTTTGTTTATTTGTTTGGT  350

seq1  TGGTTTTTTTCGAGACAGGATTTCTCTCTATATAGCCCTGGCTGTCCTGG  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-TTTTTTCGAGACAGGATTTCTCTCTATATAGCCCTGGCTGTCCTGG  399

seq1  AACTCACTTTGTAGACCAGGCTGGCCTGCACATCAGAAATCTGCCTGCCT  450
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  AACTCACTTTGTAGACCA-GCTGGCCTGCACATCAGAAATCTGCCTGCTT  448

seq1  CTGACTCCCAAATGCTGGGACTAAAGGCGTGCGCCACCATGCCCGGCTTC  500
      |||||| ||||||||||||||||||||||||||||| ||||||  || ||
seq2  CTGACTTCCAAATGCTGGGACTAAAGGCGTGCGCCA-CATGCC--GC-TC  494

seq1  ATTGCTAGTTCTAAGCACTGATTTTGCATGTAACCCTCTTCCTAAAAATA  550
      ||||||||||||||| ||||| |||||||||||||||| ||||||||| |
seq2  ATTGCTAGTTCTAAG-ACTGA-TTTGCATGTAACCCTC-TCCTAAAAA-A  540

seq1  CTGTGAACTGCTTCCAGACAAATACCATATCCATC  585
      ||| | ||||||  | ||||||| |||||||||||
seq2  CTG-GGACTGCT--CCGACAAAT-CCATATCCATC  571

seq1: chrX_40100851_40102013
seq2: B6Ng01-029C06.g_66_1203 (reverse)

seq1  TGAAGAAGAGCTCATAGAGTTGTCGTGTCCTTCTCATCAGCATTCTTGTT  50
      ||||| |||||||||| || || |||   |||||||||||||||| ||||
seq2  TGAAG-AGAGCTCATA-AG-TGGCGT---CTTCTCATCAGCATTC-TGTT  43

seq1  AAGGGGCTTTCCTGACTTAAGAGAATGAAATCAGAGTAGAAGCTCTGAGA  100
      ||| | |||  |||||||||||||||| |||||||| || |||| |||||
seq2  AAGAGCCTT--CTGACTTAAGAGAATG-AATCAGAG-AG-AGCT-TGAGA  87

seq1  GACATAATGCTAGCAAGAATTGAAGAAGCTCTGAGAACTGCACCAGGTTG  150
      ||||| |||||||| ||||||| ||||||||| |||||||||||||  ||
seq2  GACAT-ATGCTAGC-AGAATTG-AGAAGCTCT-AGAACTGCACCAG--TG  131

seq1  GTGCACTTAGCATCAAGTTGTAACTATTGTGTAACAGACCATGCGTCTAC  200
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGCAC-TAGCATCAAGTTGTAACTATTGTGT-ACAGACCATGCGTCTAC  179

seq1  AACTTATTTTCCCCCTCAACATGAAATTTTGCATGAAGAAAGAAAAGGAA  250
       ||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  -ACTTATTTT-CCCCTCAACATGAAA-TTTGCATGAAGAAAGAAAAGGAA  226

seq1  CCTAGAGTTAATAAACTCCTTAGCATGATAAAAAACACATTTAAATGCAT  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTAGAGTTAATAAACTCCTTAGCATGAT-AAAAACACATTTAAATGCAT  275

seq1  TTGTATGGCATTTGAATGTACCGTCTATTGATGTTTAACTCATTAAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGCATTTGAATGTACCGTCTATTGATGTTTAACTCATTAAGTAT  325

seq1  AGTTTTTAAACTTTATAACTTTACTCTGAGAAAATACAATTTAGTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAAACTTTATAACTTTACTCTGAGAAAATACAATTTAGTATTTA  375

seq1  AAATTTTTTTAAATGTTACATGTCTATTAGCATAATCATAAGATAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTTAAATGTTACATGTCTATTAGCATAATCATAAGATAAATAT  425

seq1  ATGGTTTCTTATGTAACCCAAGCTTGGCCCAAATTTGTAATCCTCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTTATGTAACCCAAGCTTGGCCCAAATTTGTAATCCTCATGCT  475

seq1  TTATTCAGACATCCAAATTCTGGGATTTTACACTTGAAATAAATATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGACATCCAAATTCTGGGATTTTACACTTGAAATAAATATATTT  525

seq1  TTCGTGTTTCCTAAAACGTTTCACATTATGTTTTATTAAATGATCAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGTTTCCTAAAACGTTTCACATTATGTTTTATTAAATGATCAAGAG  575

seq1  ATTTTTAACCATTTTTTACATCTCTGCAGTCATTTGATACTAACATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAACCATTTTTTACATCTCTGCAGTCATTTGATACTAACATTCTA  625

seq1  ATAGAGTTAAATCATACTGATATGAAGCTATTAATTTAGCTATAAGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTAAATCATACTGATATGAAGCTATTAATTTAGCTATAAGTAGA  675

seq1  CAATTTAAAGTATTTAAGTCACTCCCAATTTCACTAATATTGCATTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAGTATTTAAGTCACTCCCAATTTCACTAATATTGCATTATGT  725

seq1  ACTTGACATTGCTAGGACATTTTTTAGGTAGATAATTTAATGTTAGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACATTGCTAGGACATTTTTTAGGTAGATAATTTAATGTTAGCTGG  775

seq1  TTTAGAGAATATTATGTCTAGATTCAGCCCTCAAAATCTGCAGTTGGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAATATTATGTCTAGATTCAGCCCTCAAAATCTGCAGTTGGTAG  825

seq1  AAAAAATAAGCATCAAAGTTCTAGACTCTAATTAGTGTTTAAAGAATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAGCATCAAAGTTCTAGACTCTAATTAGTGTTTAAAGAATGGT  875

seq1  ATCCAGGTCATATCTCTGGACCTGGGAAGAGACAAGACACCATTAACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGTCATATCTCTGGACCTGGGAAGAGACAAGACACCATTAACTGT  925

seq1  CTGAAGGGTCATTATTTGATTACTATCTTGATATCTTGACCTGTGTTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGTCATTATTTGATTACTATCTTGATATCTTGACCTGTGTTCAG  975

seq1  GAGGCTTAAACCTATGTGATTGCAGTATAGAATATATATATATGTGTGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTAAACCTATGTGATTGCAGTATAGAATATATATATATGTGTGTA  1025

seq1  TATATATCACAATAAAAATTGGCAACCTACAGATTGGGGAAAAATATCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCACAATAAAAATTGGCAACCTACAGATTGGGGAAAAATATCTT  1075

seq1  CACTAACCCCACATCAGATAAAAACCAATCAAAAAATGGGGTATAGAACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACCCCACATCAGATAAAAACCAATCAAAAAATGGGGTATAGAACT  1125

seq1  AAACTGAGAATTC  1163
      |||||||||||||
seq2  AAACTGAGAATTC  1138