BAC Information

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BAC

Clone NameB6Ng01-029F08
ChromosomeX (Build37)
Map Location 38,272,391 - 38,412,244
singlet/doubletdoublet
Overlap genenone
Upstream geneEG636756, EG636766, EG245391, LOC100039769
Downstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029F08.bB6Ng01-029F08.g
ACCDH859560DH859561
length1,2381,152
definitionDH859560|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F08, 5' end.DH859561|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,410,942 - 38,412,244)(38,272,391 - 38,273,436)
sequence
gaattcacaggatagaaagagctgagataaaatgtaaaatcatagaaaaa
tatatttgatgaaaatatttcagaaaatttgcaaatcttgggaaagaaat
gtacatgtaattatagaaacccaaataaacatgtgaagagaagaatttct
ttctatattatattatagtaaatatccccagaccaaagaaacagtataaa
agagtgtaaggtaatacaccaactcacttatataataaaattaatcataa
taaagccagacctctgctctgaaagcccaagatacaagagagcattgagt
gatgtatttcaaaccatacaatttattaaccaccaaccaaggctgctgaa
cccagaaaacttatctattaaaattggcagaagcagggaggtgggctaga
gaggtggctcagtaataagcacttcttgctactttttcaatgaaataaag
ttcactttccagaattcatgtgctcacaactgcctctaactccagatcca
gtgagccaactttctcttcttctacctatgggtatccatatatacatgcc
acagattcacacacactcaccaatacaatttgacagtaaaataaaacata
taacacaaactcaaactaaagcaatttaaggtaacgctacaaaaattact
ttaggaaatatttacacaacaggaagaggcagaggaggaagaggaagaag
actaagaagaagaggaggaagaaggttgtagtcatgatagcatagtaaag
acatatttttagtggaatagattagaaaaggagaaataggaggttgaaat
aggtaaagcagcatatactaactggggaaaacgaaagtcatagggagaaa
gaaaggaagcaagtgatattctacccataactggagaaaacaaccttgaa
gttcaagtggaagcatatacatttagaaagccagagaatcctggtcagaa
gagcagagtatcacagtaaccttttcaaatatactacagagccatagcac
aaaccaaatggtactgaccgatattcaaatgagcagcatcataatgattt
atgaggcacaaagctaccagttttgatgcgggtggttgaacattcagtta
gaaaaagtgtcatatgggatgatggaaatggttggaatatagatataatg
agcctcatctacagcatctggctgattaattcttagactgaacttgatcg
gaaacttgtagggcgagtactcttcgagagactctgat
gaattctcaaatgtagaataaaaatagctaagagctatctcaaaaatgtt
cagtttctttattaaggaaatgtagatgaaagcaactttgatatttcatt
tcactggtatgagaatgactaagatcaccaaaacaactaacaacaaattc
tcgtaaagttgtgaagaagatgggaccctgtttgtagggtttcagcttga
tagagtcagtttgaaaataagtatacagaattcatcaaaaactagaaata
agtctacaatattaactagttatactgctcttggcatattccaaaaggac
tcaacaacctacttcatagatacttgcttaaccaggttcattgccatctt
gttggcaatatatgtgaaatttaaacaaaataaatatccttcaaattatg
aatagatagtaaaaattcagtgcatgtacacaacaagatactattcacct
gcaaaggaaaatggaatcatgaaatttacaagtagacatagacacagaaa
aacaaatgcatattctctttctctctctcatttatggttcctagctccaa
atcattagatgtaaatataaaatctggagtaacctcagaaaccaggaaat
taaaagggaccatgacagggaactagacagggggacatcaattacaataa
gaaagaggaagtggaaatatttggtgtctaattgaggaaggggttgggaa
tcatcacagaaagaaatggaagaatgacaaaaaatgcaaagaatgcttga
taaagcttaaaggaataatattgttttgtatttaactaaaatgatatgta
gttcataatagtgtatgtatgaaatttatatgtattatgaagaatgctct
ctacaaaagccatataattttctaaaaacaacaacaacaacaacaacaca
aaaaacattgtaccatatctaaaactttatttgccacaagaattttctat
agttgcactgcagctcactagaaatgcaggaaaatatatacttatctatc
catgactgtaccaaagcaaggtctactcataaaaaaatgtcagatgacaa
tcaggtattttttttggaggtcagtaccatttaaatgcctcagtcttatt
aaattatagatgtcaggctgacaatggagagccttaaagcctcaaaagaa
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38410942_38412244
seq2: B6Ng01-029F08.b_43_1280 (reverse)

seq1  ATCAGAGTCTTTCTAGAAGAGTTACTTG-CCTACATATGTTTTCTCCTAG  49
      |||||||||  ||| |||||| |||| | |||||  | |||| |     |
seq2  ATCAGAGTC--TCTCGAAGAG-TACTCGCCCTAC--AAGTTTCC-----G  40

seq1  AATTACAATGTTTCAAGTCTTAAGGAATTTAATCTATGCATGATGGATTG  99
      |    ||| |||   |||| ||||  | ||||||   ||  ||     ||
seq2  A---TCAA-GTT--CAGTC-TAAG--AATTAATC--AGCCAGA-----TG  74

seq1  ATAAAGTATGAGATCTAATTATATTATTCTATATATTCATACTCATTTTC  149
       |  || |||||  || ||||||      | |||||||  || |||||  
seq2  CTGTAG-ATGAG-GCTCATTATA------TCTATATTCCAAC-CATTT--  113

seq1  CTATCATCCCATATTGAACACTTTTTTTTTTCTAAACTGAATGTTTCACA  199
      | ||||||||||||   ||||||||| |      ||||||||| ||||  
seq2  CCATCATCCCATAT--GACACTTTTTCT------AACTGAATG-TTCAAC  154

seq1  CACCCGCATCAAAAAACTGGTAGCTTTTTGTGGCTTCATAGATTCATTTA  249
      ||||||||||  ||||||||||||||| |   || ||||| | |||||  
seq2  CACCCGCATC--AAAACTGGTAGCTTTGT---GCCTCATA-AATCATT--  196

seq1  TTGATGCTGCTCATTTTGAATTATCGTGTCAGTACCATTTTGGTTTTGTT  299
       |||||||||||| |||||| ||||| |||||||||| ||||||||   |
seq2  ATGATGCTGCTCA-TTTGAA-TATCG-GTCAGTACCA-TTTGGTTT--GT  240

seq1  GCTATGGCTCTGTAGTATATTTTGAAAAAGGTTACTGTGATACCTCTGCT  349
      ||||||||||||||||||||||   ||||||||||||||||| |||||||
seq2  GCTATGGCTCTGTAGTATATTT--GAAAAGGTTACTGTGATA-CTCTGCT  287

seq1  CTTCTGACCAGGATTCTCTGGCTTTTCTAAATGTATTATGCTTCCACTTG  399
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  CTTCTGACCAGGATTCTCTGGC-TTTCTAAATGTA-TATGCTTCCACTTG  335

seq1  AACTTCAAGGTTGTTTTTCTCCAGTTATGGGTAGAATATCACTTGCTTCC  449
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAGGTTG-TTTTCTCCAGTTATGGGTAGAATATCACTTGCTTCC  384

seq1  TTTCTTTCTCCCTATGACTTTCGTTTTCCCCAGTTAGTATATGCTGCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTCCCTATGACTTTCGTTTTCCCCAGTTAGTATATGCTGCTTT  434

seq1  ACCTATTTCAACCTCCTATTTCTCCTTTTCTAATCTATTCCACTAAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTCAACCTCCTATTTCTCCTTTTCTAATCTATTCCACTAAAAAT  484

seq1  ATGTCTTTACTATGCTATCATGACTACAACCTTCTTCCTCCTCTTCTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTACTATGCTATCATGACTACAACCTTCTTCCTCCTCTTCTTCT  534

seq1  TAGTCTTCTTCCTCTTCCTCCTCTGCCTCTTCCTGTTGTGTAAATATTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCTTCCTCTTCCTCCTCTGCCTCTTCCTGTTGTGTAAATATTTC  584

seq1  CTAAAGTAATTTTTGTAGCGTTACCTTAAATTGCTTTAGTTTGAGTTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTAATTTTTGTAGCGTTACCTTAAATTGCTTTAGTTTGAGTTTGT  634

seq1  GTTATATGTTTTATTTTACTGTCAAATTGTATTGGTGAGTGTGTGTGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGTTTTATTTTACTGTCAAATTGTATTGGTGAGTGTGTGTGAAT  684

seq1  CTGTGGCATGTATATATGGATACCCATAGGTAGAAGAAGAGAAAGTTGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCATGTATATATGGATACCCATAGGTAGAAGAAGAGAAAGTTGGC  734

seq1  TCACTGGATCTGGAGTTAGAGGCAGTTGTGAGCACATGAATTCTGGAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGATCTGGAGTTAGAGGCAGTTGTGAGCACATGAATTCTGGAAAG  784

seq1  TGAACTTTATTTCATTGAAAAAGTAGCAAGAAGTGCTTATTACTGAGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTATTTCATTGAAAAAGTAGCAAGAAGTGCTTATTACTGAGCCA  834

seq1  CCTCTCTAGCCCACCTCCCTGCTTCTGCCAATTTTAATAGATAAGTTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAGCCCACCTCCCTGCTTCTGCCAATTTTAATAGATAAGTTTTC  884

seq1  TGGGTTCAGCAGCCTTGGTTGGTGGTTAATAAATTGTATGGTTTGAAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAGCAGCCTTGGTTGGTGGTTAATAAATTGTATGGTTTGAAATA  934

seq1  CATCACTCAATGCTCTCTTGTATCTTGGGCTTTCAGAGCAGAGGTCTGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTCAATGCTCTCTTGTATCTTGGGCTTTCAGAGCAGAGGTCTGGC  984

seq1  TTTATTATGATTAATTTTATTATATAAGTGAGTTGGTGTATTACCTTACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATGATTAATTTTATTATATAAGTGAGTTGGTGTATTACCTTACA  1034

seq1  CTCTTTTATACTGTTTCTTTGGTCTGGGGATATTTACTATAATATAATAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTATACTGTTTCTTTGGTCTGGGGATATTTACTATAATATAATAT  1084

seq1  AGAAAGAAATTCTTCTCTTCACATGTTTATTTGGGTTTCTATAATTACAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAATTCTTCTCTTCACATGTTTATTTGGGTTTCTATAATTACAT  1134

seq1  GTACATTTCTTTCCCAAGATTTGCAAATTTTCTGAAATATTTTCATCAAA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTCTTTCCCAAGATTTGCAAATTTTCTGAAATATTTTCATCAAA  1184

seq1  TATATTTTTCTATGATTTTACATTTTATCTCAGCTCTTTCTATCCTGTGA  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTCTATGATTTTACATTTTATCTCAGCTCTTTCTATCCTGTGA  1234

seq1  ATTC  1303
      ||||
seq2  ATTC  1238

seq1: chrX_38272391_38273436
seq2: B6Ng01-029F08.g_190_1218

seq1  ATCACCAAAACAACTAACAACAAATTCTCGTAAAGTTGTGAAGAAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAAACAACTAACAACAAATTCTCGTAAAGTTGTGAAGAAGATGG  50

seq1  GACCCTGTTTGTAGGGTTTCAGCTTGATAGAGTCAGTTTGAAAATAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTTTGTAGGGTTTCAGCTTGATAGAGTCAGTTTGAAAATAAGTA  100

seq1  TACAGAATTCATCAAAAACTAGAAATAAGTCTACAATATTAACTAGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATTCATCAAAAACTAGAAATAAGTCTACAATATTAACTAGTTAT  150

seq1  ACTGCTCTTGGCATATTCCAAAAGGACTCAACAACCTACTTCATAGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTGGCATATTCCAAAAGGACTCAACAACCTACTTCATAGATAC  200

seq1  TTGCTTAACCAGGTTCATTGCCATCTTGTTGGCAATATATGTGAAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAACCAGGTTCATTGCCATCTTGTTGGCAATATATGTGAAATTTA  250

seq1  AACAAAATAAATATCCTTCAAATTATGAATAGATAGTAAAAATTCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATAAATATCCTTCAAATTATGAATAGATAGTAAAAATTCAGTGC  300

seq1  ATGTACACAACAAGATACTATTCACCTGCAAAGGAAAATGGAATCATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACAACAAGATACTATTCACCTGCAAAGGAAAATGGAATCATGAA  350

seq1  ATTTACAAGTAGACATAGACACAGAAAAACAAATGCATATTCTCTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAGTAGACATAGACACAGAAAAACAAATGCATATTCTCTTTCTC  400

seq1  TCTCTCATTTATGGTTCCTAGCTCCAAATCATTAGATGTAAATATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTTATGGTTCCTAGCTCCAAATCATTAGATGTAAATATAAAAT  450

seq1  CTGGAGTAACCTCAGAAACCAGGAAATTAAAAGGGACCATGACAGGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTAACCTCAGAAACCAGGAAATTAAAAGGGACCATGACAGGGAAC  500

seq1  TAGACAGGGGGACATCAATTACAATAAGAAAGAGGAAGTGGAAATATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGGGGGACATCAATTACAATAAGAAAGAGGAAGTGGAAATATTTG  550

seq1  GTGTCTAATTGAGGAAGGGGTTGGGAATCATCACAGAAAGAAATGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAATTGAGGAAGGGGTTGGGAATCATCACAGAAAGAAATGGAAGA  600

seq1  ATGACAAAAAATGCAAAGAATGCTTGATAAAGCTTAAAGGAATAATATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAAATGCAAAGAATGCTTGATAAAGCTTAAAGGAATAATATTG  650

seq1  TTTTGTATTTAACTAAAATGATATGTAGTTCATAATAGTGTATGTATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTTAACTAAAATGATATGTAGTTCATAATAGTGTATGTATGAA  700

seq1  ATTTATATGTATTATGAAGAATGCTCTCTACAAAAGCCATATAA-TTTCT  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTTATATGTATTATGAAGAATGCTCTCTACAAAAGCCATATAATTTTCT  750

seq1  AAAAACAACAACAACAACAACAACAACAAAAAACATTGTACCATATCTAA  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAACAACAACAACAACAACAAC-ACAAAAAACATTGTACCATATCTAA  799

seq1  AACTTTATTTGCCACAAGAATTTTCTAATAGTTGCACTGCAGCTCAACTA  849
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  AACTTTATTTGCCACAAGAATTTTCT-ATAGTTGCACTGCAGCTC-ACTA  847

seq1  GAAAATGCA-GAAAATATATACTTATCTATCCATGACTGTACCAAAAGCA  898
      | ||||||| ||||||||||||||||||||||||||||||||| ||||| 
seq2  G-AAATGCAGGAAAATATATACTTATCTATCCATGACTGTACC-AAAGC-  894

seq1  AAGTTCTACTCAATAAAAAAAAATGTCAGATGACAAAATCAGGTATATAT  948
      ||| |||||||   | ||||||||||||||||||  |||||||||| | |
seq2  AAGGTCTACTC---ATAAAAAAATGTCAGATGAC--AATCAGGTATTTTT  939

seq1  TTTGAAGGTCCAAGTACACAATTAAAATGCTCAGTTCCTATTAAAAATTT  998
      |||| |||||  ||||| || |||||   ||||| || |||||||   ||
seq2  TTTGGAGGTC--AGTAC-CATTTAAATGCCTCAG-TCTTATTAAA---TT  982

seq1  ATAGATGTCA-GCTGAGCAATAGGAGA-CCCTAAAGCCTCAAAAAGAACC  1046
      |||||||||| ||||| |||| ||||| || ||||||||| |||||||||
seq2  ATAGATGTCAGGCTGA-CAAT-GGAGAGCCTTAAAGCCTC-AAAAGAACC  1029