BAC Information

Click to search

BAC

Clone NameB6Ng01-030B08
ChromosomeX (Build37)9 (Build37)
Map Location 159,631,588 - 159,631,63935,026,887 - 35,027,353
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030B08.bB6Ng01-030B08.g
ACCDH860092DH860093
length148828
definitionDH860092|Mus musculus domesticus DNA, BAC clone: B6Ng01-030B08, 5' end.DH860093|Mus musculus domesticus DNA, BAC clone: B6Ng01-030B08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(159,631,588 - 159,631,639)(35,026,887 - 35,027,353)
sequence
gaattctacgttctgatccaaaagcagcaagaagagacagtgagccacta
ggcctgggttgagcttctcaaatctcaaagtccaacccccccccccccat
tgacacatttcctccaaggctatacctactccaacaaggccacactcc
gaattcatgaggttgacacacttgagtgtgtatatagtgtcctggggtcc
ttggaaaccactggagagatggctcagtggcacagagtagttgctgcaga
ggaccagagcttagttctcggcacccacatgaggcagttcacatctgcct
gaaactgcccaggggatccagtgccctcttccaggttctccagacatttg
tacacacgtggcatgtactcacacagatataaacacaaattatcattttt
taaaaatggaagggccaggcccggcagtggtggtgcacacctttaatccc
agcactcgggaggcagaggcaggcagatttctgagtttgaggccagcctg
gtctacaaagtgagttccaggacagccagagttatacagagaaaccttgt
ctcaaaaaaacaaaaaaataaacaaacaaacaaaaagcctggaagggcct
gctgtgctggtacacacctttaatcccagcactcgggaggcagaggcagg
cagatttctgagtttgaggtcaacctggtctacaaagtgagttccaggac
agccatggctatacagagaaaccctgtctcaaaaaacaaaaaacaaacaa
acaaacaaaaacccaaaaacaaaaaaaaaagaaagtgggtagggagctgg
agagattagaggttcagagcacttgcagaggacccaggttcagttcccag
caccctcatggtggcaccacttgttaacttcagttccaagggattccaca
tcaccttcagacttctggggggcaccgggcatatacatacatgcagacaa
aacacacatactcataaaatgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159631588_159631639
seq2: B6Ng01-030B08.b_140_187 (reverse)

seq1  GGAGTTGTGGCCTTGTTGGAGTAGATGTGGCTTTCTTGGAGGAACTGTGT  50
      |||| ||||||||||||||||||| | | ||   |||||||||| |||||
seq2  GGAG-TGTGGCCTTGTTGGAGTAGGTATAGC---CTTGGAGGAAATGTGT  46

seq1  CA  52
      ||
seq2  CA  48

seq1: chr9_35026887_35027353
seq2: B6Ng01-030B08.g_315_659

seq1  TTTAAAAAACAATCAGGCCAGGCGTGGTGGCGCACACCTTTAATCCCAGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCTCAACAAACTCAAAAAACGTCCAGAATTCTCAACAAACCTGCTTTA  100
                                                    ||||
seq2  ----------------------------------------------TTTA  4

seq1  GCCTCCAAAATGCTGGGATTACAGGGGATGAGCCACCACAGTGATAACGA  150
            |||||    |||    ||||    || | |  ||||| |     
seq2  ------AAAAT----GGA----AGGG--CCAGGCCCGGCAGTGGT-----  33

seq1  CGGCGCACGCCTTTAATCCCGGCACTCGGGAGGCAGAGGCAGGCAGATAT  200
       || |||| ||||||||||| ||||||||||||||||||||||||||| |
seq2  -GGTGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTT  82

seq1  CTGAGTTCGAGGCCAGCCTGGTCTATAAAGTGAGCTCCAGGACAGCCAGG  250
      ||||||| ||||||||||||||||| |||||||| |||||||||||||| 
seq2  CTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGA  132

seq1  G--CTACAGAGAAACCCTGTCTTGAAAAACAAAACCAACAAACAAACAAA  298
      |   |||||||||||| |||||  |||||  |||  || |||||||||||
seq2  GTTATACAGAGAAACCTTGTCTCAAAAAAACAAAAAAATAAACAAACAAA  182

seq1  AAAAAATCTTATTCCAGCCGGGCGTGGTGGCGCACACCTTTAATCCCAGC  348
       ||||| | |      ||| |  ||| |||  ||||||||||||||||||
seq2  CAAAAAGCCTGGAAGGGCCTGCTGTGCTGGTACACACCTTTAATCCCAGC  232

seq1  ACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTC  398
      |||||||||||||||||||||||||||||||||| |||| || |||||||
seq2  ACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGTCAACCTGGTC  282

seq1  TACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTCG  448
      ||||||||||||||||||||||||| ||||| |||||||||||||||   
seq2  TACAAAGTGAGTTCCAGGACAGCCATGGCTATACAGAGAAACCCTGT---  329

seq1  AAAGCCAAAAAAAAAAAAA  467
           ||||||| ||||||
seq2  ---CTCAAAAAACAAAAAA  345